Array 1 17994-18458 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012590.1 Actinomyces sp. oral taxon 414 strain F0588 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 17994 37 100.0 32 ..................................... TCGTCTACCAGGCCTGTCAGGCTGCGGGGTTC 18063 37 100.0 37 ..................................... TCGACGCCGCGGCCGAGGCCCTTTGGGTCTCGGATGT 18137 37 100.0 34 ..................................... GCGGATGCGCCGCCTTGAGGCTGATTTGTCCGTC 18208 37 100.0 36 ..................................... GGGCACCTACTACAATCCTGGGGCCGACGTCCTCAA 18281 37 100.0 36 ..................................... ACGGATCCTTTATCGTCCTAGTGACGGCGGAATCGG 18354 37 100.0 31 ..................................... ACCCTTTAGGAGGAGTCATGAAGCGTTTCAT 18422 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 100.0 34 GTCTCAATGCACCTACAGGTGCGTGGTGCTCCCTGAC # Left flank : GCACCGGCCCCGCCTCCCGCGGCGGCCAGATGGTCGAGCCGGCCTTCGGCACGGGCCTGGCGGGTCCGCCAATCCCCGGGAGCTCTTCACCCCCGGGCGCCGCGATCTGGAAGCTCGGACCGCGCCTCGGCCTGGGCCGCGGATCGTCCTCCTGCCTCCATAACGATCCGTATACCTTATATATAGGACTGTGTGAACAGAGGGGTTCACTGGTGCGCACCAGCCCCGTCGTCGCCGACGGCCCTGAGAGGACGGCCGCCTGACCGGCCCCGCGCCAACCGCCTCCGCCACCCGGAGGAACTGTCCCGCCAGAGCCCGCTCCATCACCCACGCCCACGATCGCCTCCGCCACCCGGAGGGACCGTGCCCCTCGGCCCCGGCTTCACCGTTGAGAACCGGGCCCGCGTGGCCCTGTACGACCTACCCGCTCGTACGCCACCCGGCGCGAGCCCGCCGCCGAGCTCGACGGCGTTCGCCCCGACCCGACCGGACGGGGAGAA # Right flank : CCCCTGCCTCCGAGAGTGGCGGTATGACGCCACTTCGAGGGCCCGGAGCGCCACCGGCCCTGGGAGCACCCCTGCGGACCGGCCAGCACCGGGCTCAGACTAGCACATAGTGGCGGAATCACGCCAAGCGCCACCGACGGCCCTCAGAGCCCTCCGCGCGCCAACTTTCAACCAGGTCATGCGGAAAGGTCGGTGTCGGAGCACCATCTTGCAAACATGTAACATGACACCCTGTTCACTATACCGCCTCACCAGCCACAACAGCACCTCCAGCACCAACCGGGCCGAACCCACCGGGGACGTCCCCCCCGCACCCGGTCGGCCCGACGTGGGTGATGCTGAGATCGGCGGTATGCGCGATGGCGTCGAATAGCCTCCTCCGTCGGGCGCCCGCCGCCCCCGCCCACAGCTCCTCCTGGGCGACGCCCCGGGGAGCGGTATTGACACTGTGTTTGTGGCGGACGTCGTCGTGGACGAAGCCGATGTGGTACTTCGTCGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAATGCACCTACAGGTGCGTGGTGCTCCCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [20.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 410012-410337 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012590.1 Actinomyces sp. oral taxon 414 strain F0588 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 410012 37 100.0 35 ..................................... GCCAGTGAGATCATGTATCTGCCAGCAATCATGCT 410084 37 100.0 33 ..................................... AAATATCCGGAGCTCTTGATGCCGGAGCCATCA 410154 37 100.0 37 ..................................... CCGCGCGAGCGCGGCCGACGACGCCAAGAAGGCGGAG 410228 37 100.0 36 ..................................... GATCTCCTCGGACGGAGCTGTGGAGCTGCCCCAGCA 410301 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 100.0 36 GTCTCAATGCACCTACAGGTGCGTGGTGCTCCCTGAC # Left flank : GGGAGTGCCCGTGGCGGGGTCGCTGCGCCTGGGTGGCGGCGGGCCGCCCCCCGGATGAGCACGCCGCCCGACGCCGTCGGCAGGCCTGGCGCGGCACCGACCGGCAGGCGCGGGGGCTCGTCATGGCGCGGTTGCGCGGGGTCGGGCCCGGGGAGCGCGTGAGCTGGGAGGAGCTGCGCGCGGCCGTGACCGGCGGGGCCGGCGGGCGGGCGGATCCGCGCCGACCGGAGCGGATCCTGGCCGGTCTGCTCGCCGACGGACTGGTGGCGACCGACGACGACGGCGCCACCTACCGCCTGCCCTGAACCGGCGGGCGGGAGGCGCCGGCGGTCGGCATCACCGAGGCCTGCCCGACTCGACCGGCGGCGGGGCGGTGCCGCCGGTTCCGGTGCGTCCGGGAAACCCGTTCCGCGTCCGGCTCGGTGCTCCGGGTGAGTGCCCCGACCCCCTGGGTGCTCCCTAACGATGCCCGTCGCGGCCGGAGACGGCATGGGCATCTT # Right flank : CCCCTGCCTCCGAGAGCGGCGGTATGACGCCACTTCGAGGGCCCGGAGCGCCACCGGCCCCGGGAGCACCCCTCCGGACCGGCCAGCACCGGGCTCAGACTAGCACATAGTGGCGCAATCACGCCAAGCGCCACCGACGGCCCTCAGAGCCCTCCGCGCGCCAACTTCTGACGAGGTTATGCGGAAAAGTCGGTGTCGGAGCACCATCTTGCAAACATGTAACATGACACCCTGTTCACTATACTGCCCCACCAGCCACAACAGCACCTCCAGCACCAACCGGGCCGAACCCACCGAGACCGCCCCGCACCTCGACCGGACACGACGTGCACTCTCGCCCGACCGGGACAAGCACGGGCTCCCAACCGGCCCGGCGGACCGGAATGAGCCCTCACATCGAATATTCTGCGCGCCGAGAAGATTGTTCTCAAAACGTCTGGACTCATTCGCGAGTAACCACCCTCCTCGCGGCGACCAAAAACCTGCGTCAGAGACCGTCT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAATGCACCTACAGGTGCGTGGTGCTCCCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 3 670723-667519 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012590.1 Actinomyces sp. oral taxon 414 strain F0588 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 670722 28 72.4 32 C....GA.-..A.CC.............T GTGACCGCCGTGCCGGGCGTCCAAGTCGCGTA G [670719] 670661 29 96.6 33 ............................A ATGCGCCGTGATGACTTTGGTCTTGAAATCATT 670599 29 100.0 32 ............................. TCGTAGGCGGGCATGGTCACGCACCGATCCCG 670538 29 100.0 34 ............................. ATCACCATCCGATAACCAGCAGAGGAGACACCAA 670475 29 96.6 33 ............................G CGCCGTGACCGACATCGCCGACCGCCTCGCCGC 670413 29 96.6 32 ............................G GCCGGGGAGGGCTCCCAGTCGTCGGGGAGCCG 670352 29 96.6 32 ............................T GCTCTTCCCCCACTGCGCCACAGCGGGACACT 670291 29 100.0 32 ............................. GCCGCGCACGCGGCACTGCGCAACGAGATCGC 670230 29 96.6 32 ............................T CACCTTGACGTTACCCCGCTCGTTGACCATGG 670169 29 100.0 32 ............................. GGTCCCGTTCACGCGCAGGCGGTCCGCGGCGG 670108 29 100.0 32 ............................. CTCGGGCGGGCGGGGAGGGTCCGGCAGAAGGG 670047 29 100.0 32 ............................. GACCCGGCCGTCGGCCAGGTGGAGGTTGACCG 669986 29 100.0 32 ............................. GATCAGGCCCGAGCATGACCGCACCGCACCCG 669925 29 96.6 32 ............................T TCCGCCCGGGAAAGGGGTCCTCCCCGGTAGGC 669864 29 96.6 32 ............................T CCGGCGCGCACGGCCGGATTCTGGCCAGCGGG 669803 29 100.0 32 ............................. CGCATCACGCAGATCATCTAGTTCACTCATAA 669742 29 96.6 32 ............................T ATGCGCGTCATACTCGGTGAGGTTGGCGGCGA 669681 29 96.6 32 ............................G CGATCCACACCGGCACCACCGGCATCGGCACC 669620 29 96.6 32 ............................T ATGCGCGTCATACTCGGTGAGGTTGGCGGCGA 669559 29 100.0 32 ............................. GTCGACGTCGGCGTCGGCGGCCCGGCGCACGG 669498 29 100.0 32 ............................. GTTCCGCGGATTCCTCGATTGGATCGCCCCGT 669437 29 96.6 32 ............................G AAACCGGAAGCCCACCAGGGCTGACAAACCCG 669376 29 100.0 32 ............................. GCGGCAGCCGACCAGGAGTTCGGCGGCGGCGT 669315 29 100.0 32 ............................. ACGATTCTCGCCGCCATTCTCGGAGTCGCCGC 669254 29 96.6 32 ............................T CTCATGCGTCCGTGACGGAATTGCGTGCGGAG 669193 29 96.6 32 ............................G GTGATCGCTTCTAGGCCCCTTACAGCGCGTCT 669132 29 100.0 32 ............................. GATGGTGCCGCAATCGGCGTTGGCGTCCGCGG 669071 29 96.6 32 ............................G CGCGCCGACCGGGCGCGCATCACCGCCCTCAT 669010 29 100.0 32 ............................. CAGTGGGCGATGCGATGGGTCACGCCTCAGCC 668949 29 96.6 32 ............................T AGTGCGCAGCGCCGCCTGCCGAACGGCGGCGC 668888 29 100.0 32 ............................. TTGCTCATTGTGGTCTTCCTTCCTTTTTGCTC 668827 29 96.6 32 ............................G CAGTCTGGATCGCTCGCCGTCGGCTCCGGCCA 668766 29 100.0 32 ............................. GTGGTGCTCCTCCTGCACGTGCCCCTCGAGGG 668705 29 96.6 32 ............................A TCACCCTCCTTGATTTGGGATACGGCGTTGAA 668644 29 96.6 32 ............................G TCAACGCTCGCCAGGACGGTCTCACCGTCCCG 668583 29 100.0 32 ............................. ATAGTCACCATCCATGGTCTTGACGTTCAGGG 668522 29 100.0 32 ............................. GCCTCCACCGTCACCGGCAGGTCCCGGTCCAG 668461 29 96.6 32 ............................G TTGCGCGTCACGCAGTACGCTTCCGTGGCCAG 668400 29 96.6 32 ............................T TCGTTCAGGAACGGGCGGACCCAGTACCGCAG 668339 29 96.6 32 ............................G TCCGTCAGCGACGGCGGCGTAGGTGCCGCTGG 668278 29 96.6 32 ............................G CAGCGTCGCAAGCGCCTGCTTCTTACGACCCC 668217 29 100.0 32 ............................. GCCCCCGTCACCATCCAGGTGACCGGGGCCGC 668156 29 100.0 32 ............................. GGGCACCAGTGGTCGTCCCGTCGCCATCCCAT 668095 29 96.6 32 ............................A GCGCCGCGACCGATACCACCTACTTTGACGGG 668034 29 96.6 32 ............................G CACAAGGTGCTCAAGCATGTCAGCGGCCGGGT 667973 29 100.0 32 ............................. CCGGACGGCGCTCTTGTCGCCACGTTCCGGAT 667912 29 100.0 32 ............................. TGGGCACCATCACCGGGGAGTCTGGCATCTTG 667851 29 100.0 32 ............................. GAGTCGGCGCTGGAAGTCGCGCTCGAGAGGCG 667790 29 100.0 32 ............................. CCGAACGGGTTCGTGGGATCGCTCTTGTCGAT 667729 29 100.0 32 ............................. GACCGGCGACTCGTCCCAGTTCTTGTTGTCCG 667668 29 96.6 32 ............................T CACGCGGGCTCCCCTCCGCCCCCGAATAGGGG 667607 29 96.6 32 .......................A..... GACGACGCCGTCCACCTGGACGGCCCCGACAT 667546 28 86.2 0 ......................C.C-..A | ========== ====== ====== ====== ============================= ================================== ================== 53 29 97.6 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : GACTCGTTGCCCAGGGCCTTGACGAGGTCGTCGACCTTGCGCGTGGACACGCCCTCGATCCACGCCTGGCAGATCACCGCGTACAGGGCCTTGTCCACCCGCCGGCGGGGGTGGAGCAGGGACGGGAAGAACGACCCGGTCCGAAGCTTGGGGATGGCGAGCTCGACCTCCCCGGCGGTGGTGGCCACCGTCTTGAGGCGCTTGCCGTTGCGCCTGTTGGTGCGCTCCGGCGTGCGCTCGTAGCGCTGCGCGCCGATCACGGCGGCGGCCTCGGCGTCGACCAGGTCCTGCAACCCGGCCTGGAGCAGGCGCCGGAAGACCTCGTCGTGAGCAAGATCGGGGTCGGCCAGGACTTCCCGGATCAGCGTGGACACGGCAGACTGGTGACTGGGCATCGTGGGTGCACTCCTTGTGAATCTGGCTGAGGAACAGGGCTCCCACGATGCCCGCCGCCCGTGCCGACGACCCCGGGCGGAAGCCCCGCGGGAATTGCCACCACA # Right flank : CATATTTGAGAAGAGGAGATTTTATGCCTCGAATCGACAAGGACTCCCGGTCGCCGGCCGAGTTCCGGACCATGCGAGAGATTCTCGGGATCTCCGGACCCGTCCTCGCCGGCGCGCTTGACGTCAACCCCCGCTCGCAGCGGGCATGGAATTATAAGGCCATGGCCCCGGACATCGCCTGGGCCGTCATCGATCAGCGGATCGAGTGGATCGAGGAAACGGCCGATGCCATTTTGAAGGAATCGGAAGACGCCTCGAATAACAGGGAGATCGTTCTTGTCGTCTACCCGAATGACGAGGCGGCCCGCCGAGCGGGGTGCTCGGTGCCCGCCTCCTGGCACCGGGCCGCAATGGGGCACGTCGCCATGATTCTCCGGATGAGGGGACACGTCTGTCGGATCGACTATCCGCCCGAGGAGTGACACGGCTCGTCCCGCTCCTCGCCCGTCACGCGACCGCCCACCTGCAACTTCGCCGCAACCGGCCGCCGCTATCCTCCT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.67, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 673024-672134 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012590.1 Actinomyces sp. oral taxon 414 strain F0588 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 673023 28 100.0 33 ....................-........ CCGTAATCCATATTGCCGATATGTTCCTTCCGG 672962 28 100.0 33 ....................-........ TACGTCATGGCCGTGATCTCAATATTACGGCCG 672901 28 100.0 33 ....................-........ TCATTCCGCTATGAGGCGGTGAAGTATTTGGAA 672840 28 100.0 33 ....................-........ TGACCTCCCAGATGCGGCCGGGGTCGTCGGGGA 672779 28 100.0 40 ....................-........ CGGTGGAGGAGTGGACCTTGAATCCGTCGCCGGCGCGGGC 672711 29 79.3 32 ..............A...G.G..GAT... ACACTGGGCGGACGTTGCGCACGCCCGCACGA 672650 29 75.9 32 ..............A...G.G..GAT..T GGTCCCGTCGGCCTCGACGATTCGCGCGCCAT 672589 29 75.9 32 ..............A...G.G..GAT..T GCTTTCAATCCCCCTCGTCTTCGATTGGCCCG 672528 29 75.9 32 ..............A...G.G..GAT..C GCAGACGGCCAGCGAGGCCATGAGCCGCGAGC 672467 29 75.9 32 ..............A...G.G..GAT..T GAGCGGGGACGACGACCTGGTGCGCCACGGAG 672406 29 79.3 32 ..............A...G.G..GAT... TTCCCGACGCCGGTGCGGGGCGCCCACCCAGG 672345 29 75.9 32 ..............A...G.G..GAT..C GCCGCCAGAAGGACGCGCCAGACACGGGGTCC 672284 29 75.9 32 ..............A...G.G..GAT..T TCCTCGGCCGCCATGTCCGTCCAAGCGGCCTC 672223 29 79.3 32 ..............A...G.G..GAT... CGGGCGGCTTTGGTGCGTGAGAATATTCGGGA 672162 29 65.5 0 ..............A..C..GG.CAAGTC | ========== ====== ====== ====== ============================= ======================================== ================== 15 29 83.9 33 GTAAACCCCGCGCGGGCGCG-ATTCCCCG # Left flank : CCAGCGGCGCGCGGTCGCCGGCGGGGTGAACTACGCCGAGGAGGCGGACGAATGGTAGTGCTCATCCTTTCGGCGGCCCCGGCCTCGCTGCGCGGCTCCATGACGCGGTGGCTGCTCGAGGTCTCTCCCGGGGTCTTCGTCGGCCACCTGTCCGCCCGCGTGCGCGAGCAGCTGTGGGAGCTGGTCCGCGAGAACCTCGGGGAGGGGCGGGCGCTGCTGATCTGGTCGGTGCGCTCCGAGCAGCGGTTCACCATCGCGTCCCTGGGGCACGAGCGCGAACCGGTGGACGTCGAGGGCTGCCTGGTGATGAGGACGCCGTACCAGCCGATCAAGGGATCTCAGGCGATCCCCGGCGCCGTCAAGCCCCCGAAGGAGTCGTGGTCCATCGCGGCACGACGACGGCGCTACCGCAACTCGGCGGAGCGGGCCCTGGGTCGGCAGTGAAGGCAGCAGGGGTCTGGTAGAGTACGGGTTCGTTGGGATTCCAAGGATCCGCAAGT # Right flank : TCTTGGTGTGGTGTTCTTTCGGTCAGGTGGTGATGGGGGGCAGGGCGGGGCGGCCGCCGGCGCCGTCGGTGCTGTTGTCGGTGTGGAGCATGTCGGTCAGGTGTCGCAGTGAGGTCTGGGAGAGGTAGCGGCGTTCGCCGTACTGCCACTCCTCGTGCTGCTCCAACAGGACGGATCCGATCAGGCGGGTGACGGACTCGCTGTTGGGGAAGACCTGGACCACATCGGCGCGGCGCTTGATCTCCCGGTTGAGCCGCTCGATGGGGTTGTTGGACCAGATCTTGGTCCAGTGCTCCCGGGGGAAGGCCGCGAAGGCCGTCAGGTCCGGCTCGGCGTCGATCAGCATCCGGGCGATCTCGGGGAACGGGTCCCTCAAGGCGTCGATGACGTGCTTGTACTGGGCCGCCACGGCCTCCTGACTGGTCTGGGCGAAGATCGTGGAGACCAGGGCGTTGACCGGCTTGGATCGGGCCGAACCGAGCCGGGAGGTGATGTTGCGG # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.20, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGGGCGCG-ATTCCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 691627-690924 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012590.1 Actinomyces sp. oral taxon 414 strain F0588 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 691626 29 96.6 33 ............................A CCAGGTCCGCGAAGCTCTGACGGCGGCCATTGA 691564 29 100.0 32 ............................. CGTACCGGTTCCTTCCTGGGCGTGTACACCCG 691503 29 100.0 32 ............................. AAGTCGCACCTGGTCTTCCCCAACCTCACCGA 691442 29 96.6 33 ............................A TGGCACGGTGCTGCTGGACCGTACGTCCAAGCC 691380 29 96.6 32 ............................G GACGGGGCCGTCAAGCGGATCTGGGGCAACAC 691319 29 100.0 32 ............................. GCCTCCGGGGTGAAGGCGGGACACCGCATCGA 691258 29 96.6 32 ............................A TCTCATCACCCTCCTATGGTCCACGTCCACCG 691197 29 96.6 32 ............................G TAGTAGTTGGGCGTCGACTTGAAGAAGAAGTC 691136 29 100.0 32 ............................. GCGGCCGCCCGGATCGGGACCGTACCCGACCC 691075 29 96.6 32 ............................T GCACAGCCCCGGCGCGATCGCCGGGGCGTCGT 691014 29 96.6 32 ............................T GTCGTCCTTGGAGCCGGTGCAGTGGCGGCTCT 690953 29 93.1 0 ........T...............C.... | T [690930] ========== ====== ====== ====== ============================= ================================= ================== 12 29 97.4 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : AGCCCGTCAACGCGCTCGTCTCGACCATCTTCGCCCAGACCACGCCCGAGGCCGTCATGGCCCAGTACCAGCACGTCATCGACACCCTGAGGGACGCCTTCCCCGAGATCGCTCAGATGTTGAAGGACGCCGAGCCGGACCTGACCGCGTTCGCGGCCTTCCCCCGCGAGCACTGGACCAAGATCTGGTCCAACAACCCCATCGAGCGCCTCAACCGCGAGATCAAGCGCCGCGCAGACGTCGTCCAGGTCTTCCCCGACAGCGACTCCGCACGCCCCCTGATCGGATCCGCCCTGCCAGAGCAACGAGGAGTGGCAGTACGGCGAACGCCGATACCTCTCCCAGACCTCCCTGCAGCGCCTGACCGACATGCTCCACACCGACAACACCGGCGGCGACGGCGGCCGCGCCGCCCTGCCCCCCATCACCACCTGACCGAAAGAACACCACACCAAAAGACTTGACCAGGATCGCGGGCTTGTCGGGGCCCCACAGGTCGG # Right flank : AAGACGGCAAATGGTATAATGAGCCTTTCTCACCAGGATTCGTGTTAAGAATCGTGTCAGGATTCGTGCCAGAGGGTGATGATGACGAGGGCGGCGGCCATGATCGTGGTGATGGTGGCGGGGCCTGGGGAGACTCGTTGCAGGGCCCTGAAGTGCTTGAACATGGCGCCCTCTCTCTTGGCGGGGGCCCGCAGGGTGGACAGCAGGCTGTTGCAGGCCTCCTCGTCGGGGGTCGGGCAGGGGTTCTTCGTGGGGGCCGGCACACCGATCCCCGCGCCCTGGTACCCCTTGTCCGCCAGGACCGGCATCCCCAACCATAGCAAAAATTCAACGAGATGACTTCAGGAGTCGATACTTGAATTTCTTTGAGGTGACGAAGGATTCGAATGCTTCGCAGGTGTCCTCGAAGAAGGCCCTCTGCCTGTTGCTGATGGAGTTCTTGCCCTCGTTCCAGACTTTCTCTATGGGGTTCTTATCGGGGCTGTAGGGCGGCAGGTTGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 704381-693111 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012590.1 Actinomyces sp. oral taxon 414 strain F0588 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 704380 29 100.0 32 ............................. CCCGTGATCGCCGCCGGTCGGGTCGACGTGAC 704319 29 96.6 32 ............................G CTCAGAGTCGTAAGGCCCCAGGTGGAGTGAGT 704258 29 100.0 32 ............................. CATCTCGGCGGGCAGCACCTCGATGAGATCGA 704197 29 96.6 32 ............................T CCAATGCACGAGGTCTCCCGCGAAATCAATAT 704136 29 96.6 33 ............................A TGATCTTCGCCTTGAAATCGTTAATGAAATCTT 704074 29 100.0 32 ............................. CCCGTGATGCCGTACTTGTGCCCGCACTCGGT 704013 29 96.6 32 ............................A CCGCCGCGCGCACCTTCTCGAGGAGCTCAAGG 703952 29 96.6 32 ............................G ACAACACCTCCTCAGCCGTCCGACCAAACCCA 703891 29 96.6 32 ............................T GCGCGGCCCTGCGTCCATTGTCCGATTCCCAG 703830 29 96.6 32 ............................G ATCAACACTGGGGCGGTAAACTAGTCCCGCGG 703769 29 100.0 32 ............................. CAGGCCGCTCCGGACCGGTAAGGGACCGCCCC 703708 29 100.0 33 ............................. CGTGGTCCTAGCGGGGGCGATGGGCGGAGGGAC 703646 29 96.6 32 ............................G CCCGTCACCGTGGCGGACTCGACCGGATCGCC 703585 29 96.6 32 ............................G CGCGCCGACCGGGCGCGCATCGCCGCCCTCAT 703524 29 100.0 32 ............................. CTCGCCGGACTCGACTGAAACCGCACAGAAAG 703463 29 96.6 32 ............................G TCTCCCTCGAGGAATCGCTGAAGGTCAGATGG 703402 29 96.6 32 ............................T CACGGTGGCGCGCTGGGAGTCCGGGGCGACCC 703341 29 100.0 32 ............................. TCCTCGCCCTTCTCAATGGCATTCTTCATGAC 703280 29 100.0 32 ............................. CGATCGGTTAATTTGGGTGCGTGACCGACGCC 703219 29 96.6 32 ............................G TGGGCGCTCGAAGGTGATATCGTGCGCTGATA 703158 29 100.0 32 ............................. GCGCAGGGCCTCGGCGCGGGCCAGCCAGTCGC 703097 29 96.6 32 ............................G AAGCTCATCACTCCCCGCAGCAGATCCATCTC 703036 29 96.6 32 ............................G AGGAAGAACCGAACGGAGCAGGAGGTAAGGAT 702975 29 100.0 32 ............................. CCGCGCTCCCGCTGCCGCCGGCCGACGCCCAG 702914 29 96.6 32 ............................G ATGAGGACGCCGTTGTCAGCGTTGTTGATGGC 702853 29 96.6 32 ............................G CTCATCCGTCCCGTCTTGATCATCATCGCGGG 702792 29 96.6 32 ............................T CCGACCCCATGTCCAATCCCTCGGCCACAGTG 702731 29 96.6 32 ............................T TTGCCAGTGCTCGCCTGTGGGTGTGGGGCTGG 702670 29 96.6 32 ............................G CGTGATCTGCGTGGTCCCGGGCGCGACGTACT 702609 29 96.6 32 ............................T TTGTCAAGAGAATGCTTGCCCATTATTTGAGG 702548 29 96.6 32 ............................T ACACCCATCCTCATCCCTCAGGATGTATGAGC 702487 29 100.0 32 ............................. GTGAAGGTGGATAAGCGGTGCGGTGCTATCAG 702426 29 100.0 32 ............................. TCGAAAGCCTTCGCCATCTGCGCCACAGTCAT 702365 29 100.0 32 ............................. GCAGCATCACCCTGTGGCCGTGGTCAGCCAGA 702304 29 100.0 32 ............................. TGCGAGTGCGGGTAGGAGGTCGCCGGTGTAGG 702243 29 96.6 32 ............................A TTGTGGCGCGGGTACTCGTGGGCGACGTCGGC 702182 29 96.6 32 ............................T GCTCACGGCGTTGGCGAGCATGAGTACGCGAG 702121 29 96.6 32 ............................G TGTAGAATTAAATTGGAGCCCGATTTACTGAC 702060 29 96.6 32 ............................G TCGCGAGGATCGCCGTACGGGAGATCCGAGAT 701999 29 96.6 32 ............................G CCTTTATCCTGGCCGCCGACCAATGGAAACTG 701938 29 96.6 32 ............................T TCGATAGCCCCAAAACCCGTTCGATCCTGAAA 701877 29 96.6 32 ............................T GTTACTGGTGTGACGAATGGGGCAGATGTGAC 701816 29 100.0 32 ............................. GGGAGATCCGAGATCACACCATCCTCATCCCT 701755 29 96.6 32 ............................T CGTCCACATCACCTCCCGCCTCGGCAATGATG 701694 29 96.6 32 ............................T TCTATGTGGCCGCCGCCGTTCCACCATCGGCA 701633 29 100.0 32 ............................. CAGCGAGTTTCCAGCACGACTCTGTACAACGT 701572 29 96.6 32 ............................T TCGATACCGGCAGCGCCAATTCCACGCACGAT 701511 29 96.6 32 ............................G ACCATATCCGGACGCGACTGCATCCCCATCTG 701450 29 96.6 32 ............................T CGGGTGGCGGCGATCCCCGCCGAGATGCGCTT 701389 29 96.6 32 ............................A TCGCGCGAGACGCCCTCCTGGAGGCCTTCCCG 701328 29 96.6 32 ............................G CGCCGCCCCGCCGTCATTGACGACCGGCGGGA 701267 29 96.6 32 ............................T TCGCTTGCAGGAATGTCCGTTGAGGAGGTAGC 701206 29 100.0 32 ............................. TCCCAGTCACACATGACCTCCATCATCGCAGG 701145 29 100.0 32 ............................. GATCTGCGGTATCTGGCCGATCGTGGCCATAG 701084 29 100.0 33 ............................. GGCCGAGTATGCGGATAAATCTTAGGTGCCGAC 701022 29 100.0 32 ............................. CGATGCCCAGGGAGAGCGTGTCCGGAGCGGTA 700961 29 96.6 32 ............................G CCATCACCACAGAGGTGATGAGAACACAACCA 700900 29 96.6 32 ............................T GGGTCAGAACGTGCACAGAATCGATTCTGACG 700839 29 96.6 32 ............................G CCTTTTCACCGGATGCGAATGGAAACTCAAGC 700778 29 96.6 32 ............................T ACGAGGGCGGTGACCGCCTACCGGATGGGGCG 700717 29 100.0 32 ............................. CACGCCCTGAAGGGAGTGCCGCGGGGCCTGGG 700656 29 96.6 32 ............................T TCGATACCGGCGACGCCACCTACACCGGCGAC 700595 29 100.0 32 ............................. CAGGCGACCACCACCATCACCACGGTTTGGAT 700534 29 100.0 32 ............................. CCGTGCACGATATTGCCGCGCTTGAAGATCGC 700473 29 96.6 32 ............................G TCCCGACGGGGGCGGGGCGCTCGCCCTGTCCG 700412 29 96.6 32 ............................G CGCGCCTGGGCCGCCGCCAACATCGCCACCAC 700351 29 100.0 32 ............................. CGTCGTCGTACTCGTCCTTCTCATAGTATTCC 700290 29 100.0 32 ............................. CAGGCGACCACGGTCTGCACCGCAATCTGAAT 700229 29 96.6 32 ............................G GGCGTCTCGCGCGATTTCAGGGCGGGAGAGGT 700168 29 96.6 32 ............................T CCGCGTCAAAATAAAACACGGCCAGACCGTTG 700107 29 96.6 32 ............................G GGTCCTTCGAGGAATCGTTGGAGGTCGGATGG 700046 29 96.6 32 ............................A CGGTCATAATCCGCGTCAAAATAAAACACGGC 699985 29 96.6 32 ............................T CTGCCGCTGTGGGCCACACCGTATGAGTCGGC 699924 29 96.6 32 ............................G CGTTCATCATGCTCACCCGCTCATCCTGCGAG 699863 29 96.6 32 ............................A AGGAATATTCCTTAAATAATGGGCAAGCACTC 699802 29 100.0 32 ............................. GCCCACCATCGGCGGCCCCGGAATAATACCTG 699741 29 96.6 32 ............................T TCTGCGACGGCTCTGTCTGGTCAGTGAAAAAC 699680 29 100.0 32 ............................. CTCGCGAAGGCCTCAGAGAACTTCGAGGTGGA 699619 29 100.0 32 ............................. TCGTGGATAGCCTCCATGACGCCGTAGAGAGT 699558 29 100.0 32 ............................. CCGACGGCCCCGAAGAGTCCGGTCCTCGGTGC 699497 29 96.6 32 ............................T ATCCTCATTCACAGTCACGGGGTAATAATTCT 699436 29 96.6 32 ............................G GTCTCATCCGCCGTCCGCGTCCGGTGCGCCGT 699375 29 100.0 32 ............................. CCCGCCGTCGCGGGAGTATCGGGCGGCGAGGG 699314 29 96.6 33 ............................G TGGCTCACCTCCAATGGGCGCTACCACTGGACC 699252 29 96.6 32 ............................T GTCCACGGAGGACACCATGAACACCAACGTCA 699191 29 96.6 32 ............................T GGAGACGGTGACCCGGTACCGGTAGGCGCCGG 699130 29 100.0 32 ............................. AGGGCGCAGCAAACCGCCAGGACCACAGCCGC 699069 29 96.6 32 ............................T ATTGTGCCCATCGGCGATGATATCCCGGAAGC 699008 29 96.6 32 ............................G CGCGGCCGGGGGCGCGCGCCGCCAACGGCGAC 698947 29 100.0 31 ............................. CCCGCCAACGTCTACCCGGCCATCAAGCGTG 698887 29 100.0 32 ............................. GCCCACGCTCTTGCCGCTGCCGGCGGTGCCGG 698826 29 100.0 32 ............................. GCCCACGCTCTTGCCGCTGCCGGCGGTGCCGG 698765 29 100.0 32 ............................. GGGCGGCCCGTCACCGGCGTGACCACCATCAT 698704 29 100.0 32 ............................. AGCGACTGCATATCAGGGCACTTGACCCTGAA 698643 29 100.0 32 ............................. GGACCATACACATGGTGATGGCCTTGCGCAAC 698582 29 96.6 32 ................T............ CCACCCTGAACGCCCTGCTCGCCCACGCCGCC 698521 29 96.6 32 ............................T GACAGTGTGCTCATGAATCTGCCGCTCTGGGC 698460 29 96.6 32 ............................T GGCCGCCTGGCTGCGCGCCCGCGACGCCGAGG 698399 29 96.6 33 ............................A CAGGCAGTGGGCCTTGAAATTCGAGAAGAACGT 698337 29 100.0 32 ............................. GTCACCCACCGACCCACCGACTGAACCAAGAG 698276 29 96.6 32 ............................A GACGATCTTGTTCTCTCCCTTGACCCGCATGG 698215 29 96.6 32 ............................A ACGTCCTTGAAAATCGCCGACTCGGGCACCAT 698154 29 100.0 32 ............................. ATCATGGCCCACTGCGCAACACTCAGTACACC 698093 29 96.6 32 ............................G TCCGGGCACTGTGATGGCGATGATGCGCTGTG 698032 29 96.6 32 ............................G GCCCTCCGCCCGAGTAAGGATCTCGCGGGCCG 697971 29 96.6 32 ............................G GCCTGGGAGCGGCACACCTCCCTGGTGAGAGC 697910 29 100.0 32 ............................. CACCATGGGGGCGCGGCGCTCGCGGGCAGCGG 697849 29 96.6 32 ............................T GCCCTCCGGTGTGGCGATGAGGACATGGCCGG 697788 29 96.6 33 ............................G GCGGCGGATCGCGGCGGCGTAGCGCTCGACGTC 697726 29 96.6 32 ............................G CGCGCTAGCAGTACGCGCTTCGGCGACGTCGA 697665 29 96.6 32 ............................G CCGTGGCGAGACCATCCGGACCTGCGCCTTGA 697604 29 100.0 32 ............................. CTCATCGACGCCGCCCTGCGGATCACCGGCCC 697543 29 96.6 32 ............................T CGGCATGGGGATGTAGGTCTTGGGGTTCATTA 697482 29 100.0 32 ............................. CTCCGCTCCATCCTGGACGATGTCGACCGAGC 697421 29 96.6 32 ............................G CGGTCGCGTTATCGCCGGTGGCGTCGGACTGG 697360 29 96.6 32 ............................G CGGTCGCGTTATCGCCGGTGGCGTCGGACTGG 697299 29 96.6 32 ............................G ATCTCGCCCTCAAGATAATCGCGCCCGGGCGA 697238 29 96.6 32 ............................T CTCCCGCTCTGGGCGACGCCCTACGAGTCCGC 697177 29 100.0 32 ............................. GGGGCCGTCAGGTCCAGGTCCGCCACCCACCC 697116 29 100.0 33 ............................. TGATACCCGCACTCAGCATTCACCTCACGCAAA 697054 29 96.6 33 ............................T GAGGGGTCTCGCCGGAAAGCCGGAGATCGCCCC 696992 29 100.0 33 ............................. GTGTGGTCGACCTCGCCGGTCACCACGCAGTAG 696930 29 96.6 32 ............................T TCATATCGCGCTGCTGGTTTCCGGAGCGAGTT 696869 29 100.0 32 ............................. GCCGTTGGTCTCCAGATTTCGGATCATGGGGA 696808 29 93.1 33 .....T......................A CGGCGGGCGCTCGGACAGTTCGTCGCCCGCGAG 696746 29 96.6 32 ............................A GGAGCCGGGTGTCCAGGTCGAGGGCGGCGACG 696685 29 96.6 32 ............................T GAGCTTCTCCGACGCCGAGCAGCAGCTGCTGA 696624 29 100.0 32 ............................. GGCCGCGTCCTTGCCCCAGCAGGCGACCAGGA 696563 29 100.0 32 ............................. GGGGGAGAAGGAACCCGCCTGCGGACCGCCGC 696502 29 96.6 32 ............................T ATCCGCATTGGGCAGTGTTTTCGCGTACTCGC 696441 29 100.0 32 ............................. ATCTACGGCGGGGACACGTGGCGCAATTTCGG 696380 29 100.0 32 ............................. GTCGAGCGCGACGCCGCTGCGCCCGCGAGCCG 696319 29 100.0 32 ............................. GTCAATCCCGGGCGGCATATTACGCCATTTAA 696258 29 100.0 32 ............................. GCGCTCGACGGCGTCCGAAAGACTCGGCTTGA 696197 29 96.6 32 ............................G CAGCTCTCCGGGCGGCCGCCCCCACCACAAAA 696136 29 96.6 32 ............................A CGCCGCCCACGCTGGCCCGCTCGCAGTGGGGC 696075 29 100.0 32 ............................. GTGCTTCTCCTCGCCAGAATTGACGTTCATGG 696014 29 96.6 32 ............................T TCGATCGCAGCATACGGGTAGCACGCGAACTT 695953 29 100.0 32 ............................. CAATCCGCAGCCTGATACTGATACGCGATCGA 695892 29 96.6 32 ............................G CCCGCGTCTCGATGAGAGTATCCGCGACCATG 695831 29 100.0 32 ............................. TGCACGTCGGGCTCCTGCCCCTCCACAGTACC 695770 29 96.6 32 ............................G CCGGCAAGCCGCTGAGCCTCAGACAGGACTGT 695709 29 96.6 32 ............................G CGCACCGAGAACCGGCGCCTTAGGCGGCGCCG 695648 29 100.0 32 ............................. TGGGGCGCCTCGGAATTGACGGCCCGTGTTTT 695587 29 96.6 32 ............................G GTCATCACGGCGCATTTCCAGGCCGACGCGAC 695526 29 96.6 33 ............................T CCATATTGCCGATGTGCTCCTTCCGGCGCCAGA 695464 29 96.6 32 ............................G CCTACAAAGCCGCCGCCCAACGACTCGCCACC 695403 29 96.6 32 ............................T TGGTCGCTGAAAGGGCCGGTCGTGTGGGTCTC 695342 29 100.0 32 ............................. CTGCCCGCACCTGCCCGCACGTGCTCGACGCG 695281 29 96.6 32 ............................T TATAATCCCGCGGGGATGCCGACTTTCGCGGC 695220 29 96.6 32 ............................G GCTCCGATGCGTCTGCCACTGAAGAGGGCGTT 695159 29 96.6 32 ............................G GCGAAGAAGCCGCTGTGGAAGCGCTGGTGGTT 695098 29 100.0 32 ............................. TCGGTTCCGCAGCACTCGCAGCACTCCCCGTA 695037 29 96.6 32 ............................T CTGAATGATCCTCGACGGGGCGTCCGCACGGT 694976 29 100.0 33 ............................. GGTACCCCGTGGGCGGGGCTAGGTCAAGGGAAA 694914 29 100.0 33 ............................. ACCTCCCTCACTACTCGGCCACACTCAGCGTAG 694852 29 100.0 32 ............................. AATTCCGTTGAGTCGCAGGCGGGCACCGTATT 694791 29 100.0 33 ............................. ACCTCCCTCACTACTCGGCCACACTCAGCGTAG 694729 29 100.0 32 ............................. GCGATGACCTCGTCATTCGCATAAAACCCCGG 694668 29 96.6 32 ............................T TGTCGCCGGGCCTGTAGCCGGCGCCGGGCTGT 694607 29 96.6 32 ............................G AATGTGGTCGTGGCGCGCATCTCGGTTTTGTA 694546 29 96.6 33 ............................T GGTCGACGTCGACGTTGCCGCCTCCTTGGCGAC 694484 29 100.0 32 ............................. CCGGCGGCCACGGGCACCATGCCCGCGTGGGC 694423 29 96.6 32 ............................T AACCGCACTTATCATCCCCGCGCACTTCCCTC 694362 29 96.6 32 ............................G GCGAAGAATGCCGAGGCGCTCAAGGCCGCGCA 694301 29 96.6 32 ............................G GGCGGTGAATTCGGCGCCGCTCATGGTGGCGC 694240 29 100.0 32 ............................. TCTTCCTTCTGCGTGACATTCCCATTCCTTGT 694179 29 93.1 32 ...................A........T CACGACGCCGATCGTTTCCTCGCAAGCCAGCA 694118 29 96.6 32 ............................T GATCGAGGAGCCCCGCCCGGGTCTGTCCGCCC 694057 29 100.0 32 ............................. TCGTCCTCCGCCCCTTCGGACAAATATCCGGG 693996 29 96.6 33 ............................A GGATGCGGGCGGCCCAGGCCAGGGCCATAGTGG 693934 29 96.6 32 ............................T CCGCCGATGGTCCGGCGCGGGCTCCTCGGCCG 693873 29 100.0 32 ............................. CGGGAGGATCTGCTCTACGAGCAGCCCGCGTC 693812 29 96.6 32 ............................G GACCGCCTGCAGGCGGTGCTGGACGTGATCAG 693751 29 96.6 32 ............................G CCGATCAATGCGGCGGCCGTCGAGGTGCAGGT 693690 29 96.6 32 ............................G CGCCCCGGGCGCGAGATCGGACAAGTTCTTCT 693629 29 100.0 33 ............................. CACCGCAGTCAGTTTCCGGAAGCTCAGCAAGGC 693567 29 100.0 32 ............................. CGGGCCGGCCTGGCCGCCCTGATCGACTACGT 693506 29 96.6 32 ............................T GCCCTGCGCCTGCATCTCAGCGATGATCCGCT 693445 29 96.6 32 ............................T CGGCCGGACCGAGGACGGAGAGGATACCGTCG 693384 29 96.6 33 ............................A GGATCGCGGGCTTGTCGGGGCCCCACAGGTCGG 693322 29 100.0 32 ............................. GTGGACGTCGTCGTGGTGCGGTGCGGTCGTGG 693261 29 100.0 32 ............................. GCCAGGACGGCGCCGCCGGCCAGGACGATCGC 693200 29 96.6 32 ............................T CGGCCGGACCGAGGACGGAGAGGATACCGTCG 693139 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 185 29 97.9 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : GCATCCACGAGATCGGGGTGCGCCGCTCCTTCGGCGCGACGAGCCGCCGGATCTTCTTCTCGATCATGCTGGAGTCAGTGGTGGCGACGATCGTGGCCGGCATCGTCGGCGTCGGCATCGCAGTGGTGGCCCTGCGGGTGGTGCCGCTGGGCGCCATCCTGTCGGACATCCCGGTGCCGGACAACCCGCCCTTCCCCATGTCCGCCGCGCTCATCGGACTGGTGGCGGCATCCGGGGTCGGAGCCCTGGCGGGGATCATCCCCGCAATCGTGGCGGTGCGGATCCGCCCGATCGATGCGATCCGCTTCTAGCCGGACGCCGTTCCCCCGTCCGGGCGCCGGGGCTGAGGCTGTGGCGGTCGAGCCATGTCCAGTAGTGATGTATGTCACTCCTGGCGAGGCGGCGCTACCACGACCCGACGAGCGGGCCCTAGGTCGGCAGTGAAGGCAACCGGGGTCTGGTAGAGTATGGGTTCGTTGGGATTCCAAGGATCCGCAAGT # Right flank : GGATCGCGGGTGCGTCTCTTAGTGTGGTGGCAATTCCCGCGGGGCCCTCGGCGTCGAGGGGCCCGCCGGCCCGGGAGGGCGGCGGGCATCGTGGGAGTCCTGTTCCTCGACCAAGATTCACAAGGAGTGCACCCGCGATGCCCGCCACGAACCAGTCTGCCGTGTCCACGCTGATCCGGGAAGTCCTGGCCGACCCCGATCTGGCTCACGATGACGTCTTCCGCCGCCTGCTCCAGGCCGGGCTGCAGGACCTGGTCGACGCCGAGGCCGCCGCCGTGATCGGCGCGCAGCGCTACGAGCGCACCCCGCAGCGCACCAACCGCCGCAACGGCACGAGGCCCAAGACGGTGGCCACCACCGCCGGGGAGGTCGAACTGGCCATCCCCAAGCTTCGCACCGGGTCGTTCTTCCCCTCCCTGCTCCACCCGCGCAGGCGCGTGGACAAGGCCCTGTACGCGGTGATCTGCTCCGCGTGGATCGAGGGCGTGTCCACGCGCAAG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 865307-866356 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012590.1 Actinomyces sp. oral taxon 414 strain F0588 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 865307 37 100.0 36 ..................................... TCAACACGATGCACGAAATGCGTCACGTCCACCTTG 865380 37 100.0 36 ..................................... TCAACACGATGCACGAAATGCGTCACGTCCACCTTG 865453 37 100.0 36 ..................................... TCAACACGATGCACGAAATGCGTCACGTCCACCTTG 865526 37 100.0 35 ..................................... GTGGCTGATAACGCTGGCCAGTGTCATCAGCCAGC 865598 37 100.0 35 ..................................... CCGGGAAGGAAAAAGGTGATGATGATCATTCCGGC 865670 37 100.0 35 ..................................... GTGGCTGATAACGCTGGCCAGTGTCATCAGCCAGC 865742 37 100.0 36 ..................................... AGTGAAAGACGCCAATATAGTACTGGCTGGTCTCGA 865815 37 100.0 34 ..................................... CCAAATCCCGGGCGGCGGCCTGGCGAGCTTCGAG 865886 37 100.0 35 ..................................... TTGTCGCCGTAGAACTTGTCGACCTCCTCCGGGGG 865958 37 100.0 35 ..................................... TTGTCGCCGTAGAACTTGTCGACCTCCTCCGGGGG 866030 37 100.0 36 ..................................... CGGCGCCGCAGCGCCGCCGCTTCTTCATCTCTCTTG 866103 37 100.0 36 ..................................... CCGGGGTATCGCCCCGGAACTGGCCCTTGAACTCCC 866176 37 100.0 36 ..................................... CAAGGCGGCCCGCCTGTCGGCAGGATTCCACGTAGC 866249 37 100.0 35 ..................................... TCCTCGGCGCCCTCTCTCATGAGCTCGCGCTCCCA 866321 36 75.7 0 .................G.....G...-..AGTCCC. | ========== ====== ====== ====== ===================================== ==================================== ================== 15 37 98.4 36 GTCAGGGAGCACCACGCACCTGTAGGTGCATTGAGAC # Left flank : GCTTCTTGAAATGAGTCCAGACGACTCACTGAATGATTTTCTCGGCGCACGGGATGTTCGACGGCGGTCTCGTCCGGGGCCGCCGGAATGGTCTTCGGGTCCTCCGGAATGGTCGGGGGATCGTGCTCGTTCCGGTCGGGGGCTGGACTCGTTCCTTCCGGCTCGGGTGTCCGCGTCGGGTCCGGCCGGGGTGCGGGGGCGTCCTCGGCGGGTCCAGCCCGGTTGGTGTTGGAGGTGCTGTTGTGGCTGGTGGGGCAGTATAGTGAACAGGGTGTCATGTTACATGTTTGCAAGATGGTGCTCCGACACCGACCTTTCCGCATGACCTCGTCAGAAGTTGGCGCGCGGAGGGCTCTGAGGGCCGTCGGTGGCGCTTGGCGTGATTCCGCCACTATGTGCTAATCTGGACTCGGTGCTGGCCGGTCCGGAGGGGTGCTCCCGGGGCCGGTGGCGCTCCGGGCCCTCGAAGTGGCGTTATACCGCCACTCTCGGAGGCAGGG # Right flank : CCGACCGGCTTGGCATGTCAACGATGGACGTCCTCGGAATCGTGCAGGACCTGGCGGCCCGAGGTGCCGGCGTCGAGTTCATTGACGCCCCCGCCCTGAGCGCGACCACATCCCAAGGTGAGTTCATGCTGATCATCCTCGCCGCCGAGGCCCAGCTCGAACGGTCCATGATCCGCGAGCGTCAAGCCGAGGGATCGCCCTGGCCAAGGTGCGTGGCGTCTACGTGAAGGGGCCCACGCCCATCGGCTGCGCCGAGTTATCCACAGGGTGTGCAGTTTCCGCCGGTCTCGCGTGTCGTTTCCGCCGGTTTCGGTGAAAGGGGGCGGGGTGGGCTCAGTCCAGCTGCTCGAACTTGCGCGCCCAGGCGGTGCGGATCGGGTTGGCGTCGGCGATCATGGCGTCGAAGCGCTCGTCGGCGATGTCAATGACCTCGCCCAGGGCCGCGCGGGCCTCCCGGGCGGGGGAGCTGTGCACCCGCGCCCAGCCGCGGGCGATGAGCC # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGGAGCACCACGCACCTGTAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.10,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 8 1024501-1024906 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012590.1 Actinomyces sp. oral taxon 414 strain F0588 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1024501 37 100.0 36 ..................................... TCAGGAACTGAAGGAGACCATTGCCAACCTCGACAC 1024574 37 100.0 39 ..................................... CGGAGAGAGTGGTTTCCCCGTTAACGACATGCCCTACGG 1024650 37 100.0 38 ..................................... GCCCTGACTTCGGCAACGGAGAGACCGGGGGCGACAAC 1024725 37 100.0 35 ..................................... ACTGCAAGGATAGAACAATCATCGTAGCAGGTCTG 1024797 37 100.0 36 ..................................... GTGTACGAGCTTATCATTATCGGCTTCGTGCCAATG 1024870 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 100.0 37 GTCTCAATGCACCTACAGGTGCGTGGTGCTCCCTGAC # Left flank : GCCCCGGCCCGTCGTTCTTCCGTGAGCGCGTAGGTTTCCAGTCGAACGCGTACCTCCCGTCTGCGCGTTCGACTGGAAACCTACGCGCTCACGAAGGGTCGGGGGCGTCCCGGCGGGACGAGGGGATGAGACACCCGGGATCGGTCCGGGTGGCGGGGGCCTTCCCGGGTCGGCGTTCCCGCGGGCCCGGCGGGGTTGTCGAAGTGGTCACCGCGGTCGTCGGGGGCGCCCGAACCGCCTCCGACGACCGGCCCGCGGACGCCCCTCCCCGGCCGGTCCGCGCCGGCGGGTTGTCCAAATCTGCCACAAAGGCCCGGATCGAACCGGAGCGCGCGAGAAGAAACGTTGATATTCCGCGCCTCCGCTCACCGCCGATCCCGGCCCGGAGCGCCTTTGTGGCAGATTTGGACACACCCCACCCCGAACCATCCCACCAACCCCACCAGTACCACCCAGAACCTGGATACACCCAGAATAACCTTCACTGCCAGGGTGGGACA # Right flank : CCCCTGCCTCCAAGAGTGGCGGTATGACGCCACTTCGAGGGCCTGGATCGCCACCGGCCCCGGGAGCACCCCTGCGGACCGGCCAGCACCGGGCTCAGACTAGCACATAGTGGCGGAATCACGCCAAGCGCCACCGACGGCCCTTCGGGCCTCTCGCGCGCCAACTTTCAACCAGGTCATGCGGAAAGGTCGGTGTCGGAGCGCCATCTTGCAAACATGTAACATGACACCCTGTTCACTATACCGCCCCACCAGTCACAACAGCATCTCCAGCACCAACCGGGCCAGCCCCGCCGAGGACTCTCCGCACCCCGGCTGGACCCGACGCGGACACCCGAGCCCGAACGAGCCCGGCCCCGAGCCTCGACCGGAACGGGTACGATCCCCCGACCATTCCGGAGGACCTGAAGATCATTTCGGCAGCCCTGTACGAGACCGCCGTCGGGCGTTCTGCGCGCCGAGGAAATTATTCAGCGAGGCGTCCGGGCTCATTTCAAGGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAATGCACCTACAGGTGCGTGGTGCTCCCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 9 1208301-1208999 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012590.1 Actinomyces sp. oral taxon 414 strain F0588 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1208301 37 100.0 38 ..................................... GGAAGACATCCTTACGGAGTCCGGTGACCTCGTGCCTG 1208376 37 100.0 36 ..................................... AAGATACCCAAGTAGTACCGCTTGGACTCAATGAGC 1208449 37 100.0 37 ..................................... TCATCGCTGCAAAACGCGTCGACCTCCTCCGGGGAGA 1208523 37 100.0 37 ..................................... GTCGGCCCGAACTGCCGCTTCGGCAGCGAGACAGGCG 1208597 37 100.0 37 ..................................... GTCGGCCCGAACTGCCGCTTCGGCAGCGAGACAGGCG 1208671 37 100.0 38 ..................................... ACCCAGGCCTGGAAGGCTTGGGCCTCCTCCCGGGAGGC 1208746 37 100.0 38 ..................................... GGAGCGGCGTCGGGCGACGGCGATGAGACCGGCGATGA 1208821 37 100.0 36 ..................................... TGTGGAGCGTACCAGCAATACTGGCACCCGCTCCTC 1208894 37 100.0 32 ..................................... ATTGAGAATGAGGGGTGTTGGGCTCAAGCGGC 1208963 37 86.5 0 ..........G.......GT...........C...C. | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 98.7 37 GTCAGGGAGCACCACGCACCTGTAGGTGCATTGAGAC # Left flank : GTATTCCGATGCGTGCGCACGCACCATGATATTATAAGCACAGGTGCGGGGATTTCGCGGGAATCGAGCTCTTGGTCGCCATGAGAAGGGTGGCTTTCGACGCGCGGAATATTCGACGGCGGTCTCGTCCGGGATTGCCGTTCCGGTCGGGTGCGGGGCACTCGCGTCGGGGTCGGCCGGGGTGCGAGGCGGCCCCGGCGGGGTCCGTCGGGGCCGCCGAGGCTGGTGCTGGAGGTGCTGCTGTGGCTGGTGGGGCGGTATAGCGAACAGGGTGTCACGTTACACGTTTGCTGCAAGGCCCTCCAACGCCGACCTTTCGGCATGACCTGGTTGAAAGTTGGCGCGCGGAGGGCTTGGAGGGCCGTCGGTGGCGCTTGGCGTGATTCCGCCACTATGTGCTACTCTGGGCCCGGTGCTGGCCGGTCCGGAGGGGTGCTCCCGGGGCCGGTGGCGCTCCGGGCCCTCGAAGTGGCGTCATACCGCCGCTCCCGAGGGCAGGG # Right flank : CTTTATTGCCGGAGGGACTCTGGGGCGGGCTGGGGGTCGCGGTATCTTCGAGCTGGTCGTCATCGGGTCGCGCGGGGCGGGCTCTGAGGGATCGATAGAGATCGGCGATGGGCAGGGGTCAGCTCCGGGGTCGCCCGTACGGTGTTGTGGGCGCGTCCGCGGTGCCGGGGCGGGTGCCATCGGGATCGGGTGTGCGGTGCGGGGCCGGTCGGGGCGGTACTGCACATTCGACCGGGACCCGCCGCCGAAGGATCCGCGGAATCATGCGGAAAAGCCTTGACGATCAACTCCGGTGAAATCCTCCCATGTGCAGAGCGGGCCCCTCTGCACATGGGAGAGCGTCAACAAGAAGATGACGATCTACGGGAACCGCGGAATCGTGTGGAAAACCCGGAATCGGATCGCGGAGTCTTCTCTCTCCCATGTGCAATAACCTCCGCAACCGTCCTGGGGAAGACCCGGCCCGTTTGAGGGGGCTCTCATTGGGAACTCGCCACTGC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGGAGCACCACGCACCTGTAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.10,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 10 1275163-1274981 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012590.1 Actinomyces sp. oral taxon 414 strain F0588 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 1275162 35 100.0 39 ................................... ACAACGTCGCCCGGGATCCACGCCATGAAGCTGCTGAAG 1275088 35 100.0 38 ................................... ACCCGCCGATGACGGCGGCGCCGATCCGCCATCGCCTT 1275015 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================= ================== 3 35 100.0 39 GTCAGGGAGCACCACGCACCTGTAGGTGCATTGAG # Left flank : AGCGGGCGTCTGCATGCATTTCCGGGAAGCGATATTATGATGGCCCACCCCCATGAGGTACAATGGCCTACGAAATCAACATCCACGACCTCACGAGAAACGGACCATCGTCATGAATTATACCACGGGACTGCCGACCTCCTGGGGCCGGGCTCGTTCGGGCCCGGGTGTCCGCGTCGGGTCCGGTCGGGGTGCGGGGCGGTCTCGGTGGGTTCGGCCCGGTTGGTGCTGGAGGTGTTGTTGTGGCTGGTGGGGCAGTATAGTGAACAGGGTGTCATGTTACATGTTTGCAAGATGGTGCTCCGACACCGACCTTTCCGCATGACCTGGTTGAAAGTTGGCGCGCGAGAGGCCCGAAGGGCCGTCGGTGGCGCTTGGCGTGATTGCGCCACTATGTGCTAGTCTGAGCCCGGTGCTGGCCGGTCCGGAGGGGTGCTCCCGGGGTCGGTGGCGCTCCGGGCCCTCGAAGTGGCGTCATACCGCCGCTCTCGGAGGCAGGG # Right flank : CTTTTCTCGCCAAGGGTGGTGGCGCGGGGTCGGTGTGGCGGGTGCTGTCTTCTGCGGGGTTCGGGTGGGGCCGGGTTCTCGAATGGCGGGGTTCCGCGGCCGCACTGCCGAGCCCGATGGGCGCGGATCGGGTTTGGCGGTGGGAGTCCTGGCGGAGAGCCGTTTCCGGGCGGGACGGGCTCTTTCGGGGGCGCGTCTCGTAGTGTGGTGGCGCCGGTGACGTCGTGGGGCTCCTGTTCAGCGGCCCCGGGGCCCGCGGGGGAGGCCGCGCCGAACCGTCTGCTACGCCTCTTTCTCTCTGCTACGCCCTTTCACCCTCCACTACGCTCCTTTTTCCCGTACAGCAGAGGGTGAAGAGGCGTAGTAAAGAGAAAAGAGCGTAGCAGAGGAGTAAAAACGGCGCGCGTCTCCCATTGAACCCTTCTCATCGGCAACGGCGGCTCAGAGGCCGGGGATCGGCGCGGTGCTGCGGGAAGAACGGGCGCGAAGTGGGGGTGGTG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGGAGCACCACGCACCTGTAGGTGCATTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 11 1398972-1398355 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012590.1 Actinomyces sp. oral taxon 414 strain F0588 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1398971 37 100.0 36 ..................................... AAGATTTGGAGGGCTTCGTCCGCCGTCGCCGGCGTA 1398898 37 100.0 34 ..................................... AAAAAAGACCAAACCCCGAGTGAAACTGGCGCGC 1398827 37 100.0 35 ..................................... ATTGATGCCGGTGATGAGACCGGCGACGCCAGCCA 1398755 37 100.0 37 ..................................... GACATGGCATACCACGTATACGCGTGGCTGACGACGG 1398681 37 100.0 35 ..................................... ACACGACCTTGCGGCCGCGGTCTACTTTGACCAGG 1398609 37 100.0 36 ..................................... ACGCGTACGGTCTCTCCGGGGTTGTCCAGTGCAAGT 1398536 37 97.3 36 .........................A........... TGGTCGTCGGCCTTCAGGACGGATGTCCAGGCCTTG 1398463 37 97.3 35 ...........................A......... AGACGGACTGCGCTGCGGGCGCCGTCCGAGATAAT 1398391 37 89.2 0 .............G...........A......A..G. | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 98.2 36 GTCAGGGAGCACCACGCACCTGTAGGTGCATTGAGAC # Left flank : GCGACGGTCTCTGACGCAGGTTCTTGGTCGCCGCGAGGAGGGTGGTTACTCGCGAATGAGTCCAGACGTTTTGAGAACAATCTTCTCGGCGCGCAGAATATTCGATGTGAGGGCTCATTCCGGTCCGCCGGGCCGGTTGGGAGCCCGTGCTTGTCCCGGTCGGGCGAGGGGGCATGTCGTGTCCGGTCGGGGTGCGGGGCGGCCTCGGCGAGGTCGACCCGATTGGTACTGGAGGTGCTGTTGTGGCTGGTGGGGCAGTATAGTGAACAGGGTGTCATGTTACATGTTTGCAAGATGGCGCTCCGACACCGACTTTTCCGCATGACCTGGTTGAAAGTTGGCGCGCGGAGGGCTTGGAGGGCCGTCGGTGGCGCTTGGCGTGATTCCGCCACTATGTGCTAGTCTGAGCCCGGTGCTGGCCGGTCCGCAGGGGTGCTCCCGGGGCCGGTGGCGCTCCGGGCCCTCGAAGTGGCGTCATACCGCCACTCCCGAGAGCAGGG # Right flank : CAGTTCACATATGAGGTCGACGAACTCGACCGGAGTGCCGGGTGGCTGTGTGCTTGTGGGTGCGTCGGGGTTGATGAATCGCTGTTCTGTTCGTGCGCTTCTGTTTTCTCAGGAGGTGCGGGGGCAGGGATCGTCCGCCCCGGGGCCTCGGGGTGATGGTGTCGATCAGCTGCCCGCCGGCGGGGGCGTCGTCCCTCCAGTGCAAGGTGGGCCCGAAGGCCCCGGTCCCGGAGCCGCCCGCGCCGCCCGCCGTTCGCGCCGCCGGGGGCGGGGCGGAACGGGGAGAAGGAGAAGGAGACCCACGGGCTCAGCAGCGGCCGCGCCCACGCCCATCGTCCCCCTTCTCCCCGCGCCCTCACGCGTCGGCGCGCACCAACCGCGCCGCGCCGACCGCCGTCGCCGCCGCCGTCCACGCCAGGGCGATGAGCCCGGCGGCGACGACGTCGTCGTGCGAGGCGGCGCCCGCCACCCAGATCTGACCCGCCCGACCCGGAAGCCAG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGGAGCACCACGCACCTGTAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 12 1512735-1512992 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012590.1 Actinomyces sp. oral taxon 414 strain F0588 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1512735 37 100.0 36 ..................................... AATTCGGCGAGCTATTTTCGGCGGGCTTAGCCCTTG 1512808 37 100.0 37 ..................................... GCAATGATGCCAGCCATGTAGGCGGCACCATATCCCA 1512882 37 100.0 37 ..................................... TCGACGACGATGGCCATGACGGCTACGGCGCCGATGG 1512956 36 83.8 0 .......................-..C..TAC..A.. | A [1512984] ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 96.0 37 GTCAGGGAGCACCACGCACCTGTAGGTGCATTGAGAC # Left flank : TCTCCTGTGGGCGGTGCGGGTGGATTCTCCAGAACTTGATGTGGGCGATGGTCTGCTCTCTCGGCCTGGCGTACCTTGAATCGCCTTCCGACGGCGGTCTCGTGCGGGTCCTCCGGACTGGTTGGGAGATCATGCTCGGTCGAGGCGGGATCGTCTCGGCCGGGCCGGGTGTCCGTGTCGGGTCCGACCGGGTGCGGGGCGGCCTCGGTGGGTCCAGCCCGGTTGGTGCTGGAGGTGCTGCTGTGGCCAGTGGGGTAGTATAGTGAACGGGGTGTCATGTTACATGTTTGCAAGATGGTGCTCCGACACCGACTTTTCCGCATGACCTGGTTGAAAGTTGGCGCGCGGAGGGCTCTGAGGGCCGTCGGTGGCGCTTGGCGTGATTCCGCCACTATGTGCTAGTCTGAGCCCGGTGCTGGCCGGTCCGGAGGAGTGCTCCCGGGGCCGGTGGCGCTCCGGGCCCTCGAAGTGGCGTCATACCGCCACTCCCGAGAGCAGGG # Right flank : CAAGATAAACCGCCGTTGATTCGGCTCGTCCGCGGAGGCGGACGGTCCTCGCGGGGCCTGCATGAAGCGGATTGACGCCAAGGTCGCCGAGATCACGGGGGAGAAGCGGGACGGGAAGAAGGAGGAAGATCAAGGACGGCGGGATACCGAGAAGAAGAGCCGCGAGGATGTCATAGTGGTATCCGCCGACGAGGTGGGCGCCTGGCACGAGGCGGTTATTCGACGGGCCTGGTGCAAGAGGTGCGCCAAGACTAAGATCAGGATCGACCGGGAACGACGGTCCCGGAAGTACATCGGGGTCCTCTACGAATCGGACGGGAGGGTGGGCCTCGTGCGACTGGGGCGGTGCAATACCGACAACGTCGTGAAGGTCCGACCGAACTCACTCAGAAAACTTTCCAGGACCGCCTGGGCCCGTAGCGGATTCGTATAAAACACTATCCCGGACCGGTCCCCGCGCACACCGGCGGCAGGTCCGGGGAAATCCGGCGCGTCCACAG # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGGAGCACCACGCACCTGTAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.10,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 13 1951721-1951315 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012590.1 Actinomyces sp. oral taxon 414 strain F0588 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1951720 37 100.0 36 ..................................... ACCTCCTGGAATTCACCCAGGAGATGATGTTTGAGT 1951647 37 100.0 37 ..................................... GTATAGAGAGAATATCAACAAGGGGCGACAGCGCCAC 1951573 37 100.0 36 ..................................... AAAAATTGTTACCGTGTGCGACAAGGGGTCTGTCCA 1951500 37 100.0 37 ..................................... AGAACAAGAAGGCTCGTTTCAACGATGAGCACCCGTT 1951426 37 100.0 38 ..................................... AGGAGCCCATCGGCGTTAGGGTCGTTTTCCTGGGGATG 1951351 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 100.0 37 GTCTCAATGCACCTACAGGTGCGTGGTGCTCCCTGAC # Left flank : GAACCACGCCCCCCGGCCCGGCAGCGCCTGCCACTCCCGCAACGACTCGGCCGAGGGACAGGCCTCATCGACATCCACCAACCTGCGCCGCCCGCCCTCCTCGACCAGCCACGGCCTGATGAACTGGCACAGGCCCACCCCGCCGCACTCCACCTCCACCCGCCGCGCACCCGTCCCCTCCAGCAACTCGCGCAACTGAACCCGCGTGCTGTTGAACTCGCCCCGGGCTATGCGCTCGCGCTCACCCGGCGAATAGAAATCATGAAGCGCCACCAGCCCCTCCTTCCTTCACAACTGAAACGGCTACAACAAGACAACCCGGGATCACCGGATACCACCGCCGGGGGCGGACGAGCTCGCCCCCGAAGGGACCACCTGACCTGACCCCGATGACTGGACCGGAAAAGCAGACGTATAACCCCCGCCCCCGCACCGCCCGAGAAAACATAAGCGCGGCGCCCCCGACCCACTGAGGTCAAGCGTCTGCTTGGCCTCGCTAT # Right flank : CCCTGCTCTCGGGAGTGGCGGTATGACGCCACTTCGAGGGCCCGGAGCGCCACCGGCCCCGGGAGCACCCCTGCGGACCGGCCAGCACCAGGCTCAGACTAGCACATAGTGGCGCAATCACGCCAAGCGCCACCGACGGCCCTCAGAGCCCTCCGCGCGCCAACTTTCAACCAGGTCATGCGGAAAAGTCGGTGTCGGAGCACCATCTTGCAAACATGTAACATGACACCCTGTTCACTATACCGCCCCACCAGCCACAACAACACCTCCAGCACCAACCGGGCCAGCCCCGCCAAGAATACCCCGCACCCCGGCTGGACCCGACGCAGACGCCCGGGCCGGAACGAGCCTGGCCCTGAGCTCCGACCGGAACGAGCACAATCCCCCGACCATTCCGGAGGACCCGAAGACTATTCCGGAGGACCCGCACGAGACCGCCGTCGGGCATTCTGCGCGCCGAGGAAATAATTCAGTGAGGCGTCTGGACTTATTTCGAGGAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAATGCACCTACAGGTGCGTGGTGCTCCCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.10,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 14 2009084-2008613 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012590.1 Actinomyces sp. oral taxon 414 strain F0588 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2009083 37 100.0 38 ..................................... CCCAGGGTTGTCCTGAGCGAGTCGGATACCGCGTTCGA 2009008 37 100.0 35 ..................................... GTAACTGGCACGCCCATCAAAGGTCACGGGGTGCT 2008936 37 100.0 34 ..................................... GGCAGCTGGAAGCCCGAAGACCCTCAGTGTATCT 2008865 37 100.0 35 ..................................... TCCCACAACACGAGACTAACAATAAAGGCGATCAG 2008793 37 100.0 33 ..................................... TTGGCCCTCGTGGCGAAGATATCGCACATGGCA 2008723 37 100.0 37 ..................................... TGAGCACACGGATCTGCGTGTCGAGGTTCTTGATGGT 2008649 37 94.6 0 ...................................GT | ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 99.2 36 GTCAGGGAGCACCACGCACCTGTAGGTGCATTGAGAC # Left flank : GTATTCCGATGCGCGCGCGTGCCGGAATTGGTCGTCGCTAGCAGGGCGGTTATCGGCGTGCGGAATGTTCGACGGCGGTCTCGTTCGGGGCTGCTGGAATGGTCTTCGGGTTTGCCGGAATGGTCGGGGGATTTTGCTCGTTCCGGTCGGGGCTCGTTCGGGCCTTGGACGTCCCTGTCGACCCCGGCCGGGGTGCGGGGCGTCCCCGGTGGGTTCGGCCCGGTTGGTGCTGGAGGTGCTGTTGTGGCTGGTGGGGCAGTATAGTGAACAGGGTGTCATGTTACATGTTTGCAAGATGGTGCTCCGACGCCGACTTTTCCGCATGACCTGGTTGAAAGTTGGCGCGCGGAGGGCTCTGAGGGCCTTCGGTGGCGCTTGGCGTGATTCCGCCACTATGTGCTAGTCTGAGTCCGGTGCTGGCCGGTCCGGAGGGGTGCTCCCGGGGCCGGTGGCGCTCCGGGCCCTCGAAGTGGCGTCATACCGCCGCTCTCGGAGGCAGG # Right flank : CTCGCCTCTACTGAGGACAATGAGTCTTTCTCACCAGGATGACCCCCGGCCCTTGAGCCGCCGTTCCTGGTGAGAAGGGCTCAATGGGAGACGCACGCCGCTTCTTCCCCATCTGCTACGCTCTTTTCTCTTTACTACGCCTCTTTACCCTCTGGTGTACGGGAAAAAGGAGCGTAGCGGAGGGGGAAAGAGCGTAGCAGAGGGAAAGGGGCGTAGCAGACGGTTCGGCGCGGCCTCTCCCGCGGGCCCCGGGGCCGCTGAACAGGAGACCTACGGCCCCACCGGCGCCACCACACTAAGGGACGCCCCCTCACGTGTCGTTTCCACCGGTTTCGGCATGATTCCGCGGTTCGTGCGTCCGCCCTCGAAAAAGCGCCTCCGGCCGTCGTCCCCCGTCGCTCTCGAGAGCGAGTGCGATGATGTCCTGCGGCCCTCGGTCAGGACGCCGTCCTCCGCCGTTCCCGGGAGCGAGGCGCGCCTCTGGAGGATCATCGCGGCGA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGGAGCACCACGCACCTGTAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 15 2277582-2278269 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012590.1 Actinomyces sp. oral taxon 414 strain F0588 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2277582 37 100.0 35 ..................................... CGAGCTCGTCGACGATCTTATTGCGATTCGGATCC 2277654 37 100.0 37 ..................................... TTGCCCCACTTGGGGGCGGTAGCGTCCTGTGCTGGCG 2277728 37 100.0 31 ..................................... CACTTGACGTAGAGGTCGTCTGCGTCAAAGC 2277796 37 100.0 37 ..................................... TTGCCCCACTTGGGGGCGGTAGCGTCCTGTGCTGGCG 2277870 37 100.0 31 ..................................... CACTTGACGTAGAGGTCGTCTGCGTCAAAGC 2277938 37 100.0 36 ..................................... GCGTTAGCCCTTTAGCACATCTCTCCAGGCCGCCCG 2278011 37 100.0 37 ..................................... TGGTGGAATACCTGTAGGGCCTCGTCCGCCGTCGCCG 2278085 37 100.0 37 ..................................... CCCACGGGGTGACGAGGGCAGCGAGGACGACGAGGAT 2278159 37 100.0 37 ..................................... TCGAGGGGTCCAAACATGACGGTTCCTTTCAGGTGGG 2278233 36 81.1 0 ......................A....-T...CT.GG | G [2278254] ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 98.1 35 GTCAGGGAGCACCACGCACCTGTAGGTGCATTGAGAC # Left flank : GCGACTCACGGCCGAGAAGGTGTCCGAGGGCTGCGACTTTCGTGATGGATGGCGCCCTCTTTCCCTGAATCGCCTTCCCGATGGAGATCTCGTCCGGGTTTGCCGGAATGGTCGGGGGATTGTGCTCGTTCCGGTCGGGGCCCGGGGTCGGGCTCATTTCGGCCCGGGTGTCCGTGTCGGGTCCGGTCGGGGTGCGGGGTGTCCTCGGCGGGTCCGGCCCGGTTGGTGCTGGAGGTGTTGTTGTGTCTGGTGGGGCGGTATAGTGAACAGGGTGTCATGTTACATGTTTGCAAGATGGTGCTCCGACACCGACTTTTCCGCATGACCTGGTTGAAAGTTGGCGCGCGGAGGGCTCTGAGGGCCGTCGGTGGCGCTTGGCGTGATTCCGCCACTATGTGCTAGTCTGAGTCCGGTGCTGGCCGGTTCGGAGGGGTGCTTCCGGGGCCGGTGGCGCTCCGGGCCCTCGAAGTGGCGTCATACCGCCACTCTCGGAGGCAGGG # Right flank : GGGCGTCTGGGTATGTCGAGTCCTCCTCATCGGGGAAGGGTTCCGGGGCGGGGTCGGTGGGGAGGGCACATTCTGCGTCCGGTTCGCCAGCCCCTGCCCGTCATCCTCCGCGAACGCGCACCTCCCATCTGCGCGTTTGACTGGAGACCTGCGCGCTCGCGGAGAACCGGGGGACTCCCGGCGGGGCCGTCCAGGCGGGCGCCGGACCCGCCGCCCACTGAATAACCTTCACTGACACAGCCGGTCCCTGAGGCGGAACGATCCGCTGCGTCGAATTCGGGCGAGGACGGTGAGGTCCTCGCCCTTCTTGCTACTCGACCGCGAATACCATCGCGAGCCGCACGGTCTCCCGGCCGCACGAGGACGACGGTCATCGAGCGGCGATCAGCGCGCCATCCGTGTCGGGTCATTAAGCCTTTCTCATCAGAAGCGGTGGCTTGGAGGCCGGAGTCGGCGCGATGACGCACGATCGTGGTGGGGCGTGTGAGGCTCCCGGGGCT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGGAGCACCACGCACCTGTAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.10,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 16 2739180-2739432 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012590.1 Actinomyces sp. oral taxon 414 strain F0588 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 2739180 37 100.0 36 ..................................... ACAATGATAGCTGCAATGATGCCGACGAGGAGCACC 2739253 37 100.0 35 ..................................... AAGACAGCGTCCGACCCATCCGTTTTTGAGGTCTC 2739325 37 100.0 34 ..................................... GCATCGGTCTCTTCGGCCTCCTCTCCGCCCGGCA 2739396 37 94.6 0 ...............A................A.... | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 98.7 35 GTCAGGGAGCACCACGCACCTGTAGGTGCATTGAGAC # Left flank : TTTTTCTGGCGGGAATACTTTCCGTTACGTCGCATTTCCATGCATGCGCGCGCACCGGAATTGACCGTCGTGAGAAGGGCGGTTCTCAGCCCGCGGAATATCCGACGATAATCTCATCCGAACCCACCGAGGCGGTCGGGAAGCGGGGCCGTCCCGGTCGGGTGCGGAGCGTCCGTGTCGGGTCCGGCCGGGGTGCGGGGCGTTCTCGGCGGGGACGGCCCGGTTGGTGCTGGAGGTGCTGTTGTGACTGGTGGGGCGGTATAGTGAACAGGGTGTCATGTACATGTTTGCAAGATGGTGCTCCGACGCCGACTTTTCCGCATGGCCTGGTTGAAAGTTGGCGCGCGGAGGGCTCTGAGGGCCGTCGGTGGCGCTTGGCGTGATTCCGCCACTATGTGCTAGTCTGAGCCCGGTGCTGACCGGTCCGCAGGGGTGCTCCCGGGGCCGGTGGCGCTCCGAGCCCTCGAAGTGGCGTCATACCGCCACTCCCGAGAGCAGGG # Right flank : CGCGCGACCGACGGTGTATCCCCAGGGGTATGTGCTCGCGGGTTACCTGGCGATCTCGCGGGAACGGGAAGAAGAGGAAAACGCGGCCGACCGCCCTTCGTGCCCCCTCGGGCACTCTCGTGCCCTTCGCCCCTCGCCCTCGCCCCTCGCGCGCACCGCACTCCACTCCCCCGCGCGCCCCTCACGCCCCCAGGGCCAGGCGTGCGGCCACGCCCACCATGACGCAGCCGACGACCGCGTCCACCACCCGCCACGTCCTCGGGCTCGACAGCGGCCCCGACAGCGCCCGCGCCCCGAGCCCGAGCCCCGTGAACCACACGACGGAAGTCGCGCACGCGCCCGCCGCCGCCCACCAGCGGGTCGGGCCGAAGTTGTTCGTCACCGTGCCGAGCATGAGCACGGTGTCGAGGTAGACGTGCGGGTTGAGCCAGGTCAGCGCCAGCGTCGTGACCGCCACCGAGGCGGCCGGGCGCGCCGTCGCCTCCCCCAGCGCCCCGGGC # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGGAGCACCACGCACCTGTAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.10,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 17 2868159-2869069 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012590.1 Actinomyces sp. oral taxon 414 strain F0588 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2868159 37 100.0 36 ..................................... GCCTCCTTGTTAGTAGTCATCGTGGCCCACGTGGCC 2868232 37 100.0 36 ..................................... CAAAGGGGACAAGAAGCAGGTTGATGAGAACGAACG 2868305 37 100.0 35 ..................................... ACTGAGCAAGCTAGACACAATCAGCGACTTGTCCT 2868377 37 100.0 37 ..................................... GTAAGCGACCATGAAGGTCGCAATTCCGACAACGTGG 2868451 37 100.0 34 ..................................... AATGCGCTGATCGTCGCCCAGGGGGCGACGAAGG 2868522 37 100.0 36 ..................................... TCTGCCAAGTCGGCCTTGTGTCTGGCCTGGGTAGCC 2868595 37 100.0 35 ..................................... GCCTCGGCGGCCAGACAGGCGGCGATGAAATTGCC 2868667 37 100.0 35 ..................................... TGTGTAGGACAGAAGTCCCGACACCACGACAGTGT 2868739 37 100.0 38 ..................................... TGTGTCAGCCCACTCCTTCAGGACTCGAAACGCCTCCC 2868814 37 100.0 35 ..................................... ATCGCATCAAGAGCGACCGCGCGGTACCGCTCCGT 2868886 37 100.0 36 ..................................... CTGGTGCAGACCACCGCCGTGATAATCCACCACATG 2868959 37 100.0 37 ..................................... GCCGTTATCTTTTTCTGGGAGCAGCTGCCAAGCTGCT 2869033 37 97.3 0 ...................................C. | ========== ====== ====== ====== ===================================== ====================================== ================== 13 37 99.8 36 GTCAGGGAGCACCACGCACCTGTAGGTGCATTGAGAC # Left flank : ACTATCGGGGGCGCTGAGGGCGCTGAGGATCGGTGCCGAACCAAAAACGAACCATCATCAACCCGGTCGCATAACCAACTGGATTGTTGCGGCCTCTTGGATCGTTACGACCTCTTTGCTATATATCGTCACCGCAGCGCTCGACCTTCTTGATTCGGCCGGCCCGGGTGTCCGTGTCGGGTCCGGCCGGGGTGCGGGGCGGTCTCGGCGGGGTCGACCCGGTTGGTGCTGGAGGTGTTGTTGTGGCTGGTGGGGCGGTATAGTGAACAGGGTGTCATGTTACATGTTTGCAAGATGGTGCTCCGACACCGACTTTTCCGCATGACCTGGTTGGAAGTTGGCGCGCGGAGGGCTCTGAGGGCCGTCGGTGGCGCTTGGCGTGATTGCGCCACTATGTGCTAGTCTGGACCTGGTGCTGGCCGGTCCGCAGGGGTGCTCCCGGGGCCGGTGGCGCTCCGGGCCCTCGAAGTGGCGTCATACCGCCACTCCCGAGAGCAGGG # Right flank : CTTTCTCACCAGGAAGGCCCCCGGACTGGCCAGGATCGACGTGATGGCGCGGGAAGGTCCGAGGCAGTGCAGGGCGGTGCGTCCCCCATGCGCGCCACACCCACTCCGCGCCCATCCTTCCCGCACCGTCGCGCCGATCCCCAGCCCTGAGCCGCCAGTTCTGGTGAGAAAGGCTCATTGAGACCACCTTTCCGGGTCAAGTCTTTTGGTGTGGTGTTCTTTCGGTCAGGTGGTGATGGGGGGCAGGGCGGCGCGGCCGCCGTCGCCGCCGGTGTTGTCGGTGTGGAGCATGTCGGTCAGGCGCTGCAGGGAGGTCTGGGAGAGGTATCGGCGTTCTCCGTACTGCCACTCCTCGTGCTGTTCGAGCAGGACGGATCCGATCAGGCGGGTGACGGAGTCGCTGTCGGGGAAGACCTGGACGACGTCTGCGCGGCGCTTGATCTCGCGGTTGAGGCGCTCGATGGGGTTGTTGGACCAGATCTTGGTCCAGTGCTCGCGGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGGAGCACCACGCACCTGTAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.10,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 18 2877147-2876530 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012590.1 Actinomyces sp. oral taxon 414 strain F0588 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2877146 37 100.0 34 ..................................... TTCATTTCGGTTCCTCTCGGTCGCCGTGTTCCTC 2877075 37 100.0 34 ..................................... CACCGGAGCGCCCGGCGCGTATGACATACATGCC 2877004 37 100.0 38 ..................................... TTCAGCCCGATAGACTGGATCAAATTCAACTCGTGGAC 2876929 37 100.0 36 ..................................... CCTTTCGGGCGATGAAGAACCTCTCACGCTTGACGT 2876856 37 100.0 35 ..................................... ATGGGCGCGAGGATGTAGAGAGAGACGAGTGCAAT 2876784 37 100.0 35 ..................................... ATGGGCGCGAGGATGTAGAGAGAGACGAGTGCAAT 2876712 37 100.0 35 ..................................... AGCCTCACTGGCGGCCGAGATGAATGCCCGCTCAA 2876640 37 100.0 37 ..................................... GGGGTCGGGCGGGGGAATGGGTCTACTCACGGCACAC 2876566 37 86.5 0 ....A.............T.......C.T......C. | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 98.5 36 GTCAGGGAGCACCACGCACCTGTAGGTGCATTGAGAC # Left flank : GTCCTGAAGGGGTTGCGGCTCGCGGCCGAGGAGGTGTCCGAGGGCTGCGACTTTCGTGCTGGACGGCAGCCTCTTCCCCTGAATAACCTTCCCGATGGGGATCGCGTTCGGATTCGCTGGACCGATCGGGGAACGGGGCAATTCCGGTCGGGGCGGGGGTGGTCGCGTCGGACTCGGTCGGGTGCGGGGCATCCTCGGCGGGGTCGGCCGGGGCCACCGAGGCCGGTGCTGGAGGTGCTGTTGTGGTCAGTGGGGCGGTATAGCGAACAAGGTGTCATGTTACACGTTTGCTGCAAGGCCCTCCAAGGCCGACCTTTCCGCATGACCTGGTTGAAAGTTGGCGCGCGGAGGGCTCTGGGGGCCGTCGGTGGCGCTTGGCGTGATTCCGCCATTATGTGCTACTCTGGGCTCGGTGCTGGCCGGTCCGGAGGGGTGCTCCCGGGGCCGGTGGCGCTCCGGGCCCTCGAAGTGGCGTCATACCGCCGCTCCCGAGGGCAGGG # Right flank : TTCCTTGTTTCGTATTCGCTACAGATCGTGCGACTCCCACGTAGTCTGGCCGGAAGGAATCCCATTCAGGGGGAACGCCGATAAAGACATCCCCGAAGGCGCCCAATGTCCCTCGTGCCTGAAACAAGGTGTTTGCGATACGTGATCCGACTCGTCGCCACCTATGATCATCAGCGTTCAGATCACCTTGACTTCCTTATGACTATCTGCCGTCCTACACTGTTCTCATGACATGGCACCACGCCTACAACGGGATCCCGGCGATCCGCGAGCCGTGCGATGGCAACGGCCCGAACTTGTCCCTCTACAAGGACGACGTCCCCTCCGGGCACGACCATCTGGCGGCTGGCCGCCTGTCCGGGGAGCTCGCCGTCAAGATCGTGGCCGCCTCCCCGACGATCCCCGGACAGCAGACCGCCGACGGCAGGGTCGTCGTCGCCTCCCGCAGCGGCGACCCGGAAGGCGCCCGGACCTGGGAGGACGCCACGATCCCGGTCACC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGGAGCACCACGCACCTGTAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 19 3024780-3025036 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012590.1 Actinomyces sp. oral taxon 414 strain F0588 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3024780 37 100.0 35 ..................................... GCCCTCGCCTGGCTGATCAACGGGGCCGTCGTGAT 3024852 37 100.0 37 ..................................... CGCTCAATCTCGACAATACCTCATGGTCCGCCACAGG 3024926 37 100.0 37 ..................................... TACCAAGGTGGCCGGCGGCGAAAAGCTTTCGGACTTC 3025000 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 100.0 37 GTCTCAATGCACCTACAGGTGCGTGGTGCTCCCTGAC # Left flank : GCCCCGGCCGGCCCCACCGCCGGAACCTCCCCCGCCTCCACGCCCACAGCCGGGTACAACCCGGTACCATTCACCACGAGGGTGCCCCTCCCCTGGTCGTGCACGGACATCAGCAATCCGCATTATCCCAGGACGAGGAGCACCCTCACCCCACCCCCGGCACCCCAAACCACGAAAAATCGAGGTTAAGTGACGATCTCGCGGGTTAAGTGACGTGCTCGCGGGTTAAGTGACGTGCTCGCGAGCCGGGGCGCGCACGACATGCGAGACGCCGTCCCACCATGCGGGACGACTGGCGGGGGCGGGGGCACCAGAACCTCTCCCGCCGCCGCCCGACCCGCCGATCCCGCCGCGCCCGACCCCCCGACGCACCCGGAGGCGACCCGAGCAGACCGCCACCACGACCTTCACGCTCCACGCCTTCAAAACCACCCCTGAACAACATTCCAGGTGCGTGGTGCTCCCTGACTTCGAGAGGAGCGACAAGACAGGAACTGTCT # Right flank : CCCCTGCCCTCGGGAGCGGCGGTATGACGCCACTTCGAGGGCCCGGAGCGCCACCGGCCCCGGGAGCACCCCTCCGGACCGGCCAGCACCGGGCCCAGAGTAGCACATAGTGGCGGAATCACGCCAAGCGCCACCGACGGCCCCCAGAGCCCTCCGCGCGCCGACTTCCAACCAGGTCATGCCGAAAGGTCGGCGTTGAAACGCCTTACTGCAAACGTGCAACATGACACCCTGTTCACTATACCGTCCCACCAGCCACAGCAGCACCTCCAGCATCAGCCGGCCCGGCCTTGTTCGAGAATGTCCCGTCCCCGACCAAACCTAACGCGACTCCCTCGCCCGACCGGGATGAACACGCTCTCCGACCGATTCGGCGGCGGACCCGGATAACACCTCCCCCGGATATTCCACGCACCGGGAATCGCCTCCCGCGCGCCGGCGAGGCGGAAAAGGTGGCTCCTGCGTACTTTTAAGGGCGCGCGGAGGGTCAGGACGTTCGA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAATGCACCTACAGGTGCGTGGTGCTCCCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 20 3556909-3557242 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012590.1 Actinomyces sp. oral taxon 414 strain F0588 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3556909 29 100.0 32 ............................. GCCTACCCGGCTGTCAAGGCCCTCATCGACGG 3556970 29 100.0 32 ............................. CCCGGCCATCACCCGATGCGCGCCTGACCCGG 3557031 29 100.0 32 ............................. ATCTGGCGAACCCTCCCCGAGGGGGAGGAGAT 3557092 29 100.0 32 ............................. CAGGTCCGTGAGGCTTTGGTGGCGGCCATCGA 3557153 29 100.0 32 ............................. GGCTTCGCCACGGTGGAGATCGCCCAGGCCCT 3557214 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GCCGGCCCCGCGTGCGCGGGGGTAGAGGC # Left flank : GCTGCCGCTGTTCGGGAGCGTCGGGCGGCGCGGGCTGCCGGTGCTTCGAGGAATTGTGGTGCGGGCGGACTCGGTGCCGGATGAGGTCGCTTTTGCCGTGCACGGCGGCGTGGTGACGGTTCGACGGGCGGAGCTGCGGGCGTTGACGTCGCTGCCCAGAGTGGTGCGCGCGGCAACGATGCCGTCCGAGACGTGGACGTCGGTCGTGCCCGTCGAGACGAGGGCGGAGGCCATGGACGCCCGGCTCCAGGCGCTGGCGGAGAACCTGAGCGCGCAGCTGGTCCGGGCGGAGCGCCATGCGCGGGCGCGGGCGTCGGTTGGCCTTGATGTCTGCGAACCGAGCAGCGCCACTCATCTCACCGTCGTCTTCGATCGGGCGGTTGCAGGCCCGGTCATCCTGGACGGCGTGTGGCTTGTGCCGGAGAGGGCCGACGGATTGGCTGTCAACGGGAGGCGGAGCGCGCGATGACGGATGCCGTAGTATTCCAACGGCGCTCAAG # Right flank : CTGGGTCAAGTCCCTTGGTGTGGTGTTCTTTCGGTCAGGTGGTGATGACGGCGGTCCCGGCTGGAGCGGCCTGCGAAGTGTTGCAGCAGGCCGGACCCGGCCGGTCGGTCTCGGACAGGACTCCGGGGGTATCGGTCTTGGAGACCGGCTCGACCGGACGAGCGACGACCATCTGCTCGAAAGCCCGATCACCCCGACCGCCGTCCCGGTCCCGGGCGCGTTCGGGCTGTATGAGTGACCTCGATCTGCGGGGGGCGATCGGCACGGCGATCTTCGTGGCGAACCCGTGCCACCCAGCGCATCACCGTCGTCGTTGAGCGTCCAGGTGAGGGGCGTGCGGGACGACGGCGCGCGAGGGCACGTGCGCCGTCGTCGGCAAGGCCCTGTGACGGCGTGACGGTCTGTCAGCGCAGGAGGGCCGTCAGCTCGCGGCGAGTGCGGAACAGCTTGATCTGAGTGGGGATGCCGATCGCGAAGACGCCGGCGATGACCGCAAGGCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGGCCCCGCGTGCGCGGGGGTAGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //