Array 1 54190-53567 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFOX01000002.1 Clostridium botulinum strain Hall 80 20497_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 54189 29 96.6 38 ...............A............. TTGGGTAGTCTGTACCTTCTAGTAAATTCGTTGTCCCG 54122 29 100.0 37 ............................. TCTAATATTAAAACTTTTCCAAAGCCATCTTTGCTTG 54056 29 100.0 38 ............................. GGAAATAAGTCATTCATATTTGATGCCAATATTGTTCG 53989 29 100.0 38 ............................. TCATCTATATAATAATTATTTCCAATTTCTTTTAATAG 53922 29 96.6 37 ...............G............. AAACAACTACTAGAGTTATTAATATACTTACATAATA 53856 29 93.1 37 ........C......A............. ATGTTATAATAAACAATTTTTGTTTCATCAAAATTGG 53790 29 93.1 37 .....T.........A............. TAGAAATTACAAGAATAACAATTAGATAGTATAGGAA 53724 29 96.6 37 ...............G............. ATCCATAATTCAATATATTTCTTTACCCATTTACGTG 53658 29 89.7 31 .......A......GA............. TATAGAACCTTCTCTTTTGTCTAAATCATTG 53598 29 82.8 0 .......A......GG...A........A | G,TA [53569,53572] ========== ====== ====== ====== ============================= ====================================== ================== 10 29 94.9 37 TTGAACATTAACATATGATGTATTTAAAT # Left flank : ATAAAAAATATTCTTGGAAATTTAGATGAAAATATAAAAGAACTCTTTATAAATAATCCATGTATACAAGTCAATAATGAAAGAATTGGAATAGAAGAGATGAAAGAAAAAAATATACCCATAGAATTATTAAAATCATCTGAAAAGGAAATTGACACTACACTTGATGCAGACGCTAATAACAAGTAGTATCTATAAAGGGGGTGAAAATGATATGGTATTACTGAAAATAGAAATTTATATAACTAGATTGCTAGTATATATCTATAAAAATTTAACCTTTTTACCTCTCTTTATAAGAAATAAATTATTAAGATATATTTCAATAAAAACATTTGATATAACTGAAGCAATGCATAAAAGAAATTTGTTATAGATTTTTAAGGTACTTCTATTATGGGAGTACCTTTTATTTTTTTTGCTTACTTTAATTTTAAAACCTTGTAAAATCAATACTTCTATGTTATCCTTAAAAATAAGGAATGGCTATTTTACTATGG # Right flank : TAATAATTGTAGCCTATGTTATAGTTATTATTTTTTATTCCTTAAAGGAATTTTTTAACATTTGTAGAATATTAAATATAATGCTTCCCAATGGGGTAATTATAGACCTCCGTATTTAAAAAAGAACTCCAATAATAAAATGGAGTTCTTTTTGTATGGAACTTTATATATTGGTGTTATGTTTTGGTAGTACCACTTTTGTATTATTTCATTGAAAAATGGTGTAAAATGTATGAATACTTGGGAAAAATTATAAAGGGAAAATTGTATAAATGTAGAAATTATATAATAAGAATCTGTTAATTTAAAATGATTTAACAGATAAAATAATATAAAGGGGGATGACTAAATGAAAAAAATTGTAATTGGTCTTTTAACAGCATTGATACTTGGGGTAAATGTATCTAGTGCTTATGCAGCAGAAAGTTGCCCAAGATGTGGTGCTACGGTTGGGCGAGGAGAAAATCATAAATGTTGCGATTATTTAGGTCATGATTTTA # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACATTAACATATGATGTATTTAAAT # Alternate repeat : TTGAACATTAACATAGGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 49599-50022 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFOX01000013.1 Clostridium botulinum strain Hall 80 20497_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 49599 30 100.0 34 .............................. TTTTTAACATAGTTACATATTTACGCTTTTTAAA 49663 30 100.0 36 .............................. AATTTTAATTGGCTATCAAATACTTTTTTAGAACTC 49729 30 100.0 36 .............................. GGCATCATTAAATTATAATATTTAATAAATTCTTCT 49795 30 100.0 36 .............................. ACGTTATTTTTACCTTCATAAGCTTTTAATAATTTT 49861 30 100.0 36 .............................. TTTGTAAACCCTTCTTCCTCTGTTGTTATTATTAAA 49927 30 100.0 36 .............................. CTATTTCTAGCCATTCTCTCTATATCAAATGTATCT 49993 30 96.7 0 ......T....................... | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 99.5 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AAATATGTTCTTGGTTAAACCGTAAAGATGAACTTGTAGCAGCAGTAGCTATAGGATATGTAAATCAACCCCCTTATCCACGTCCACGTAAACCGTGGAGAGAAGTTACAGAATGGATGAGTTAATACATTTAACATCAAACAATAAAAACGGAGAATTATTTTAAATACCGTATTATTTATAATTGAGTTCCATAGTGTTTTTACACCGCAATACAATTATATTGCAAAGTTAGATGTATTTAAGTAGTAAATATAAATCTGAGATTTAGTGTGAGGTGCTTACTCATTTGAGGAAGCGAGAAGGCGTTCTACTAACTGAATTTTTCCAGCCAAAATAAATTTTAAAACCTATTTTGAGCGTTGACACATAAGGCTTATGGTAGATTTTTATTTTATATTTGTAAAAAAGCAAAACTACTTGGAAAACTTTCTTTGAAATCTTGTAAAATCAATGGTTATATGCTATTCTTAAAAATCAGGAATGGCTATTTTACTATG # Right flank : TATTATATCTCCTCTTGTAGCGGGAGTTCCTATACCTGTTGAACATTTAAGTTCCTTTTAGGTGCAATTCTTTTTGGGTTATTGACTTGTTAGTCTAAAGCTACACCATAAGAAAGTTCATTAAACACATGTGGAAGAACAAGTAATAGATACAGCACTTGCTATTGATATGGTGAATTGTATTACAAATAACGAAGGTTTTATCTAAAACTGTTCATATGGCTGGATTTAAGAAATATAATAGTGTTCTAAGTTGTATCATAACCTAAGTAAATTATAAGAATATATGGTTATATTTATTTTAAGACTATTGTATTAATATGATTCATCCAGATTTAATTGTGAGAAATTTCATTATAAACTTAATAGGGAAGTCTTAGATTTTTTATTGCATGAGATTATACGTAAAATATTAATTTTCACTATAACTTAACAAATGATTGATACAATTTTAAAAAAATCAGGACTTACAATGATAAAGTAGGTCCTGATTTTTATTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 57238-57789 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFOX01000013.1 Clostridium botulinum strain Hall 80 20497_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 57238 30 100.0 36 .............................. AAAAAAAAGTAAAAAAAATGAAGAGGAAGAGTATTT 57304 30 100.0 35 .............................. AAAATTAAGTAGTAGGATGGAAAGATTCCTAGGAG 57369 30 100.0 35 .............................. GGCAAAACATTTAATGCTTGGGCATAAAATTCTTT 57434 30 100.0 36 .............................. AATTTCACATGAGCTATTAAAGGTTGATAATAAGCT 57500 30 96.7 35 .................G............ ATCTCAGAAGGTGTAAAATTATTACTTTCTGATAA 57565 30 96.7 35 .................G............ CTTTTCCCGGAAAGAAAAATCCAAGACATAGAATT 57630 30 86.7 34 ........TC......AG............ CCGAGTACTGGAACTTTATCTTCTAATTTAATAT 57694 30 90.0 36 ........T.......AG............ CAAACAATAATTCCATCAATTACATTATTATTTTTT 57760 30 86.7 0 ................AG..........GC | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 95.2 35 GTTGAACAATAACATAGAATGTATTTAAAT # Left flank : TCAGCAAGAAAACAGATGAAGGATTTGTTTTAAATACAAATGGAGAAGAATCAATTATTAATGCTGATAGTGCTGTTGTAGCTATTGGATATTTATCTGAAAAAGACTTATATAGTGAAGTTAGATTTGATATTCCAAATGCAAGACTAATTGGAGATGCTAATAAAGTTCAAAACATTATGTATGCTATTTGGAGTGCATATGAAGTAGCTAAAAATATTTAAATAAACTTTTGCAAAAAACTAGAATGGGTTTATATCCATATCTAGTTTTTTGTTTTTTACTTAAATTCTATAAGTATATGAGTGTTTGTCAGGCTATATTTTCCCAAACGAATTCAAATTTAAAGCTTATTCTAAGCATTGATATATAAGGATTAGAATAGGTTTTTATTATGAATTTTTAAAAAAGTAAAATCACTTGGAAAAATTTCTGTGAAATCTTGTAAGATCAATGGTTATATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : CAGGAAACCCAAATCTTTGATTTGGCATGAGTCGCTTACTCCTTCGAGAATGGGAGAAGGAGTTTCATTAATGAGCATAGTATATATTTTATATATAATTAAATTTCCCCAAGCGAATTCAAATTTAAAACCTATTCTAGCCATTGATATATAAGGATTAGGATAGGTTTTTATTATGTATTTATGAAAAATAAGAATCGGTTGAGAAAATTTCTATAAAACCTTGTAAAATCAATGCGTATATGTTATTCTTGAAAATAAGGAATGGCTATTTTACTATGGCTGAACCTTAACATAGGATGTATTTAAATGATATTATTGTTACATTCTTAAAAGGTTCATCTTTTGTTGAACCTTAACATGAGATGTATTTAAATTAATTAACTGTTTTATCTGGTGTATATGTGTTCCCGTTGAACCTTAACATGAGATGTATTTAAATTGGCAAAATGTTTTGAGAGTTGCCTGTCCTGGAATAAGTTGAACCTTAACATGAGATG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATAGAATGTATTTAAAT # Alternate repeat : GTTGAACAATAACATAGGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 3 58070-58609 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFOX01000013.1 Clostridium botulinum strain Hall 80 20497_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================================================================================== ================== 58070 30 90.0 36 .C.............AG............. GATATTATTGTTACATTCTTAAAAGGTTCATCTTTT 58136 30 100.0 35 .............................. TAATTAACTGTTTTATCTGGTGTATATGTGTTCCC 58201 30 100.0 37 .............................. TGGCAAAATGTTTTGAGAGTTGCCTGTCCTGGAATAA 58268 30 100.0 36 .............................. ATATCTATATAATTAAAATCAGCAAATTCCTTTCTC 58334 30 90.0 36 .......AG......A.............. GAATCTATAGTAGTTTCATTTGTTAAACCAGACGAA 58400 30 90.0 115 .......A....................GC AGAGAACCCAAATCTACGATTTGGTGTGAGTCGCTTACTCATTCGAGGTGAGGAGAATGAGTTTCATAAAACAATCAAAGCTTTATTATTTTAAAATTAAATATGCTTTTAAATC 58545 30 86.7 3 T................A........T.C. ATG GC [58565] Deletion [58580] 58580 30 80.0 0 .......AA......A..........G.GC | ========== ====== ====== ====== ============================== =================================================================================================================== ================== 8 30 92.1 43 GTTGAACCTTAACATGAGATGTATTTAAAT # Left flank : ACAATAACATAGGATGTATTTAAATCTTTTCCCGGAAAGAAAAATCCAAGACATAGAATTGTTGAACATCAACATAAGATGTATTTAAATCCGAGTACTGGAACTTTATCTTCTAATTTAATATGTTGAACATTAACATAAGATGTATTTAAATCAAACAATAATTCCATCAATTACATTATTATTTTTTGTTGAACAATAACATAAGATGTATTTAAGCAGGAAACCCAAATCTTTGATTTGGCATGAGTCGCTTACTCCTTCGAGAATGGGAGAAGGAGTTTCATTAATGAGCATAGTATATATTTTATATATAATTAAATTTCCCCAAGCGAATTCAAATTTAAAACCTATTCTAGCCATTGATATATAAGGATTAGGATAGGTTTTTATTATGTATTTATGAAAAATAAGAATCGGTTGAGAAAATTTCTATAAAACCTTGTAAAATCAATGCGTATATGTTATTCTTGAAAATAAGGAATGGCTATTTTACTATG # Right flank : CATAGAACCCCAATCTGTGATTTAGGGTGAATCTCTTACTCATTGAGATATGGAGAATCAGTTTCATAAAACAAGTGAATCTGAGTAGATTTTTATTGACTAAAGTATTTTTGAAATTTAGTTTTAAGTTTAGGTTGTATTTTAGAGTGCTGTTGGAATTTTAAACCCCATTAAAAGAAGTTAAATATTTTTCTTTTAATGGGGGCTATATAAATTGCTAGATACTAATTATTTAAAAATTTATTTAATGAATCATTGTCTTTAAATAAGTTTTCTAAGTTCCCATATTTTTGTTCTAAATTTTTTCTATCATATTTATAGGATTCTTCTCCTATATTGGCTACATTAAATTTAATAATTTCAGCGTTTGGTATAAGAGATAATAATACCACTGAATTCTTTTCTAAAAGCTTGTTAGCTTTTTTGTCACTCCAAAATTTATTATAATTTTCTTCACCTAAATTTTCATTTGCTTTATAGTTAACAGTTATTTCATATGG # Questionable array : NO Score: 4.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-1.53, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 4 63989-64676 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFOX01000013.1 Clostridium botulinum strain Hall 80 20497_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 63989 30 100.0 35 .............................. GTGTTTAATCCTATTGTATCAAGCCCCGCATCTTT 64054 30 100.0 34 .............................. CTGTTAAATTATTTAAATAATTTCCTCCAAAGTC 64118 30 100.0 36 .............................. ATTCACCCCTTCAAAGTTCACCATAATTTCAGTTTT 64184 30 100.0 35 .............................. GAGGTTCAAATCCTTTTATCTCCAAAGGAATTCCG 64249 30 100.0 36 .............................. TTGGTACAATTATAAAGAGTTGAAGATAAACTATGA 64315 30 100.0 37 .............................. TAAATTTTAATAATATTTCCTTTTGAATCTCTTATAG 64382 30 100.0 35 .............................. TAAGGTTACAGAAGCTAATGATAGAATGGAATTAA 64447 30 100.0 36 .............................. GATGAATTATTATGGCATGGCGAGAGATATAAAATA 64513 30 100.0 36 .............................. AGAATTTGTAAAAGAAAAATTAAAAGCTCCTGCAAC 64579 30 100.0 38 .............................. TAAATTAGGCTATGAAATAAAACAAACAGTGGGAGAGT 64647 30 90.0 0 .......................C.G...A | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 99.1 36 ATTGAACATTAACATGAGATGTATTTAAAT # Left flank : TATTTACAAATTAAAATTATTTATGCAATGGGGGAAAAAATGATTTTAACCATTGATTGTTTTAGATATATGTATTTTTTGTCACAGTAAAAAAACTAGAATACCTGGTACAGAGGATATGGATAAAGAATATAGAAATCCATGGCATCATATAAAAGGAGCTGGTATTGGAACTATAATAGGTGCTGTAGTAGCATTATTATCTGGAGGAATGCTTCATTTCATATCAATAATATAGTATTTAAGCAGGGAACCCAAATCTTAGATTTGGTGTAAGTCGCTTACTCCTTGGAGAGTAGGATAAAGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTTAAAACCTATTCTAGCTATTGGTATATAAGGCTTAGAATAGGCTTGTTTTATGTATTTATTAAAAAACGTAATCACTTGGAAAACTTTCTATAGAACCTTGTAAAATCAATGGCTATATGCTATTCTTAAAAATAAGGAATGGCTATTTTGCTATG # Right flank : AAAACAAATAACGATGAAAAGATAACAAATAATAATTAAGGTGGTTTTTCATTGACAAGGTTTTTCAACATTTTGAAATTGAAAAACTAACAGCAAATATTATACAGAAAACTATAGAGAATCAATTATAAGCAGTAAAATCTAATTTTATAGTTAGTTTTTTTATAGAATTTTATAGTTAAAAAATTAAACATATAAATATGTGTTTATTTTTTATATAAATTTGATATAATATAAATAAGAAAAGCTTAGTGTTGGAGCACTAAGCAATCCTTAGAACATTTATTTTGTTTTAGGGCTATTGGATGAATTTAATAATTAAATTTGAGAGATTAAAGCACTATTCTTGGTCGGATGGGTGCTTTTTCTCTTTGCCATTAAGTTCTATGTGAATACCAAGAAATTTAATCTTGATAACTAGTTTAGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATGGTTAATTCTAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 5 65588-66335 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFOX01000013.1 Clostridium botulinum strain Hall 80 20497_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 65588 30 100.0 35 .............................. TGATATAATGTTGACTAATTCATGATATTATGATA 65653 30 100.0 36 .............................. ATTTTATGGAGGTTATCAAAAGTGAGTTGGGAGGAC 65719 30 100.0 35 .............................. AGGTATAGAAAAAATAAAGAAAACAACAGAGGAAA 65784 30 100.0 36 .............................. TTAAACAGTTTTTTAGCCTCTTTGACTGTGATTGTA 65850 30 100.0 35 .............................. AAAAATTTTAAATATGATGATTCTTCATCTTGTAT 65915 30 100.0 36 .............................. GATATTTCTTTTATAGATTTAGAAAAAACTTTAGCT 65981 30 100.0 34 .............................. AAGTTAAAGTGACACAAAAAACCTGTGATGAGGG 66045 30 100.0 36 .............................. TCCTTAGAAAGTTCACACACATAACTTGTATACCAT 66111 30 96.7 35 A............................. GAAAGAACTAGAGCTAGTATTTTATATGAATTATC 66176 30 96.7 35 A............................. TGATGTGGAAGAACTTTAATCCTTTGGACGAATTC 66241 30 93.3 35 A............................T GAAGAAACTATAAAAACATTAAGCATTATAAAAGC 66306 30 83.3 0 ...............G....AG......GT | ========== ====== ====== ====== ============================== ==================================== ================== 12 30 97.5 35 GTTGAACAATAACATAAGATGTATTTAAAC # Left flank : GATAACTAGTTTAGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATGGTTAATTCTAGCATATCCAATACCACCCCCTATTTATAAGTGAAAGACTCACCAATATCCTAGGAGGATAAAATATTCAAAACCCCCGTAGCCATCCACTACGGAATTACTATCCTAACTTGGATATTATATCATAATTATCTATACTAAAAACAGAGGAATTAAATGGTAAATAACATTTTAGTTTAGAATACTACGTTTATTTTAGGATAAAAATAACAAATAATTATATAGAATACGCTAATATTTTTCCAACCAACTTTAGCTTACAAACCTATATTAGCTCTTGAAATATAAAGCTTAAGGTAGGCTTTTCTTATATATTTATAAAATATTATAATCGGTTGGAAAATTTTCTTTAAAACCTTGTAAAACCAATGTCTATGTGCTATTCTTAAAAATAAGGAATGGCTATTTTGCTATG # Right flank : TAGAGGAACCAAATTTGTTATTTGACGTAAATTGCTCACTTTTTGGAGAGTATGGGAAGGTGTTTCATTAATTGAATTTTTCCAGGCACAATAAATTTTAAAACCTATTTTAGTTATTGAGATATAAAGCGTAGGATAGGTTTTTACTATGTATTTATGTAAAACCAAAATCGCTTGGAAAACTTTCTTTAAAACCTTGTAAAATCAGTGTTTATATGATATTCTTGAAATTAAGAAATGGCTATTTTACTATGGTTGAACAGTAACATGAGATGTATTTAAATTGGCATAACAATACAAAAAGAAATAAAAGTAAAAGGTTGAACAGTAACATGAGATGTATTTAAATTGTTTCGGAGATTGGCTTCTATAAAACTTATCTACGTTGAACAGTAACATGAGATGTATTTAAATGGGATTTCCTCATTAAAACATCTTCATTTGGAAGGTGTTGAACAGTAACATGAGATGTATTTAAATTTGCCTAGATTATTTAACAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATAAGATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 6 66589-66945 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFOX01000013.1 Clostridium botulinum strain Hall 80 20497_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 66589 30 100.0 35 .............................. TGGCATAACAATACAAAAAGAAATAAAAGTAAAAG 66654 30 100.0 35 .............................. TGTTTCGGAGATTGGCTTCTATAAAACTTATCTAC 66719 30 100.0 36 .............................. GGGATTTCCTCATTAAAACATCTTCATTTGGAAGGT 66785 30 100.0 37 .............................. TTGCCTAGATTATTTAACATTGTGCTTGAAGAAAATT 66852 30 96.7 35 ........A..................... GTGGTAGTAAGTACATTACTCTTTGAGAAAAAATC 66917 29 90.0 0 ........T......A.......-...... | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 97.8 36 GTTGAACAGTAACATGAGATGTATTTAAAT # Left flank : ACACACATAACTTGTATACCATATTGAACAATAACATAAGATGTATTTAAACGAAAGAACTAGAGCTAGTATTTTATATGAATTATCATTGAACAATAACATAAGATGTATTTAAACTGATGTGGAAGAACTTTAATCCTTTGGACGAATTCATTGAACAATAACATAAGATGTATTTAAATGAAGAAACTATAAAAACATTAAGCATTATAAAAGCGTTGAACAATAACATGAGATAGATTTAAGTAGAGGAACCAAATTTGTTATTTGACGTAAATTGCTCACTTTTTGGAGAGTATGGGAAGGTGTTTCATTAATTGAATTTTTCCAGGCACAATAAATTTTAAAACCTATTTTAGTTATTGAGATATAAAGCGTAGGATAGGTTTTTACTATGTATTTATGTAAAACCAAAATCGCTTGGAAAACTTTCTTTAAAACCTTGTAAAATCAGTGTTTATATGATATTCTTGAAATTAAGAAATGGCTATTTTACTATG # Right flank : TTGGGATATGATTTTTACATTAATTAAATAATAATCGTAGTTTATTATAAATAGTATGGAGGTAGATTTTGAAACTTAAAGTAGTATTTTTAATTAGTTTTATTATGTTTATTCTTGGTATATACTTTTCCAATAAGTCTAATTTTATGATTTTAATTGGAATATTAGGTGGAGGAATAATGGGATGTGTATCAGCATTTGTAGGGTATTCTAGAACAAATGCTATTAAAGATAAAGAGGCTAGTTCATAAAAGAATTAATTTTTTATTATCTCATGGATTAAGTATGTGTTAAAGTTTTCAATATTAACATAAGAATTAAAAATTAATATTATATATGATAAAAATTACTAGAAGTCTTAGAAAAATCTAAGGCTTTTATTTTATGCAAAGATTTAGAATGGAATATGATAGGTAATTAATTTATTAATAAAAATAATAATATTTTTAAAATATAAGTAAAATAATTAGTTATATTAACTAAAAGGTGTATGGTATAAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 7 77697-78583 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFOX01000013.1 Clostridium botulinum strain Hall 80 20497_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 77697 30 100.0 34 .............................. GACATATTAGTTAAAGTACGACTGCCAGTTGCAA 77761 30 100.0 35 .............................. GATGCTACGCAGGTAGTAAGTAAAGATGGCTTTGG 77826 30 100.0 36 .............................. TATGTATTGCATACTAAGTCAATAATTTGATTTTCT 77892 30 100.0 36 .............................. TTAGATTATCTCTTATCAAATCCTCCACTTTAGCGA 77958 30 100.0 37 .............................. GATGCTTGGAAAATTAAGAACATAGGTTTATCATCCC 78025 30 100.0 36 .............................. TCATATAAATATTCTCTTTTTAAATCTGTACTAAGT 78091 30 100.0 34 .............................. GAAGTTTATGAAGTTGATCCTATAAGAATACAAC 78155 30 100.0 34 .............................. CTCTTTCACCTATTGGTGTTTGACCATTTTTCTT 78219 30 100.0 37 .............................. AAAGTATTTTTAACTGTATTACCTAAAATGTTATTTA 78286 30 100.0 36 .............................. CAATATTTGCATTTACATTTTTTACATTCTTCTTTA 78352 30 100.0 36 .............................. TCCTCAAATAAGAAAGTGGTACCAAGGCTTTAATAT 78418 30 100.0 34 .............................. TATTTTTCTTTAAAAGATTTATGCATTATTCTAT 78482 30 96.7 38 A............................. TCTATAGAAGAACCAGCAGATTTGGCAATAGGTGTTAA 78550 30 90.0 0 ......T........G......G....... | G,AG,T [78569,78575,78579] ========== ====== ====== ====== ============================== ====================================== ================== 14 30 99.0 36 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : TATTTTGAATTTATTATTGTTGACTAAAGGAATAGTAAATTATTTCAACAGAGCAACAGGATAATCTTTTTAACAAATACCTATACAAAGTATTGTTCTATGGAAATGCATATGAAAACTATTATTGCATAATTTGGTGGGGAAGAAAATAATTATAAATTGATAGAAGAAAGAGAAGCAATGTATCAATTAGAAACCTTAAAGAGGGATAAATATTACATGAAGTTAACAGATGATATTTAAAAAAGTTCTTGTTTAGGTATATAAGCAATTTTCACTTTAAGCATAATAAGCTCTACTTGTTTTTTAAATATTAATTTGAATTTTTCCAAGTGAATTTAATTTTAAAATCTATTCTAGCTATTGACATTGAAGGCTTATAGTAGGTTTTTATTATGAATTTTTAAAAAACAAAATCACTTGGAAAACTTTCTTTAAAACCTTGTAAAATCAATGCCTATATGCTATTCTTAAAATTAAGGAATGGCTATTTTCCTATG # Right flank : TATTGTAGACACAGAAAGCTGATCACATTACAGTATAAATAAAAGAAGGATGTGTTAGAAATGGTAAGAGGTCAAAAACAATATACGGAGGAATTAGAAAATAAATAATACAAAAATTAAATGTTTAATAGTTTTTATTCTATGGAAAGAGATGGATTCTATAAAAAAATAGATTGTATGTTTTTAGGATTAGAGAATTAAGTGAAGAATTTATATAAATTAAATGATCAAATTTCTTTTCATACAAGAAAAGCTTTAACCTATTTGAAATTTATAAGTTATGAGGGGGTTTAATATGACATTACCTAAAATAACCCAAGAGAATGTGAACATATTTATTCCACTTAAGGCATCAAAAATATCATATAGATTTGCTAAGGAACATCATATATCTCAAAAGCAAGCTTTATTGGAGTCCTATAATTCAAAAACCGATGAAGCTTTGGAAAGAGAATAAACTAAATTATGGTATGAAGGTATCAATTATTTATATGAAGAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 8 79352-80170 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFOX01000013.1 Clostridium botulinum strain Hall 80 20497_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 79352 30 100.0 36 .............................. GCCAATTGTGAAGCTGTATCCTCTTTGAATTTATTA 79418 30 100.0 36 .............................. CAAGCTAATTTTTGCAAACATTCTTTACAAATTGGA 79484 30 100.0 34 .............................. AGTCGTGCCAGTTCCTTAGAAACTTTGTTTTGAC 79548 30 100.0 36 .............................. GTAAAACCAACCCCAACACCTTGGGCCATGTATTTA 79614 30 100.0 36 .............................. CGATTTTTTGTTTTTATGCCAAAAATTCAGTGGAAT 79680 30 100.0 36 .............................. TTAAGATTTACTTTGTTTCTTCTATTAACGAAAACT 79746 30 100.0 35 .............................. TAAAATTTTTCTTCTTGATTAATCTTTTCTCCATC 79811 30 100.0 36 .............................. CCTTTAGTCACCTTTGGAATTATGTTGTTAGCAAAC 79877 30 100.0 37 .............................. TTGTTTATTGTTGAGTATCCGGTGCTAGTTTGCTTAG 79944 30 100.0 36 .............................. AACAATATCAAATATCTATATTTTAAAATATCCCAC 80010 30 100.0 36 .............................. CCAACTATTATTACCTCTTTAACTTGTAATCTTTTT 80076 30 93.3 35 ...............AG............. TCTACTTTTCCTTTAAACCCTAAATCTAAAGTACC 80141 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 99.2 36 ATTGAACATTAACATGAGATGTATTTAAAT # Left flank : ATTTATAAGTTATGAGGGGGTTTAATATGACATTACCTAAAATAACCCAAGAGAATGTGAACATATTTATTCCACTTAAGGCATCAAAAATATCATATAGATTTGCTAAGGAACATCATATATCTCAAAAGCAAGCTTTATTGGAGTCCTATAATTCAAAAACCGATGAAGCTTTGGAAAGAGAATAAACTAAATTATGGTATGAAGGTATCAATTATTTATATGAAGAATTAGAAGAAGAGAAAGATTTAAAAAAGTAACGAAATTTTTTACACCTAAATCTATCATATTTAATATACTACACCTAATTATGCGTAAAATATTTTTCCAACCAATTTCAATTTTAAAACCTATCTTAGGCATTGAAATATAAGGCTTAAGATAGATTTTTGTTATGTATTTATGAAAAGTGGGAAACGGCTGGAAAATTTTCTGCAAAACCTTGTAAAATCAATAGGTATATGATATTCTTTAAAATAAGGAATGGCTATTTTGCTATG # Right flank : CTTAAATGAGTATGAAAAATTAAGTATAATTTAACCACAACATATGATGTAAAATCATTATAAAGATTATAATCTTTATAATGATTTTTTAATATTAAAAAAAATAATATATAATATTATAATCATATGGAGAATGTTGATTAAATATAAATAATGTGGTAATATAGAATAAAAATTTAGAATATTGTTAATATTCAATAAAAATACAATTGAAGACTGGAGGTGAAATAATGGAAGTATATGAATTAACACTAAAAATATTTCTCCTCAAAGATTTAACAGTGGACAAGTCTTATGAAAAATTAACAGAATTAATTGACAAATCTTTATGTAAAGATGATGAATTATTAGCTTTACATAATGAAAATAAGTATAAATACTATACTTTTTCATTACCTTATAAATTGGAAAAAGACAAAGTATATAAAGCTGGAAATATATATTCAGTAAAAATAAGAACTATTGATGAGAAAATATTAAAGAATTTCAAAACTCAGCTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 9 89708-90132 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFOX01000013.1 Clostridium botulinum strain Hall 80 20497_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 89708 30 100.0 36 .............................. ATCTTCTTATAATTGAAATATTCTTATCTGCCATTT 89774 30 100.0 37 .............................. TAAATTACAACCCCGTCAGTTTCATTTAAAGGGTTAC 89841 30 100.0 36 .............................. AATTAAGAAAAAATAATATAGTTGCCAGGGAGTTAT 89907 30 100.0 35 .............................. ACGTGATGCAGATGCATATGAGATAGCATTAGCAG 89972 30 100.0 36 .............................. TCTTTAATTAAGTCAAACCCATTATTTAAATCATAA 90038 30 100.0 35 .............................. TATAGTTCATAAATATTATTTGTATCATATGTATC 90103 30 83.3 0 A.....C.T...................GC | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 97.6 36 GTTGAATAGTAACATGAGATGTATTTAAAT # Left flank : TAAAGGAGAAGATGTAGATGGGAAAAGGATTTAATTATAATTATGCTTTTGTTTTTTATGATGTTAATGAAAAAAGAGTAAACAGAGTATTTAAAGTTTGCAAAAAATATTTATCTCATTTCCAAAAATCTGTATTTAGAGGAGAAATAACACCAGCAAACTTAATATTATTAAAAAGGGACTTAAATAAAGAAATAGATGAATGTGAAGATTTTATATGTATTATAAAGCTAATGAATAATAATGTATACGGAGAAGAAATATTAGGGAATAAAGCAATGACAACAGGAGAAGATTTAATATTATAAAAAAATGGAATCAATTTTTCCAACCAATTTTAATTTTAAAACCTATCTTAGGCATTAAAATATAAGGCTTAAGATAGGTTTTTATTATGACTTTATGAAAAGTGGGAATTGCCTGGAAAATTTTCTGTAAAAGCTTGTAAAATCAATACTTCTATGGTATTCTTGGTTTTAAGGAATGGCTATTTCCCTATG # Right flank : CAGAGAACCCAAATCTGTGATTTGGCGTGAATCGCTTACTCCTTAGAGGCAACGAGAAGGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTACAAACTTATTCTAGCCATTGATATATAAGGCTTAGGATAGGTTTTTGTTTTATATTTATAAAAAAGTAAAATCACTTGGAAAACTTTCTTTAAAACCTTGTAAAATCAAAGGCTATATGCTATTCTTAAAATTAAGGAATGGCTATTTTACTATGGTTGAACAGTAACATAAGATGTATTTAAATTGAAAAAGGTGGTTATAAGTTTACTAATAGGATTAGGTTGAACAGTAACATAAGATGTATTTAAATTATACAAAAACAAACTGGATTGATGGATTTACTCCGTTGAACAGTAACATAAGATGTATTTAAATTATATATATAATTGAATTTCGATGTTTTTCTAGTTGTTGAACAGTAACATAAGATGTATTTAAATTTTTTTATAAGTTGTGGTGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAATAGTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 10 90386-91198 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFOX01000013.1 Clostridium botulinum strain Hall 80 20497_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 90386 30 100.0 36 .............................. TGAAAAAGGTGGTTATAAGTTTACTAATAGGATTAG 90452 30 100.0 35 .............................. TATACAAAAACAAACTGGATTGATGGATTTACTCC 90517 30 100.0 35 .............................. TATATATATAATTGAATTTCGATGTTTTTCTAGTT 90582 30 100.0 36 .............................. TTTTTTATAAGTTGTGGTGGTACATTAAAAGCTATA 90648 30 100.0 36 .............................. ATGATTATCACTAAGGAGAGTGAAAAATGAAAGTTG 90714 30 100.0 35 .............................. TTGTCAGTAATATATACAGTCTTGTCCCATGCAGG 90779 30 100.0 35 .............................. GTAATAATATATTTTTTTAATTTTAAAACTTCCTC 90844 30 100.0 36 .............................. GGAATTTCATTTAATATAGCTGTGTTATGTACTATT 90910 30 100.0 34 .............................. TCATAAATAAATCGACCATCATTTATAATTTTCT 90974 30 100.0 36 .............................. TTATTACAATATTCAGGTATAACAACTGTAAAATTG 91040 30 100.0 34 .............................. TATTTTAAATATTAAATAAATAGAGGTGATTTTA 91104 30 100.0 35 .............................. GATGAAACCATAGTAGCTAATCATCCATGGGCCAC 91169 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ==================================== ================== 13 30 99.5 35 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : ATATAGTTGCCAGGGAGTTATGTTGAATAGTAACATGAGATGTATTTAAATACGTGATGCAGATGCATATGAGATAGCATTAGCAGGTTGAATAGTAACATGAGATGTATTTAAATTCTTTAATTAAGTCAAACCCATTATTTAAATCATAAGTTGAATAGTAACATGAGATGTATTTAAATTATAGTTCATAAATATTATTTGTATCATATGTATCATTGAACATTAACATGAGATGTATTTAAGCAGAGAACCCAAATCTGTGATTTGGCGTGAATCGCTTACTCCTTAGAGGCAACGAGAAGGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTACAAACTTATTCTAGCCATTGATATATAAGGCTTAGGATAGGTTTTTGTTTTATATTTATAAAAAAGTAAAATCACTTGGAAAACTTTCTTTAAAACCTTGTAAAATCAAAGGCTATATGCTATTCTTAAAATTAAGGAATGGCTATTTTACTATG # Right flank : CAGAGAACTTAAATTTGTGATTTGGTGTGAGTTGCTTACTTCTTGGAGGAGAGGAGTAGAGTTTCATTAATTGAATTTTTCTAGGTACAATAAATTTGCAAACCTATTCTAGCCGTTGATATATAAGGCTTAGAATAGGTTTTTATCATGTGCTTATGAAAAAACAGAATCACTTGGAAAACTTTTTCTAAAACCTTGTAAAATCAATGGTTGTATGATATTCTTAAAAATAAGGAATAGCTATTTTGCTATGGTTGAACCTTAACATAGGATGTATTTAAATTCATCTGTTATATCTATACCTAGAATTTTTATAAAAGTTGAACCTTAACATAGGATGTATTTAAATTTGTGAATGTATAGGGAAAAATGACCAAATGTTAGTGTTGAACATTAACATAGGATGCATTTAAGCAGAGAACCCAAATCTATGATTTGGTGTGAATCGCTTACTCCTTAGAGAGTGGCATAAGGATTTTTATAAAACTAAACTATGCATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //