Array 1 57673-55079 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSUK01000004.1 Ligilactobacillus salivarius strain FXJCJ7_2 Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 57672 36 100.0 30 .................................... TCCAGGTAGTGAAATACACGCTATTCACGG 57606 36 100.0 30 .................................... ATCAGGATCTCACAAATAACGACACAGTAC 57540 36 100.0 30 .................................... AGGAGTTATCGTTAAAGCTACACAAGGCAC 57474 36 100.0 30 .................................... TAACAGCTTCAAGAAACTACACGAAGTATC 57408 36 100.0 30 .................................... GAGACTTCGACGATAGTAAAACACCTGGCT 57342 36 100.0 30 .................................... GGTTTCTTAGCTAATTCAGTGAAACGAACT 57276 36 100.0 30 .................................... AATGACAACTCTAATTGTTGGGGAGGGTTA 57210 36 100.0 30 .................................... TAAGCTAACTGAATATTATGAACGAACTAT 57144 36 100.0 30 .................................... CGGTTTAACATTGCTTAACAACTTTTTAGG 57078 36 100.0 30 .................................... AAGCAGTAACAACTAGTTTACAAGTAGCAA 57012 36 100.0 30 .................................... TTACTGAAATGGTTAGTGAAGGCATTAAGT 56946 36 100.0 30 .................................... GTCATACAAGCCAATACCTTTGCTGTCTAC 56880 36 100.0 30 .................................... CTGTGCCAGCCATACTGGATACATTTGCCT 56814 36 100.0 30 .................................... TTAAAGAAAAAGTTTGATCCTAACAGTTTC 56748 36 100.0 30 .................................... GTGCGATACGTTCAGTAACATATCTGTGGT 56682 36 100.0 30 .................................... CGTTCAAAACGCAATAGATGCAGCTATTAA 56616 36 100.0 30 .................................... ATTATTTCCAGTTACTCTTTCTTTAAACAC 56550 36 100.0 30 .................................... GGCTCAAAAAGTTATCTGGGGTGCGTTCTT 56484 36 100.0 30 .................................... GTAAGTCTAATAACGAACTAAACGCAACTT 56418 36 100.0 30 .................................... TAGACTTTTGATAACCATTCTCGACCATGA 56352 36 100.0 30 .................................... AAACACTCCAAGTGTTCAAGCAGCTAGAGG 56286 36 100.0 30 .................................... TAGACTTTTGATAACCATTCTCGACCATGA 56220 36 97.2 30 ......................C............. AAACACTCCAAGTGTGCAAGCAGCTAGAGG 56154 36 97.2 30 ................C................... AGATGTTTTAACGTTTATCAACTACAACAG 56088 36 100.0 30 .................................... AGATGTCGGTGGAATATAGCCCATGAACTG 56022 36 100.0 30 .................................... CCTACTTCTTTTTTATTAATCGCATTATTG 55956 36 100.0 30 .................................... TTAACCATCGCTAACATTGGTCGAGCTACT 55890 35 97.2 30 ................-................... TTAACCATCGCTAACATTGGTCGAGCTACT 55825 36 97.2 30 ....T............................... CCTACTTCTTTTTTATTAATCGCATTATTG 55759 35 97.2 30 ................-................... TTAACCATCGCTAACATTGGTCGAGCTACT 55694 36 94.4 30 ....T..................G............ AAACTGATTTATTAACGAAGTAATGAAGAA 55628 36 97.2 30 .........A.......................... AAACTGTTTTATTAACGCATTAATGAAGAA 55562 36 100.0 30 .................................... GAACCATTTACTTCATATGTGATGTTGGCG 55496 36 100.0 30 .................................... TTGCTGTCTTACACCTATGTCAATTCAACT 55430 36 100.0 30 .................................... AAGTTCACACGAAAAGCCCTATGACAATAC 55364 36 86.1 29 ..........T.........T...A......G.C.. ATCTGCGTTCAGTTGGTGTCTCAATGCTC T [55330] 55298 36 94.4 82 ........................A..A........ ACAACTGGAGTTTGAGTACGTTTAGCTTGTGTTTCAGAAGTATGTTAAAAACCTATTATATGTTATAATATGAAAGTGTTTA 55180 36 83.3 30 .....G....T.........T.........G.T..T AGTAATTCACCGCTAGTTAAGTGGTTTTTT 55114 36 80.6 0 ..........A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ================================================================================== ================== 39 36 98.0 31 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCGAATTAGTAAAAAGTATATGAATGTATTAATTAAGAAGATTATTGAAGACATCACAGACGATGAAAGACAAGCAATACTAAAATCAGTAAATAGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCATTACAAGTAGATTATGACAATGATTTAACAAGACTATTTAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTGCATGTGGAACTAAATAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTAGGTCTTGTTAAGGCGACTAACTCATCAATGTTTATAATTGAATTCACAGAAAAGAATGGTCAGAGATTCTTTGAAAGCTGTGATAATTACTACATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAGTAACG # Right flank : TAAAATACAAAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATATTATGGTTGATAATGTAATATTATATGATATATAATATAGTTGAAGATGAGATATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGAAGGTTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGCGACTACAAAGTTAGTTTAGATTCAATTTTCGAAAAAAACTAGGGAGGGGGAATAATAATGAACT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [48-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //