Array 1 334464-333834 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_POXW01000001.1 Neisseria cinerea strain C2013024221 C2013024221_S39_ctg_602, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    334463	    36	 100.0	    30	....................................	GTACCCGTTATATAGGAGTAACTCATGGAC	
    334397	    36	 100.0	    30	....................................	TTTCTTTGATTTCCAAGCCCATTCTATTCA	
    334331	    36	 100.0	    30	....................................	GTTGAAATTTGACCATCATAGAATTCTTTA	
    334265	    36	 100.0	    30	....................................	ACGTGTTTATCTCTGCGATTGAGTGGATGA	
    334199	    36	 100.0	    30	....................................	CATCGAAGCGTAGGAAATTGTATCAGCTTT	
    334133	    36	 100.0	    30	....................................	ATCTGCTTCACTACTTTGCCTGTTGTTACA	
    334067	    36	 100.0	    30	....................................	GCCCCAAGTTCTCGTAATGGGCGGAAAACC	
    334001	    36	 100.0	    30	....................................	TCCGAAAACTGATTTAAACCTTTTGAATTG	
    333935	    36	 100.0	    30	....................................	ATTGTTTTAAAAGTTGCCGCAAATGCGAAC	
    333869	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        10	    36	 100.0	    30	GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	                              	       

# Left flank :   AACGGCGCAGCGATTGCAAACGCAGGGAAGAACGCGACATGGCAGGACTGTCCGAACGCATGGTGGCAGAGTTAGACAAGCACGGGGCCGCCGTATTTTTCCGAGAATATCCGAATGCCAACCACGGCAATGTCCCGTTCCACTCGCTGACCGACTGCGTGGAATATTTGAGGAAGGCTTGGCAGAGGTAGGGAATCAGGGGTGGGCATAAAAGGCTTATCGCAAGGTTGGAAGCCAAGAAGACCAAAAAAGCCGTTATCGCCGCATTGATGCGTAGGCTTGCCGGTACATATCACATAGACAAGAAAATCGAAGATGACGGCTCATCGCGTTATAAACCAGCGTAAATCCCGATAAGAAAAAAGGCATTTCTTTTGAAACGCCCGCCTTGCTGTGTGTAAAATCCTTTCAATTTTAAGGATTATGTTATCGATCAAAGGAGTATCTTTTCCATTTCGCAGTGCTATAATCGCCGGTATTTGCACCGTAGGCATAAGCTG
# Right flank :  ACCTCAATGGGAAATCCTTATTATGTAAGGGTTTCCCGTTTTATTTGTTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGCCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCGGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGACTCACTCATATTGGTATTCTTTCAATGGTAAGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGAAGAAACCATTTTGTCGATGGCGGCCAAGGTG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.90,-0.40] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,4.5   Confidence: HIGH] 

# Array family : NA
//