Array 1 66789-67479 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROR010000011.1 Listeria booriae strain FSL L7-1826 NODE_11_length_117851_cov_24.078336, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 66789 30 100.0 36 .............................. AAAGCTACGGCATCAAAAGTAAATAAAGAGTTTAAT 66855 30 100.0 36 .............................. TAAATCAGTATTAGCAGCTCTGTTAGAATTACAAGA 66921 30 100.0 34 .............................. TAACAAGTCTAAGAGTAACGATAACTCACTTACA 66985 30 100.0 37 .............................. ACAGTTTAGACTCAGTTGCCATTGTCTGGATAACACC 67052 30 100.0 37 .............................. AGCGATTACTTTATGGGAATTGGTACTTCCGGGAAAA 67119 30 96.7 36 .............T................ TCGTTGTGCTAGCCGATGGTTCTTTTTTTGTGACTT 67185 30 96.7 36 .............T................ ACGAGCGTTAAAAACGGTTTTGTAAATTGTGCTGTA 67251 30 96.7 36 .............T................ CAACATGCCGCAGTACAAGTTGATTGGGACAACTTG 67317 30 96.7 36 .............T................ TTGTATAAGGCAAGTCCAAAAACTGAAAGGAAGTGA 67383 30 96.7 37 .............T................ GTAGTACCGTCAAGGTTTTTAACAACAATAATTTCTA 67450 30 86.7 0 ....................T...A...TC | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 97.3 36 GTTTTTATCTAAGCAATGTGAAATGTAAAT # Left flank : CGACGCTGAGCGCAACATCAGACCAGTACTGAATTCCGAGAAAATTTGGGAAGCGGACATCGTTCTAATTGCCGTCGGATTTGCAGGCACAACCAAGTCAGTATTTGAAGACTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACTTTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAAGGGGTTAGGATGGTTTTCGAGGAGGTGAAAAAATAAGTAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAGGAGTTAAGAGGGTACCT # Right flank : CCCCGAAGAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAGCCCCACTCGACACATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATTCGAAAAAACGCATTTTCTAGAACAATACTTTGATTCCGTTATCGAGATTCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCACAAAATGCCGAAATAAAAGATGAATCACTATTAAAAACAGCACACTAACCATGAAAAGACCACTCGATACCCAGTCCATAAAAAGGCATACAAATACTAAAATTACGAGAAC # Questionable array : NO Score: 2.91 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGCAATGTGAAATGTAAAT # Alternate repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 141358-140795 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROR010000006.1 Listeria booriae strain FSL L7-1826 NODE_6_length_212094_cov_27.706071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 141357 30 100.0 36 .............................. TCACATATACGGATGATAGTGGCTGGCTGGATAAAA 141291 30 100.0 38 .............................. CATTTTCTCCACGTCGTTTCTATCTGCCGTGGAGATGG 141223 30 100.0 38 .............................. TTGTGTGTATGTAAAAGATAATAATTCAGGTTCAGTTG 141155 30 100.0 37 .............................. ATGCAAGTCACTGTGTAGTAACCTTTTTTCAGCTTGA 141088 30 100.0 36 .............................. AATCGCTAGTTTCTAACCTATATGCTTCGATGGACT 141022 30 100.0 36 .............................. GCATTTTGCGGGTTATTTGTCGTTTAATGTGTCTAA 140956 30 96.7 36 ............................G. GTTGCTGGCGTCGGTTTTGGATGTTCGATGCAAAAG 140890 30 96.7 37 .................A............ ATCCATTTCATGTAATCCTTTGCTTTATCTGCCGATT 140823 29 83.3 0 ..C..............A....-.C..G.. | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 97.4 37 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GAAGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGTCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTCGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGATGGATGAAAATTCTAAAAATCTGTCGACCGCCGGTAGTGTGGAAATTAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTCAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGGGTTTGAGGTATGATGGGAGTAGGCGTTGATGAGGTACCT # Right flank : TAGATTGCTCACAAATGCAGTGTTTTTATCCATTTTTTACAGAATAAATTATCATTTAACAGCCTCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCGATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCAACTGATGTGGAGGAGCTTTATTTAGCGGAGGACGGGCTGTTGACTACGCTTCGATCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATTGCTGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGG # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 199931-199631 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROR010000001.1 Listeria booriae strain FSL L7-1826 NODE_1_length_569212_cov_27.374264, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 199930 36 100.0 30 .................................... TAGTTTTGAGTATTACGGTCGCTCTGTACG 199864 36 100.0 30 .................................... AAAACGAAATACGATACCGCGAGAATACAA 199798 36 100.0 30 .................................... CGTTCGATTCGGCGGGCGACTCAGGCATTA 199732 36 97.2 30 ..............................A..... AAAGAATATCCCTACAGCTTTATTATCAAT 199666 36 88.9 0 ...........................T.T...TA. | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 97.2 30 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Left flank : CTGTACAGATATCCCCATATCGAATATCTTCGAAAAATCATCAACACTTGGCAGTTTCTTTGTACTAATGATTTCTTCACCTTGAAGTGTTATAGGTAACGCCTTGCTACCATCTTTCTTCAATAAACGAATAACCTCATCATTTTTGAGAAATGGTTCTAGTGAGTCTTCCAAGTAAAAAGCATCAAGAACTATCTGCTCCTCCTTTACGAAGAGGTAACTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGATTGTCTCGTGAGTCGAGGAAGAAAGTAAGTTTTATCATTTTTGCACTCCTAACTGCTTTCGAAACTAAAATAGGATACATCATTGTTTTAGCAAATAAATACTGCTTCATTGACTACCGATGTGATGAGCATCACTTTGAATGCTCTATTTTCTATGGCTACTAGCCTCCGATTAATTAGAAATAACTTATCCCACTTATCCACAGTAGAG # Right flank : TTTATTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCCAATAACGCCTTCACTATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTATCATTTAATTTTTTCCCGCTTAAATGTCTCAATTTTTTTGGTTTTAGGCTTGCTATCACCAATCTGTGTTTATTGTTTTTCAAATTAGCAAACACAACACACATACCATGCTTATCTAAAAGATCGATTAATGATTTAGTAACTGCGTTCTTTAATTTGCGATCATATTTAAGCATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATTTTTTGGTGATAAATAATTTAAATGCGCTATATAGTTCCTTCCATTTTTCTCAGTAACAAATAGCCCTGCCTTGTTCATGAAAATATCCAGCTTTTCAATATAATATGGCCTGTTTTTTCTGGTAGTATTAATCCAGCTATCTACTCTTTCGGTATGTCCAGAACTCTTTAAATATTGA # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 284526-286777 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROR010000001.1 Listeria booriae strain FSL L7-1826 NODE_1_length_569212_cov_27.374264, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 284526 29 100.0 36 ............................. AATCGCTTACCTGCGATGGAAAAAGCTTGGCAGGGG 284591 29 100.0 36 ............................. AAAATATCCACTCACTAATTAATTTTTGTGGGTAAA 284656 29 100.0 37 ............................. ATTCGTAAATGTCTAAGACAGCATCGATAGCAGGTAA 284722 29 100.0 36 ............................. ATCAAACAGATAAAAATTGATTCCACTCAAAGTTTT 284787 29 100.0 37 ............................. ACAAAGAAGGAGAGCGAGTGAAAACGAATTTATTTTA 284853 29 100.0 37 ............................. ACGCGGTGATTTTATTTGTGATTTAAACAATGGAAAG 284919 29 100.0 38 ............................. ACTATAATTACCTCCTATCTTAACATTATTTTACTACA 284986 29 100.0 36 ............................. ATCTCTTGTTAAGTCCTTATGAAAGATAGCGTCTAG 285051 29 100.0 37 ............................. ATCAACTGAACGGCCGAAAAATGCCATTGTGGGGTTA 285117 29 100.0 37 ............................. ACTGGCTTAACAGCGAAAGGCCATGATATTGTAAAAA 285183 29 100.0 38 ............................. ACAGAAAACATGCGTTGTTCCCAAGATACGAATCTTAC 285250 29 100.0 37 ............................. ACTTGTTAAAGCTTGCTGGTACCAGAGGGGCTTTATT 285316 29 100.0 37 ............................. AGTAAATCCGAAACCGGAACCGGTAAACACGGCACCG 285382 29 100.0 36 ............................. ATTTTTCTATAAACACTCGTTTGCGAGTATACCCCC 285447 29 100.0 36 ............................. ATGCCGCCAAGGGCCATCATAAACTCGGCGTTATCC 285512 29 100.0 35 ............................. ACCGCAAAGTTAAATTTGCAAATGCAGAAACACGA 285576 29 100.0 37 ............................. AGAAACTGATTATGACGTTAGTTTTTACAACGGTTTT 285642 29 100.0 37 ............................. ACGCAAAGGTGATACTCTTATCTGTAAACTCAGTGAC 285708 29 100.0 38 ............................. AACAAACAAGCCTGCTCAAAAGCAATATGCGAAAGGGC 285775 29 100.0 38 ............................. AACTGTCCACATTCTCTGCAATATAACTTGGAAGCAAC 285842 29 100.0 35 ............................. ATAAGTGAATTATAGTCCTCTTGCGTCTCTGTTTG 285906 29 100.0 37 ............................. AATTGCAAGAAGCGTTTTACCGTTCTTTTTGGGGACT 285972 29 100.0 37 ............................. AGCAGATAAAATAGCTATCCAGGCATATAAAAGAAGT 286038 29 100.0 37 ............................. AAAGCCTGATTCGATAAGAGTTGGGAACCTAACAGCT 286104 29 100.0 36 ............................. TTCTCAAACAGCTAGCCAGGCACCTAGTGCAGATAC 286169 29 100.0 36 ............................. TACGTTTTTCACGCCTCGGCCTACACTCAAAAAAGC 286234 29 100.0 36 ............................. TCAGCCAATCCAGTACATTTCGCCCGATTTAACACG 286299 29 100.0 35 ............................. TTTAAAATATATCAGCAAGACACAAGCCCAACTAG 286363 29 100.0 37 ............................. TACGCGTGTTGACCGCGATACATACGAGTTCATTCGG 286429 29 100.0 37 ............................. TTCAAGCGGAAATGTTGAAGTCGTTGCGATAGGTAGT 286495 29 100.0 38 ............................. TTCACTTGATAGTTGACTGTAATAAAGAGTCTCCTTCC 286562 29 100.0 37 ............................. TGATGGACGAATGACGAGTTCCACATATTAGGGAATA 286628 27 86.2 36 ..............--.A....G...... TCCAATCCACCAATTTTCAGTTTTACGGCGTTGCTC 286691 29 82.8 29 .........C...C...A..G...A.... TTAGGAAAAGGGCGCACTTATACACCCTG Deletion [286749] 286749 29 69.0 0 C.....TC.G.....C.A.....CA...C | ========== ====== ====== ====== ============================= ====================================== ================== 35 29 98.2 36 GTTTTTATCTAAGTAATGTGAAATGTAAA # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCTTGATTTACGACATAGCAATGGACAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATAACACCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTAGATAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTATTAAGCGTTGGTGTGATTGGGTTTAAGGCTGTTTTTGAAGTTCGGCTTGTAAGGTTTGAGAGCGAAAATTTAGGATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CTCGGTCTGTTTAGCTACGACTGCTTTGGCAGGCAATCTCTCAGTCTACCAAGCAATGTTCGTAGCCAATAGACTCTACTTTCCAGCCCTCACAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTCCCCATTTGGGTTATGAAGTAAAGCATAGTCATGACGTTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTGTACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //