Array 1 3627-5547 **** Predicted by CRISPRDetect 2.4 *** >NZ_MINY01000031.1 Corynebacterium diphtheriae strain ST378-KZN-2015-45789 45789_contig_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3627 29 96.6 32 ............................G TCGATCCTTTACCTGCTGCCACGCCGACGACA 3688 29 96.6 32 ............................G AGATGAAAGACTGGACGAACGCCCAGCTAAAA 3749 29 96.6 32 ............................G TCGCCTGCGGAAACCACACCCTCAAAGCGCTA 3810 29 96.6 32 ............................G CACTACTTTCCCATGGTCGTAAAGGTATGTTG 3871 29 100.0 32 ............................. CATGATCACACTCACAACCACACTCACCCTCA 3932 29 100.0 32 ............................. CTGTCATCGGATTTTTTGAGTTTTACCAACCG 3993 29 100.0 32 ............................. GTCTCGCGCCGCGACGCTAAAGCGGTGGGCCG 4054 29 100.0 32 ............................. CATTCTTAGCGCTTGGCGTCGTGCGAGCTGGT 4115 29 100.0 32 ............................. ACGCGCCCTACGTCGGCTAATTCCTCAGCAGT 4176 29 100.0 32 ............................. GCTTATTAGGGCTTCCCCGTCAACAACGGACA 4237 29 96.6 32 ............................G ATTCGACTTCCACCGATCCGATGTTTGCTCAC 4298 29 96.6 32 ............................T CCTCTGCGATTCGTGTGCGTATGGAAACCCTG 4359 29 100.0 32 ............................. GTTGGCGAGGGCACCAGATACCAATGTCAAGC 4420 29 100.0 32 ............................. TCGTCCACAACGGCTAGGCTCTCGGTCTCGGT 4481 28 93.1 32 .....-......................T CATGTGAAGGTGATGGTCGAATGAGTGCCGGT 4541 29 100.0 32 ............................. CACGGCGTAGTTGGTAGGGGATGGTTCTTCAT 4602 29 100.0 32 ............................. ACGAGCGGTGGTCTAGCGTTCCTCCCCGCAGT 4663 29 100.0 32 ............................. CAGGTAAATAGTCGAGTTATCCGGATTCCTCG 4724 29 96.6 33 ............................A CAAGGCCACTAGACGCGTATTGCCACAGTTCGA 4786 29 96.6 32 ............................G GAGACCTGATGGCTAAAGCTACTGTGACTTTT 4847 29 100.0 32 ............................. ATCTACACCACACGCCGCACACACGAAATGCA 4908 29 96.6 32 ............................G AAGCCGCGACGAAAAAACAATAAATAGAGCAC 4969 29 96.6 32 ............................G TTTTACGGATGATTCCGAGCGTCCCAGTCGTG 5030 29 100.0 32 ............................. TCTCCCCAGGTCAGATAGAGGCCATCAGGGAG 5091 29 96.6 33 ............................G CAGGCCCCCACGTCAACCCCTGCCACGTCGAAG 5153 29 100.0 32 ............................. TGTGACGTCGCGCAATGGCAAGGTCTGGTACA 5214 29 96.6 32 ............................G TTGGCTGGTGCATCTTCGAATGGGATGTAGTT 5275 29 96.6 32 ............................G CGTCGGATGTGTGCGAGGGCTTCTTTTTTGGT 5336 29 100.0 32 ............................. ACAGGCGGTTGCGCTGATTGGACTAGGAATCT 5397 29 100.0 32 ............................. CTCAAGGCCAGAGCTGGAAAAGCCGACGCCGG 5458 29 100.0 32 ............................. AGATCGTTAAACCAATCTGCTTGCTTTGCGGA 5519 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.4 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGTCTGCCAGCCCAAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGTTTTTCGACGAAAGAGGAGAGGCTCGTTTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAGAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAGGACTAAGCAAATTTGGGTGAATGGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGGCTCTAAACGTGCAGCTTGATAAGT # Right flank : CAGGGACTTTGAGAACTGGACCGCCGTGATTCCTTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGGATCTGTGTTTTCATTCAGAGAAATCAGTAAATGATGGGTCTACTAAAAAATTTTGAAAAAATTAACTTTTAATATCTATAAGGTGTATTCTGTAGAGAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGGTGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCAGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGGTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCAGCTTGCTCGAAAAGGGAAAGATCAG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //