Array 1 4275423-4276121 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076466.1 Salmonella enterica subsp. enterica strain DRB_0883TJX21 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4275423 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 4275484 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 4275545 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 4275606 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 4275667 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 4275728 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 4275789 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 4275850 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 4275911 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 4275972 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 4276033 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 4276094 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4292762-4294561 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076466.1 Salmonella enterica subsp. enterica strain DRB_0883TJX21 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4292762 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 4292823 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 4292885 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 4292946 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 4293007 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 4293068 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 4293129 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 4293190 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 4293251 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 4293312 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 4293373 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 4293434 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 4293495 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 4293556 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 4293617 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 4293678 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 4293739 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 4293800 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 4293861 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 4293922 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 4293983 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 4294044 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 4294105 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 4294166 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 4294227 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 4294288 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 4294349 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 4294410 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 4294471 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 4294532 29 93.1 0 A...........T................ | A [4294558] ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //