Array 1 9636-8564 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBOX01000149.1 Streptomyces hygroscopicus subsp. hygroscopicus strain NBRC 13472, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 9635 33 90.9 28 .............................ATC. GCGAGGACGGGTATGCGGCGTTGCCCGG 9574 33 90.9 28 ............................CA..A TCGTCCCGGCCGTGAACAGGTGGGCTAG 9513 33 93.9 28 .............................C..G GGTCCGTCGCCCTCAGCGTGGGACGCTG 9452 33 90.9 28 .............................AT.G CCACGGTTCCTGCTCTGCCCTGAACCGG 9391 33 97.0 28 ...............................C. GCTTGGCTTTGGTGGAGGCGTGGTTGGA 9330 33 93.9 28 .............................GG.. TGGTCAAGGGGGTGCCGCCGTGCAATCC 9269 33 93.9 28 ..............................TC. CTGACTTCGACCTGGCCGGGTGGCGGCG 9208 33 90.9 28 .............................GT.A CGGTCTCGCCGGGCTCGGCGTCGTCGGC 9147 33 93.9 27 .............................C..C CTGCGCCATCGCCTTGCTGGATCATCC A [9117] 9086 33 87.9 28 ...A.....................G...G..A TCAGGTTCCGCACCGTCACCACCAACCC 9025 33 90.9 28 .............................GA.C TGATGGAGGACCTGAACCGCTTTCTCGG GC [9006] 8962 33 100.0 28 ................................. TCTCGCTGAACACCGTCCCGCACGAGGC 8901 33 87.9 28 .................A...........A.CG GATGGGCGAAGCGGCAGACCCCGACTCC 8840 33 90.9 28 ..................A...........G.G ACGACCGCGACGACACCAGTCGCCTGCG 8779 33 84.8 28 .....T.......................GACA GATCAACGGTCTGATGGACGCCTCTCGG 8718 33 84.8 28 .............T...............GTAC CGGGGACGGTGAAGCACATTCCGTCGTG 8657 32 75.8 28 .....TG.-...............GC...G.CA GGTAGTTGGTGGTGGTCGCCTTGGTGGA 8597 33 69.7 0 ..AT.....A....G.T.A....TC....C.C. | A [8577] ========== ====== ====== ====== ================================= ============================ ================== 18 33 89.4 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGTCGT # Left flank : CGTGCAGAACCTGCTGACCCCCGGCACCAACGCCGTCAACGCCGAGGCGTGGGAGGGCGACGAGGAGGAACGGTCCGAACGACGCGACACCCAGATGGTCCACCTCTGGGACCCCAAAGCCGGCGTCCTGCCCGCAGGCGTCAACTACGCAGCCGGAGGCGCCTGATGGCTTCCATGCTGGTGATCGCCACCACCGCCGTCCCCGACCACCTCCGAGGCGCCCTCAGCCGCTGGACCAGCGAGGTCGTCCCCGGCATCTTCGTCGGCAGCGTCTCCGCCCGCGTCCGCGACGAACTCTGGCAAGCCGTCACCCAAACCGTCGGCAACGGCGCAGCCGTCCTCGTCCACCCGGCCCCCACCGAACAGGGCTACACCATCCGGACCGCAGGCACCCGCCGCCGCGTCCCCGAGGACTTCGACGGGCTCACCCTGATCCGCATGACCGCACCACCAAAAGTCAAAGAAATGCAAAGCCCCTCTTAAAGTGCAGGTCAGGAAGA # Right flank : TCGCAACTCCCGTCACAGTTGAAGGCCGTCCGGGTCCGAGGCGACGGCCCATCAGGTCGCAGACGTCGCACACAGCAGCCTGAAACCGATGGTGGACGATCACCCCCATGCCGGACGACACTTCAAGCCCTGCACGCCGACAAGGCGCGTAACCGACCCGACCTGCGAAAAGGGTCACAGCGAACGCATCGGAGCGCGAATCGCCCGCAAGGACATGCGCAAGCCGCAGCGCCCGGCCGAGCGAATGCACGACCGGGCGCTGCGGTGCCGCGAGAGGACTGCAGACGGCCGCGTCCTTACAGCAACGTGCCCTGCTCATAGTGGTCTGCCAGCCGGCCCAGCTCGCGGACTTCGTCGCCCGTGACGTCCTTCCACCACTTAGCGAAGATACGGCGGTGACACCACTGCGCCGGGTCCGTCAGGTCCTCAAAGCAGAGCAGGACCAGCCTGTGTTCCTTCTCCGTCTCGGCTATCTCCTGCAGCCGCGCCGCGATCCATGT # Questionable array : NO Score: 3.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.47, 5:-1.5, 6:0.25, 7:0.00, 8:1, 9:0.12, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGTCGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19233-23237 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBOX01000149.1 Streptomyces hygroscopicus subsp. hygroscopicus strain NBRC 13472, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 19233 33 87.9 28 ............................TCTG. AGCGCGCCGTGCGGCTTGATGCGGAATC 19294 33 97.0 28 ................................A TGGATGTACTGCGAAACGACGGGGCAGT 19355 33 93.9 28 .............................AT.. CAATCGTGGGTTATTTGTTGTGCGTTTC 19416 33 97.0 26 ...............................T. GGGCGGGCGTGCTTGAGGGCCTGGCC CT [19445] 19477 33 87.9 28 .............................AATC ATGACCGGTCCCCCTTGTGAGGCGTGTA 19538 33 90.9 28 .............................C.GA CGAGCAGCAGCACGGTCACCACCCCGAG 19599 33 90.9 29 ..............................ATC AGCCGGAGCTCCGGTGCGGCGCCGGGGGG 19661 33 93.9 27 ............................AC... TCCAGCACCCCAGGGCCCGCAGTTCCC A [19692] 19722 33 90.9 28 .............................C.GA TCCACGGGGGTTTGCTGGTGCCGTCGGC 19783 33 93.9 28 .............................T.G. AGATCACTCCCGAGGTCATGTCCATCAC 19844 33 97.0 28 ................................A GCAGCAGCGATGCCTTGCTGTCGGTGCG 19905 33 93.9 28 ..............................G.A CTATGGCGGAGAGTAGATGTCGCCATAG 19966 33 93.9 28 .............................A..A CGGTGAGGCTCACGTGGGGGGCTGTTGC 20027 33 93.9 28 .............................C..T TCCCGTCCGGCGCCCCGCTCCGGTACGG 20088 33 93.9 28 ..............................TG. ACGGTTTCGCTGCGATGCAGTTGGCGGA 20149 33 90.9 28 .............................TT.C GGACCCAGCCGTCCCGCTGCAGGAGGTC 20210 33 90.9 28 .............................CAG. GCGTCCAGGCAGTAGGGGCCCCAGCCGA 20271 33 93.9 28 .............................CT.. GCGCCGGTGGCCTTCACGAGGGCCATGA 20332 33 93.9 28 ...............................GT GCGGCGTCATCCGCAACATCAAGGTCAG 20393 33 100.0 28 ................................. TGCTCGCCGAGCGCCAGGTCCTCATCCT 20454 33 90.9 28 .............................CG.T GGCACCCGGGCACGCCGTACCTGCCGGG 20515 33 90.9 28 .............................CTG. TGCGCTATCGCCTCGTCGCGGGTGGCGT 20576 33 90.9 28 ............................AA.G. GGGCGGCCCCGGGCGGGGTGCTGCGAAC 20637 33 97.0 26 ..T.............................. ACCTCTGATCACCGCACGACCGAGGG CA [20666] 20698 33 90.9 28 ..............................ATC ACACCTACGCCGTCTCCAGCCGCGACGA 20759 33 100.0 22 ................................. TGCGGAGATCGTCACCCGCTCG CGGTAC [20788] Deletion [20814] 20820 33 90.9 28 .............................A.GT TGACCAGGGTACGGGCGGTGCTTTTCAC 20881 33 100.0 28 ................................. GGTCCCACCCGGTCCAGCTTCACCTGAC 20942 33 90.9 28 .............................CGG. TGTTCCCGTCGGTGTTCGCCTCGTTCGC 21003 33 90.9 28 .............................TA.C TGCGTGCGTACAGGGCCGTCAACGCACA 21064 33 93.9 28 .............................C.G. GCACGAGTTCCGCGTGATCAAGCGGCCC 21125 33 90.9 28 .............................AT.T TCACGATGGGCGGACACACATGGTCGGT 21186 33 90.9 28 .............................CG.T GGCACCCGGGCACGCCGTACCTGCCGGG 21247 33 93.9 28 ..............................T.C ACAACCAGGGCCGGGCGGTCGACGTGAT 21308 33 97.0 28 ..............................A.. GCACGGTCTACATGGTCGGCTGGGGCCG 21369 33 90.9 28 .............................CG.A GCGCGGCGACCAACGTCCTCGGGGATGT 21430 33 100.0 28 ................................. ATTCGGACGGCTGCAACGCGTTCCCCTC 21491 33 93.9 28 ..............................TG. CCAGTGCATCGCGCACCCACTGCACGGC 21552 33 90.9 28 .............................A.AA CCCCGAGCACCCACAGCACGGGAGCCCC 21613 33 90.9 28 ..............................TGC GGTTGCCGGAGGACATCTACGAGTGGTA 21674 33 93.9 28 ..............................T.A ACCGTTCACCCGGACTTCGGGAGCTTGA 21735 33 93.9 28 ..............................TG. CCAGTGCATCGCGCACCCACTGCACGGC 21796 33 93.9 27 .............................AG.. CAGCCGGACGCCGAGGATCTGCGCTGG T [21825] 21857 33 93.9 27 .............................AG.. CAGCCGGACGCCGAGGATCTGCGCTGG T [21886] 21918 33 90.9 28 .............................TA.C AAGGTATCTCCCAGCGGCGTGACACCTC 21979 33 93.9 27 ..............................GT. CATTTCCCCGTGGACACCCCGGCGATC A [22008] 22040 33 97.0 28 ..............T.................. GACGTGGTCCCACCGCGCCCGGATCGTC 22101 33 97.0 28 ..............T.................. GACGTGGTCCCACCGCGCCCGGATCGTC 22162 33 97.0 28 ..............T.................. GACGTGGTCCCACCGCGCCCGGATCGTC 22223 33 93.9 28 .............................A..T CAAGAAGGTGCTGTCCTTCCACCAGCGG 22284 33 90.9 28 .............................C.GC CGGTGTGTTCATCCACGTCCAGGAGGAC 22345 33 93.9 28 .............................C..T TCGTCCAACAGGCCCGCCGGGCGGGCGT 22406 32 93.9 29 .............................-.A. CACCTGACCAGGGGTGGTCAGGGATGAGC 22467 33 90.9 28 .............................A.GA GGCAGGAACGGGACCGCCAGGACGAACA 22528 33 93.9 28 ...............................GA GTACGACGAGGATGGATCCGCCGGTGGT 22589 33 93.9 28 ...........................T.A... CCGGCGCCTGTGCCTGCCCCCGGCCCTG 22650 33 90.9 28 ..............T................GT CGTCAACGTCCTCGCCGTGGGCTGCCCC 22711 33 90.9 28 .............................T.GA CCCCGGCCCGGTCGCTGAGCACCTTGCC 22772 33 93.9 28 .............................A..T CGCCACCGTGGCGCACAGAGCCGGGACG 22833 33 97.0 28 ...............................G. TGGTCATTTCGGCGTCCAGGCGGGCGTC 22894 33 90.9 34 ............................C.A.C GCGAGGAGATGGCAATGGCCCGGTACGAGCGGGA 22961 33 93.9 28 .............................C..A TCGCCCACGGAAGCTACAAGGGCGCCGA 23022 33 93.9 28 .............................A.G. ATCAGAAAGCTGTCCAAGAGCCGCGCAC 23083 33 87.9 28 ......T......................C.AA CCCAGGGAGGAGCGGCGTTCACCTACCT 23144 33 90.9 28 ..............T................GT CGTCAACGTCCTCGCCGTGGGCTGCCCC 23205 33 84.8 0 ....................AA........AGT | ========== ====== ====== ====== ================================= ================================== ================== 66 33 93.2 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGGCCG # Left flank : GCTTGCCGATGTCGTGCAGCCCGGCACACAGCCCGACCAGAGCCCGGGCACGCTCCAGCTCGCCCCCCAGCCCCATCCCCTCGGCAATCCGGACCCGCTGGTTCTCCGACAGATAGACGTCCCACAGATGCAACGCCATCGCCGCCGCATCAAGGAGATGCCTCACCAGCGGATACGGAGGCCGCTCCGGATCCAGGCCCCGCGACTTCCCCCACGCAGACTCATCCAGCGCATCTTGCCTGCGCATCATGGCGTTTCCTCCCACTTCGACACTGGCTCGCGTCCCGCCACACGGCGGGAGGTGGCTCCGCCGACTGATCCAAGCACCCACCACTGACACCTTGGCCCGACTGCTGTCATCCGACGGCCTTGCCACCGAGTGCCGCTTTTCCCGGGCGTGCCTTGGATAAAGTGGGCATCGTGCAGCCCCTGGAGCGTTTCACCTCATCCGACGTGGCAAAGAACAAGCAAAGTCGTTTCTAAGTCGCAGGTCAGAAAGG # Right flank : TTTGACGACGTCGCGCCTGATGTCCCCGAGTGCCCCGCCGCAGAGGGTGCAGGGTGACCCGCGCACGCTGACCCTGCTGGACCTGAACGCGCGGTTCCTGCCGCACGGGCAGTTCCGGCAGCTGGTGGCCAACATCCAGCGGGATGGGCGTCTCACCTCGACTCCCGCTGGTGTGCCACCGAGAGCGGGCGCCTGATCGTGCTGTCCGGCAACCACCGGACGTTGGCGGCGATCGAGGCCCGGACTGGAGCAGATCTGGTGGATGCAGATCGACCAGCCGTTGCCCCGCCAGCGGCAGATCGCGCTCCAGCTCTCCCACAACGCCACCGCGGGGCAGGACGACCCGGCCATCCTCAAGGAGCTCTACGAAAAGCTGGAGTCGGTGGAGTGGCGGCAGTGCACGGGCCTGGACGACAAGACGCTGGGCGCCCGCTGGAGAGGTCGACGTGGCCAGCTCGGGGAGGCGAACCTCGACTTCGCCTCCGTACAGCTGATGTTCC # Questionable array : NO Score: 4.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.08, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 33062-32850 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBOX01000030.1 Streptomyces hygroscopicus subsp. hygroscopicus strain NBRC 13472, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 33061 29 96.6 32 ............................G TCCTGGTCCACCCGCGCCCTGCTGGCCGAGGC 33000 29 100.0 32 ............................. TCGATACCGGTCGGGAGGGATTCGTATTCCTG 32939 29 100.0 32 ............................. TGACGGACAATCAGGGAAACCGGGCCCCGCAC 32878 29 93.1 0 ...........................GT | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTCGGCCCCGCGCCAGCGGGGGTGGTTCC # Left flank : GGTGGCCTGGGAGACCCCGGCGAGCTGCGCCACCTCGGCCTGCCGGGGCCGGGAGGTGCGGCCCGCGGAGCCGGTGTTACGGCCTCGCTTCGCCCGCTTCCGCGACTGCTCCACGCTTGCGTCCTTCTCATCGAGGGTGCTGGTTATGCGCATTACTTATGCGCATAACCAGCACCCTGCAGGCAGCGGACGGAGCGGGTCAAGCCCTGTGCGTCAGGTCTTCGCACCGGATCGGGGGTCCACACCTGTCCCGGTCCCGGATGAGGTATTCGGCAGGGACAGAGCCATCGATTGCCGGCATGGGAGCGACCTGGTCACCCCGCTGCTCCGGCCTCCCACGCAATGCACTTCGCGCTAGACCTCACCTCTGAGATCATCTCCAACATGACCACGAGACCTGTCCTCACGACCGCGCTAGACGGCCCGCTGGCGCTGCTCACGCCAACCTCCAACTGAAGGAAAACGGCGTTGACCGGGAGTAGAGTCCCAGGTCAGCAAGT # Right flank : GAGCCCGTAACGCCAGAGGCTGGGCGGAGTTCGCCCGCCGCGTCCAGCGTTCCAGCACAGCACGCTCATCAGAGTGCGGTATGTCGGCTTTTGGGGCCAGTGCTGCTCGGTGAGGAAGGCGTGGGCGGCGGTGACGAGGGTGGCGTGGTGGTACCAACCGTTCCAGGAGCGGCCTTCGAAGTGGGTCCGCCCGGGGCAGGTACAGCTGCCAGTTCAGCGGGCACGAGGCCGTGTCGAACACCGCGTGCACGCTGACGGCCCCTGGCAGTTGGCCTGCTTGCCCAGCGCACCGCAGTACTGGTGGGCGACGCCGACCGACATCCTGCCGTCCTTGGGGAATGACACATCATCGACCGCCCAGGCGTCCGGGGCGATCTGCGGCACCATCCGCTCCGCGATCCGCCGGCGCACCGGCACCGGATCCCACGTGGACTGGTTCACGAACTGCTGCAGGTTCTGCTCATTGCCGTCCGGCAGCCGCGAAGCCATGGCCTGGATGG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCAGCGGGGGTGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //