Array 1 9154-7308 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQJ01000037.1 Methanosarcina mazei strain 1.H.A.1A.6 scaffold64_1_size21163-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 9153 37 100.0 38 ..................................... CTCTCCTATTAGACGGAAACCGCTTTACTGGCGAATAT 9078 37 100.0 36 ..................................... AGTTTTGTATATACCCCTGTTCTGATTTCTGCCCAT 9005 37 100.0 33 ..................................... TTCACTGATTGGAAACATAGAGAAATAAGCTAT 8935 37 100.0 36 ..................................... CTCCATCTCCTGCGGTATCATGGATATAACAGTCAT 8862 37 100.0 37 ..................................... TAATATAGATTGCAGGATCAATAACGCAGCCCGTATC 8788 37 100.0 36 ..................................... GGAGTTTAGGCCAGATCTTGAGAAAGTAAAAGATAC 8715 37 100.0 34 ..................................... ATAAATGAGAGTTTTGGCGGTAAAACCAAAATAT 8644 37 100.0 36 ..................................... AAAACCGCGTAAGCTGTCCCGTTATCAAGCTTAATA 8571 37 100.0 35 ..................................... ATGAAATTGTCATGAATATAGGCATGGTTGCTATC 8499 37 100.0 33 ..................................... ATTATTTCCCTTGTTTACATATACCCCGGGCCC 8429 37 100.0 37 ..................................... TGAAGCCTTCAATCTCGTAATCATCTAGTTTAGTAAT 8355 37 100.0 33 ..................................... ACCTCGTCCTGCATGGCCTTGATAGTCTGCCAT 8285 37 100.0 36 ..................................... AGAAATCAAATCCCGTCGTAACAAAAGACTGGCTCC 8212 37 100.0 35 ..................................... GATGAAGGGGCTCAGGATAGAATAGATCAAGTTGG 8140 37 100.0 36 ..................................... AGTAATGCAACCATTTTCAACAGTCGGAAGCACCAT 8067 37 100.0 37 ..................................... GGAATAATCACTCATTTTATTATATGAGGAAAGTAAG 7993 37 100.0 33 ..................................... CGTTGTTCTGAAGGTATCCCCGCTTAGAGCCAC 7923 37 100.0 36 ..................................... GGAACTGTCGGCACGAATGATGAAAACGACATCTAC 7850 37 100.0 35 ..................................... TCTATCTTTCATGCAAGGCACACAGGAACTCTAAC 7778 37 100.0 35 ..................................... TATGTTCGGGCTTGCTTTTCATGCGAATATACTTT 7706 37 100.0 34 ..................................... CGAAACTCCAGGAATGAGGCCTCAATCCAGGAGC 7635 37 100.0 35 ..................................... TCAAAAGGCCAACTACCCACAAGTAAAAGCAGCAG 7563 37 100.0 38 ..................................... CTGTCGGTTGTTTGCTTCGATTGTCGCATACCCCGATT 7488 37 100.0 33 ..................................... ATTCTGACAGGAGTTACATCTGCCCCCGATACG 7418 37 100.0 37 ..................................... TTTAAAGTAAAACACGAACGCATGAATGCACTAATAG 7344 37 83.8 0 ..T.....T.A.....................A.G.G | ========== ====== ====== ====== ===================================== ====================================== ================== 26 37 99.4 35 ATCGCAATCGGTTAGAAAACTCGTTAGAGATTGAAAC # Left flank : GCATCCTCATTTTAAGTATCAGGTTTCCCGAAGAAAAGCGGTCAGGATGCAGGCAATATTACTACGAAAAGCTATCACAAACGAACTTCCTATGTATTATCCTCTGGTGTTTAAAAGATGAGGCTAGTAGTTACATATGATATAAGCGACAATAAGATTCGTAACAGGGTTTATAGAATCCTTGAAAAATACGGTGCATGGAAACAGTACAGCGTATTCGAACTTGATATTACTGCAGTGCAACGTGTAGAAATGGAAGATGAAATCAAAACAGAAATTGAGTCTACTGATAAAGTACGCATCTATAGCCTTTGTGACCGTTGCGTAAAAAATATTGTAGACATCGGCCAAAAGACTCCAGATAAAAAGTCAAACATTGTTTAACAGCTTTTTACATTGATGTTTATATATTCTCTGTACGCAAGAGGTTTGGGAATTAATGATTATTTTTTGAGGTTTTAGAAAGGGTTATTACGAAAAAAAACCCTTATTTTCATGCC # Right flank : CCTATCCGAAAAATGTTGTTACCTGTGTAGATGCCCGACATTAATATTTATCGAAACTTCTACAACAGCCAATATATATCCTCAGTGCGGTAAAGAGTCTTAGAGACATCTGGAAGAGAAAAAAGAAGAGCTGGAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAATATCCTGAAAGAAATTGGAAGGTAAAAGACATACAGGAAGAGACCTAAACTGTATTATAGCATAATAAGAAAAGAACTTCTGGCAGGAGGAATAAAAACTATGACAGAAATGACTCTAATCGAAGCACTGAAAAAACTTGCATTAATCACCAAAAAAGGACTGGATGAACTGATTCATATCCCAGGTAATACAAGTGGACCTATTACAATTGGTGAGGCAATTAGAGAAATACAGGATCACGATTCTGACATTTCTGAAACTGATGATTATATAATAGGTAGTGACGGTATTTGGAAAACAGGGGAAGATGGAAGCGAGATAGTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCAATCGGTTAGAAAACTCGTTAGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 17541-12255 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQJ01000225.1 Methanosarcina mazei strain 1.H.A.1A.6 scaffold9_1_size49473-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 17540 37 100.0 37 ..................................... TAAAAAACCTAATGATATTCATGCCACCACGACACGG 17466 37 100.0 36 ..................................... TAGAATGGGTACTAACAATACTGATAGTTTTCACAC 17393 37 100.0 36 ..................................... TCAGGAAGAGGGGTTCACTCATGCTCCTGTTATTTA 17320 37 100.0 34 ..................................... ACATATTGAGAATATTGTGCTCTCCGTAAATAGT 17249 37 100.0 35 ..................................... TAGACCGACTCTGTTTTCACGACATCCGTGTCAAA 17177 37 100.0 39 ..................................... AACAGTATCGGATACCGTTTTTGTTTACGCTCCAATCGT 17101 37 100.0 37 ..................................... TTTTTAGTAAGTATCATGCTTTCAGGGAACAATTCAA 17027 37 100.0 36 ..................................... TGAGGGGAAAAAAGAGAATATCCAGAGAGCTCAGGA 16954 37 100.0 37 ..................................... AAAAAAAGAAATTAGTGTCCCATCATCTCAATTCTCA 16880 37 100.0 36 ..................................... AATTTGTTGATGAAATCCCAAGAGGAATAACAAAGT 16807 37 100.0 36 ..................................... GCTCTCTTTTTGGGGTCCCTCAAGAAATTCAATACC 16734 37 100.0 35 ..................................... CCCGTTCCTGTACCTGCTTCTATCTCTACACTCTC 16662 37 100.0 35 ..................................... TATACATCTTACACCAACGCGTAAGATAAGTTTTA 16590 37 100.0 36 ..................................... CCAATTCCATTCTCTACACGATCCATGTTTTCAGGT 16517 37 100.0 37 ..................................... TTGACATACAGTTAAATAAGACGTTTAAGTATATTAA 16443 37 100.0 35 ..................................... CCCGATTCATAAAATAATTCATTAATATATATTTC 16371 37 100.0 36 ..................................... AACATTTTATTCCCTCCAAGACAATCCAGCATCGAA 16298 37 100.0 34 ..................................... TAATATGGCAACATTAACACTAACACCAGGCACT 16227 37 100.0 35 ..................................... TAGTATTAAGTACTAGTACTAGTACTTAGAAGAAA 16155 37 100.0 36 ..................................... AATATTTTGTATGCATTTATGTATACAACATGCCAA 16082 37 100.0 36 ..................................... TTGAATATCCAACCACAAACCACACATTCAAATCCC 16009 37 100.0 36 ..................................... ACTTTTTTCTGCGAGGTATGAACATGCCTAAATATC 15936 37 100.0 35 ..................................... AGCGATTCCGCGATTGATTCAAAAGCAGTTAATAA 15864 37 100.0 39 ..................................... CAAGTATAGCAGCCCATCTCGTTTTCTTGAACGCGAATG 15788 37 100.0 35 ..................................... TATACTGCATCCGAGACAATGTTAATAAGTATAGA 15716 37 100.0 36 ..................................... ATCTATACAGAGGTATATTGTGGAACGTTGAGTTTG 15643 37 100.0 35 ..................................... CTGTCCTCAGTCCGTGCCTTCAGGAGGATCCCGGT 15571 37 100.0 37 ..................................... GTTCTTGGGTCACACCCATAGCATGTCTTCTAAGTTT 15497 37 100.0 35 ..................................... GAAACTATACAGAGCGTAATACAGAGAAGGAAGAT 15425 37 100.0 37 ..................................... ATTGTGCTCAAAACATTGTAAGTTTTATTTTCATTTA 15351 37 100.0 35 ..................................... CCCATCCTATAAATCCACAAAGGACATTGAGAAAA 15279 37 100.0 35 ..................................... TAATAAAGTCGCTGCTTTCCGGGCTTGTGCTGCCT 15207 37 100.0 35 ..................................... TATATCATTGAGATATAGTAAGATTAAGTTAAAGT 15135 37 100.0 37 ..................................... TCTTCGATCCAGACCATAAAATCCGAATCTTCTAGTG 15061 37 100.0 35 ..................................... GTTCTGCTTCATGCCCGACCGCATAAATACGAAGT 14989 37 100.0 37 ..................................... TGGAGTGTTTCACCTAAACTCTTCTTACAGAATTGGG 14915 37 100.0 35 ..................................... ATTTCCATCCTGTATTTTGGGAGGAGAATATCACA 14843 37 100.0 38 ..................................... CGCTCAGGAACTCTCTAAAAAGCATAACATGACAATAG 14768 37 100.0 35 ..................................... CTGTGCCAACAACCTGATCTACCCTGTGCGAAGTC 14696 37 100.0 37 ..................................... ATTTATGACGGGGCAACTCCGCTTTTAAGAAATCCAA 14622 37 100.0 42 ..................................... GAAGCTGAATAATTAGCAATTGCTTTTGCTACGCCTGACTTT 14543 37 100.0 37 ..................................... TCTTCAAGGCACAGAACATAATCATTAAAGTCTTCAA 14469 37 100.0 37 ..................................... CAGAATTTTGAGGACCTATTTCTAACACTAGCACCAC 14395 37 100.0 36 ..................................... TTCAGCGATGAATATGGAAAATACAAATTTGACCTT 14322 37 100.0 40 ..................................... CCTACTTTATCACCAGGCTTTCCAACTCCGGCGAGTTCTT 14245 37 100.0 35 ..................................... CACAGGCACCTACCCTTGTCATAGAGTTTCGCCAA 14173 37 100.0 35 ..................................... CATATTTTTGCACCGAGCCAGTAAAAGAAACATTA 14101 37 100.0 36 ..................................... TATAATGTCAAAGAGTATCCTATTTTGTCCTAGAAT 14028 37 100.0 34 ..................................... ACCCTGCTTTCGGGGCTGTAAAACTTGACGGTAT 13957 37 100.0 34 ..................................... TGTAATAGTCGAGTAAACAAACGCATAGGCAAAA 13886 37 100.0 35 ..................................... TGAAAATATAATAACTGCTTCTCCCTCTGGAAATC 13814 37 100.0 35 ..................................... CTTCACGGAGAAAGATAAAGCCCGGTTAATGGAGA 13742 37 100.0 35 ..................................... TCCGAGGTTTTGATATGGTCATGCCGGCAGAATGG 13670 37 100.0 36 ..................................... CTCAAACGCTCATTAAAAGGGCTTCGCTAGATGAAT 13597 37 100.0 36 ..................................... AAAAAGCCGTACATCGTAATGGTGAACTAATAGAGT 13524 37 100.0 38 ..................................... GTTAAACCCATGCTTTTAATAACCTTTTCAGCTTTCTT 13449 37 100.0 35 ..................................... TGTATGTCAATTCGGGAGTTCCGAAACTTGAAATT 13377 37 100.0 35 ..................................... AAAGCTGTGTAATGGTGTATAGTTATGTACTATAG 13305 37 100.0 37 ..................................... TAGGAGTATGCAGCATTAGCGGGTTAAGTGTTGCGGG 13231 37 100.0 34 ..................................... CGTCAACAACGACTCTTGATACGATTATTTTTGA 13160 37 100.0 37 ..................................... TAACTCCTTATGCTCTAATAATCGCAGACGAAACAGT 13086 37 100.0 34 ..................................... TCTTGTATCCTATTTCAGTAGCAATTGCCTTATA 13015 37 100.0 35 ..................................... TTTCAACCCCTCCTTACAGACCATCGTCAGTGATT 12943 37 100.0 35 ..................................... TTTTAAAGTCATCTTCTGGAAAAACACCGACAACT 12871 37 100.0 37 ..................................... ATTCCGTACATGCATTGAGTGCGGTTGGATTATTACT 12797 37 100.0 36 ..................................... CAAACTCAGTCGTTTTAGTGTACTGAGCTTCATAGT 12724 37 100.0 34 ..................................... TAATCGTAACCCTTGCGCCCGTTCATGATCCAGA 12653 37 100.0 35 ..................................... CGTCAATTATTCCCTCCCAATCGACTACAGCAAAA 12581 37 100.0 36 ..................................... ATAAACACTGTTCCGGATCAAATCCTTTTTGATAAA 12508 37 97.3 34 .....C............................... TATCACTGGTCACACTCTTAATATTTGGTGACGT 12437 37 97.3 36 .....C............................... TTATTTTATGTTTTAAATTCCAGATAACAATTCTGA 12364 37 81.1 34 GG...A..AGT..C....................... TTGAATCGTTCGTTCGGTTTTCTGTGATTTAAAA T [12349] 12292 37 81.1 0 .G...A..AGT..C......................G | T [12276] ========== ====== ====== ====== ===================================== ========================================== ================== 73 37 99.4 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TCCGAAATTTAAAAATATGTCGCTCGACACGGAGAAATATGGAGAAGGCCTGACTGTTATCCGTTCAGCCCAGTGCCCATACTCAGTAAAAAACGTGGATGCTATTTTGAAAACTGCAAGGGACAAATTGAAAATAAAAGCTAACCTGATTGACCTTGAGAGTTCGGATGAGGCTCAGCATGTGCCCTGTGCTTTCGGAACCTTCTGTATAATTTATAATGGCAGGGTTATCAGCCATCACCCAATCAGTAATACAAGGTTTGAAAACATTATGAAAAAAATAATTCAATAGTCAATACCAGATTTCAAAACCCGTCCACAGATTTAAAAACAAAAGTTTAATAGAAAGAAAAGCATATTTTGAGATGTTTCCAAACCACTAAAAAACCCTTTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCCGAAAAAGGGGATATTTCCCGCCTTTTCTGGCCATATAACGGAAATTTTTGCCCT # Right flank : TTGTTCTTTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTAAGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAAAACCAGACTCTAGCCAAAATACAACTGAAACTATACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGGTCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACCGGTTTTGATTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAAAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGAGAGACCGGCTTGTCCAGGGAGCTGT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //