Array 1 31807-29842 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKH01000049.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM120, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 31806 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 31745 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 31684 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 31623 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 31562 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 31501 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 31440 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 31378 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 31317 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 31256 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 31195 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 31134 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 31073 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 31012 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 30951 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 30890 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 30829 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 30768 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 30707 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 30646 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 30585 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 30523 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 30420 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 30359 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 30298 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 30237 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 30176 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 30115 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 30054 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 29993 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 29932 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 29871 29 96.6 0 A............................ | A [29844] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 915-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKH01000022.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM120, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 914 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 853 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 792 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 731 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 670 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 609 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 548 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 487 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 426 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 365 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 304 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 243 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 182 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 121 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 60 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GCGTTCATCGGCAGCGTCACACAATATGAAGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16009-15065 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKH01000104.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM120, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16008 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 15947 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 15886 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 15825 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 15764 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 15703 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 15642 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 15580 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 15519 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 15458 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 15397 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 15336 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 15275 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 15214 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 15153 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 15092 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 16 29 97.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCTGATGGCGTTTGACATGAG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //