Array 1 959926-961663 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034831.1 Salmonella sp. SSDFZ69 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 959926 29 100.0 32 ............................. TTTTTTTCGACGTCCCGGAGAGTTATTTGCGG 959987 29 100.0 32 ............................. GCCAGGCCATCCGGGCCCCCTGCGGTCATTGA 960048 29 100.0 32 ............................. ATGGGATCGTGACTCACTGGCATCTTATGGAC 960109 29 100.0 32 ............................. GAAAAAATGTCTGCCAGTTTTAAAGTGGCTGG 960170 29 100.0 32 ............................. GTTATTGATAAATCTCCACGGCACCAACCAGA 960231 29 100.0 32 ............................. ACCGGCTGCGCGATCGCCCTGGGTGAATTCGT 960292 29 100.0 32 ............................. AGATTGTGAGACAGCTTGATCCTGGTGCTCGT 960353 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 960414 29 100.0 32 ............................. CTACCACCCATCAGTACGCCACGCTGATAAAA 960475 29 96.6 32 ............................T GAGATTTACGCGCTCGTTGAGCTGCTGCACGT 960536 29 100.0 32 ............................. TGTTTCCCGATCACGTTGCTGATACACCAGGT 960597 29 100.0 32 ............................. CGTAAAAATCGGGCTGATGGGCGCCAGCCACA 960658 29 100.0 32 ............................. GGGATCCACTGCGCGTGGCGTCCTGGTACACA 960719 29 100.0 32 ............................. CGTAGCTATACTGATAATTCATCAGCACAGAC 960780 29 100.0 32 ............................. GGCACTCTTCAGGAAAGCAGCGCCTTCAGGGT 960841 29 100.0 32 ............................. GTGGTGTCCGGTCTGTCGTTCACCCCCGCAGT 960902 29 100.0 34 ............................. GAAGAGCGTGATCTGCACTACTCGTCTGTGCTGC 960965 29 100.0 32 ............................. TCGAATTGTTCACGTCTGGTCATATAATTCAC 961026 29 100.0 32 ............................. CAGTGCACCAATAGCATTACGATTCTGATAAC 961087 29 100.0 32 ............................. CTCGTAACAACGCCGCCACCCGGTGAATTTTA 961148 29 100.0 32 ............................. ATTCTGTCTCTTTTGTGCGGAGCGCCGACGCC 961209 29 100.0 32 ............................. CGTTGTTAACGGCAGCCTTATCTGCTTTACCA 961270 29 100.0 32 ............................. CAGTTATTTGACAATTGGTACTGGCATTAAAT 961331 29 100.0 32 ............................. TTGCTTATTAATGAGTTTGCGACGGTGTTAAT 961392 29 100.0 32 ............................. AGGCTTTGACAATGGCCTGGTTAAGTTGGAGT 961453 29 100.0 32 ............................. TAATTACGTTTTTTCAACGTCTCGATAATCGC 961514 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 961575 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 961636 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================== ================== 29 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATTCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGATTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 978246-979800 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034831.1 Salmonella sp. SSDFZ69 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 978246 29 100.0 32 ............................. GCAACGTCGTCATTGATGAAGCCGCGTTCCAC 978307 29 100.0 32 ............................. CGTGTTTTCGCCCCGGAGACAATACCAAAATA 978368 29 100.0 32 ............................. GCACCGCATGACATGCGATGAATACCGTGATA 978429 29 100.0 32 ............................. AGAAAAACCTTGATAAAACCTTTCCTAAAACG 978490 29 100.0 32 ............................. GATGACCCGGAGGCTTACGAGGGTTGCGCGGC 978551 29 100.0 32 ............................. ATATTACCGGGACCGGATTTGACGGTACCAGC 978612 29 100.0 32 ............................. TGACTGCGCGGACCGGGCCAGCGCGTCGATTT 978673 29 100.0 32 ............................. GGTAATTATGCCATTGTCGTCAGGGGTAAAAC 978734 29 100.0 32 ............................. CCTCTTTTAGTCTCGGCCATGAATCGTTATTA 978795 29 100.0 32 ............................. TCACTGATATTAAATAAATACTATATTTTACA 978856 29 100.0 32 ............................. CAATGAATTTGCTCCGGAAATAGATAAAGCGC 978917 29 100.0 32 ............................. GGCGCACTGGCGTATAACCTCTTGCGTGCCGT 978978 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 979039 29 100.0 32 ............................. ATTGTATATCTTGTTGAGTTTGAAGGGTGAAA 979100 29 100.0 32 ............................. ATGGCTGGGTAGTGGAGTAATCATTATGTGCG 979161 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 979222 29 100.0 32 ............................. CCTGACGCCAAAGGGAACGTGAAAGTGTCTAC 979283 29 100.0 32 ............................. TTTAATCGCAGTTTTAAATGTTGCCTGCGCAT 979344 29 100.0 32 ............................. GGCTGGCATCAGATCTCTAAAGAATATGACAA 979405 29 100.0 32 ............................. CCTTCGATTTAACAGGCTGGACAATCACGACA 979466 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 979527 29 100.0 32 ............................. ATCGCGCAGAACTGGCGTAATAGTCAGGAAGC 979588 29 100.0 32 ............................. CCGCCCAGAGAGGTCGCCACCTATACGGCAGT 979649 29 100.0 32 ............................. TTGGGGTTAATTGGGCAAATTGAATCAGGAAC 979710 29 100.0 32 ............................. TTGGGTTAATCCCACTGCCGGAAAGCTCGTAA 979771 29 96.6 0 ............T................ | A [979798] ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //