Array 1 971501-972922 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021104.1 Limosilactobacillus fermentum strain FTDC 8312 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 971501 36 100.0 30 .................................... AGATAATTATGGGTTATAAAGCAACTCCTC 971567 36 100.0 30 .................................... ATCTTTACGGTTTCAGCATCACCATCTTCT 971633 36 100.0 30 .................................... AACGGACTGATGCAATGTTAGACGCCCTTT 971699 36 100.0 30 .................................... AAAATATACTCAATTTGATACCCAGGGTGT 971765 36 100.0 30 .................................... TTAATGATGCGCTGAAAGGCATTGCCAGTC 971831 36 100.0 30 .................................... ACAACTATTTCAATCTATCGAAATTATTAC 971897 36 100.0 30 .................................... GAGTAACAGTGGCTTTACGCGTGAGAGTAC 971963 36 100.0 30 .................................... ACCAGGTTTTGCGTAACTTGATTGACGCCA 972029 36 100.0 30 .................................... AAGTGGACGGTCAGCTCTACACCATCAGAG 972095 36 100.0 30 .................................... ATCGACAACGTGATTGGGGACCCAATTGTC 972161 36 100.0 30 .................................... CATTACCTTTACCTTTCTTGTTGTATACCG 972227 36 100.0 30 .................................... CCGATCGGTAGAAGTCTTTGGGAACTACGC 972293 36 100.0 30 .................................... AGAATACGTCGAGCAACACAAGAAAGACAA 972359 36 100.0 30 .................................... AACTGGACGAGTGCGGATTTTTTTGTTGCA 972425 36 100.0 30 .................................... GGGAACGAAGCGACTTCCGCGCGATCGAAG 972491 36 100.0 30 .................................... AATTGACATCCGGCTTTTTGAGGCCAGACA 972557 36 97.2 30 ...............................G.... AGGCAAAGCCGTCAGAGTGACGACAAATCT 972623 36 97.2 30 ...............................G.... AGGCAAAGCCGTCAGAGTGACGACAAATCT 972689 36 100.0 30 .................................... CTATCAAAGCTGAACAGTTCGATGGTTCTC 972755 36 100.0 30 .................................... TCGTCAGTGCCACGCATGACCACTTCATAG 972821 36 100.0 30 .................................... TTGAGCTTAGCAATTGACGCGGTAAGCTGT 972887 36 86.1 0 ............................TA..A.TA | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.1 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAACTTGATAGTTACCAAACGTCACTCGATAAGATGATTGTCAAAAATCTTAGTATCGAGAAGCGAGATCGGATGAATAACCTTGCTCGAGAGGTGTTCTCAGAGATGCAAGATTCTTTGTTCGAATTCGACTTACCGTTGGAGGCGCGGTATGACGAGAGCCTCTTGAGATTATACAAATATGCGAAAATTAAATATTTGACGCAAGTAATAAGGCAACCTTATGGTATAATTGAAACCGATCTAAAATTACATCTCGAATTAAAAGACTGTCAGGTTCTTGGGTATTGTAATGTCGCTAATTACTTATTGCCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTGGAATTCTCAGAAAAGAGAGAAACTCTACAACAACTCAAACAGGATATTTACCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGACCGTTAGTTTTTGATGAGAAAACAACG # Right flank : ATAGACTAAGGGCGTTGCTGTTTTTAGCAATGCCTTTTTTAGAAGTGATGAGGGAAAGGTAAATGTTTTCACGTTGGTAATCTGACGGGAACTTTAGTGGGCGATGTGCTAGGATAGGGCCAAAATGATTGGAAGTGTTTGCCATGCAAATTGATCCCGAACGGATTCGCCCCGAACTGCGCCGAATCGGCAAGGTGGGGTACGCAATCAACCTGATGGCCAGCCCGCACGCCTGCAACGAATGGGACGAATAACGGCGAAGGCGAAAATGCCCATTCACTCGCGGCGGGTGATCAAACAATACGTTTGGATTGAACGCCCTGACCATAGCAAGCTTCGGCTGGCTATTTTCCGGGCCAAGCAAGTTGCTACCAAGCGCCCGGCCACCGGGATCCTCTGGTTGCACGGGGGAGGCTACGCCTTGGAAACCGCCGAAAATGCCTTGGTTTATGCTGAACAGTTGGTGGCTGACGGACGGTCCGTGATGGTGGCGCCGGATT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1477294-1475984 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021104.1 Limosilactobacillus fermentum strain FTDC 8312 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1477293 29 96.6 32 ............................C TAAATGGCCGTATCTGTCGATACCAATTCTGA 1477232 29 96.6 32 ............................C CCAAAGGTAATGGTTGAATTGTTGCCTACCTG 1477171 29 96.6 32 ............................C TTTAACTACGATTTTGCAAAAGAAAAAGCCCT 1477110 29 100.0 32 ............................. TTGGTTATCATCGATTGCCACTCCAGAAGTTG 1477049 29 100.0 32 ............................. AGATGCCCGGTGACACTATTAACCGTTAGAGT 1476988 29 96.6 33 ............................C CTCGTCATTGCCGAAGGTCGTACCTGGCTTGAG 1476926 29 96.6 32 ............................C AGCACTCGTCAACTCACAAGATCAGACGATTG 1476865 29 100.0 32 ............................. ATACTCAAACTTCTTCGTTCCGCCGAAATACG 1476804 29 100.0 32 ............................. TAGACAGACGGTTTTATCCGTTAAGTCAGTTT 1476743 29 100.0 32 ............................. TCCGATCATCGGAGCTTGGCTTTCAAAACAAC 1476682 29 96.6 32 ............................C GACTTTACCGTCGATGGAGCAGGCGGTTTTAA 1476621 29 100.0 32 ............................. GAGCGAGTAATTTTAAGAGCTTTCGCAACATC 1476560 29 100.0 32 ............................. GAAGAAGTCAACACAGATTATCGACTTGTCAA 1476499 29 100.0 32 ............................. AGCCAGATAGACAATCCGGCCAGCGTCACCCT 1476438 29 100.0 32 ............................. AGTAAGAGCATGTATCCAGTTGCCTTCCAGAT 1476377 29 96.6 32 ............................C AAGTGCCATAATCGCCGTTTTACCAATCTTTT 1476316 29 100.0 32 ............................. TACACGAATCAAGGTAAGAATGCACCACAAGG 1476255 29 100.0 32 ............................. TAGGGATGCGTACATTGGCCAGCTTTGGAAAA 1476194 29 100.0 32 ............................. ACATACCCAGTTTATCCAGTTGGCCGGTTTCC 1476133 29 89.7 31 .............G.......A......C GACATGTGGAAGAGGCTGATCGCCATCCCCG 1476073 29 82.8 31 .......T....A.....A..A...G... GCTTGCCGGGATCCCTGTCTCCGTGTGCCTC 1476013 29 79.3 0 ...T.......TC.A........A....C | T [1476008] ========== ====== ====== ====== ============================= ================================= ================== 22 29 96.7 32 GTGCTCCCCATGTATATGGGGGTGATCCT # Left flank : GCGACTGACGAAATAATATCGATAGGGGCAGTTAAGTCAACCAAGGGGAGAGGGCTTGAACGATTTTATCGGATCGTCAGAACTAGCAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGAAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGCAATAGTGGTTGGTTATAATGTTGCATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAGGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCAGGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAATGGTTTTTGAAGATTTGAAAATCGCTTGGTTACAGGGATCTTTTAAT # Right flank : TGCGCACTTCAGTCGCCAGAGGGACTTTAAAGTGCTCATGGGTGATCGCTAAGAAGTTAGCTCGAGCGTATACAACGAAAAAACAGGCAATTAATTTTGTCAGCGACATTTTACGTCCCTCGGGTGCGATAGACTAACTTTAGAGGGTACGTCGGAGCGGTGCCTTTGCCAAAGTCAGGGTCAAAATAGTTAAACGCAGTTCTTTTTCCGTATCTAACCATGAAGAAACCTTTTTAAAGGGAGGATGGTTAGATGCGCAAGAAAGTGCAACAGATTGGCAATCAACAGCGGCATCGGTTTCGGGCGAAATTTTGCCGACTAGGGTACAAGGTGAGCTACGGCCACTTCAAGCCAACGCTTTTACTGACCGAGGTGGAACTTATTGATGATATGGAAAAACCGCAAGTGGTGACTTCACACTTATGGTTTAACTACACGACGGGGTTTCAGCGCCTGGGTCAGTTACAACCGGGTGACGTCATTTTGTTTAACGCCAGGGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //