Array 1 33017-29897 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADILL010000038.1 Delftia sp. SD083 38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 33016 32 100.0 33 ................................ GAAACGTTGCCCTCAAACCAGACGGTTTCGCCG 32951 32 100.0 34 ................................ AAGGAAACGCTGGGCATTGCCAGCCCGAGCCGCG 32885 32 100.0 32 ................................ AAATGCCGATGCCAACCAGGGCTACCAATAAG 32821 32 100.0 33 ................................ TTTTTCAGGGCGACGGATTGCTGCCCGCTTGGC 32756 32 100.0 35 ................................ AGCAACATGCTTGCGAACATGCAGCTAAAGATAAT 32689 32 100.0 33 ................................ AACCTGATCATCCCAAGAAGCCGCCTTAGGAAC 32624 32 100.0 34 ................................ CCCAGGCATCAGTGCCCAGCACCTGCTTGACGGC 32558 32 100.0 35 ................................ GGCAAGGGGCGCACGGAGATCGAGCGCATGACGCT 32491 32 100.0 33 ................................ AGTCTGGCCAGGCCCCGCTGACGGTGCTCCTGC 32426 32 100.0 34 ................................ CTGCTCAATGCGGTAGTCCTCTGGACGCCCTGGA 32360 32 100.0 35 ................................ GGTCGTCACGTCCGCAGCAAGGGTGTGTTCAAGGG 32293 32 100.0 34 ................................ GATACCAGGCCTGCCCAGCATGGGCGGCAGCTAT 32227 32 100.0 32 ................................ AATGCCATCGCGATCAGTTGAGGACTGGCCAG 32163 32 100.0 35 ................................ TTCACCGCCGGCGGTGACCTGGTGGATGGGCTGAT 32096 32 100.0 34 ................................ CAGTCGCCGATCCGCGGTGCCGGCCTGGTGCGAA 32030 32 100.0 33 ................................ GCCCTCGCATTTATCGCCCTTGCACTCGCCGTC 31965 32 100.0 33 ................................ ATGATTCCAATACAGCCGTCCCGGTGCAGCACG 31900 32 100.0 33 ................................ AACGTCCGAGATAGATACTGCTTTACCAGCTTT 31835 32 100.0 35 ................................ TATAACGCTAGCAACAGCTACGACTTGGGGCGTGG 31768 32 100.0 34 ................................ TTGTCTTGGGCTTGGAAGTGATCCAGCAACGGCT 31702 32 100.0 33 ................................ ACGCCCAGGGTCTTCTGGGCCACCTGCAGGGCC 31637 32 100.0 33 ................................ CCGCTGATCCCGCAAAGGAGGCCACCCCATGCC 31572 32 100.0 33 ................................ ACGACTCTCGCAAAAACCTCGAAGTCCATCTTC 31507 32 100.0 34 ................................ GCATCGGCCTCGACAGCGACAACGACGTGTGGGC 31441 32 100.0 32 ................................ ATCGAATTCGGCGGCAGGTGCTGGTGCAGCGG 31377 32 100.0 34 ................................ AGCCCCACCATCTCGGCGGCGCCTTTCACGACAT 31311 32 100.0 33 ................................ CATTTCCCATGCGGAATGCAGCGCCTCGCTCTG 31246 32 100.0 33 ................................ ATGCAATCTTGCCAGTCCAAGCGCTCGATGTAC 31181 32 100.0 34 ................................ ACGATCATGGGTGAGACGTCCTGCGCCCTGGACT 31115 32 100.0 33 ................................ ATCACCCTCCTCATCAGCCTGCATCTGGTGGTG 31050 32 100.0 34 ................................ AAGGTCAGGCCGTTGTCTATTCGGAACTGTCGCG 30984 32 100.0 34 ................................ ACGAACATCAGCACGGGCCGCACATCCGCGCCGC 30918 32 100.0 34 ................................ TTTCGCTCGAACACACGGGGCACGTTCGCAGTCG 30852 32 100.0 33 ................................ AGCGACTTGGTGGGCATCACGCAAAGCGCCGTC 30787 32 100.0 35 ................................ AGCATCCGACCTCCCGCATCACATCGAGCAGCGCC 30720 32 100.0 34 ................................ GACCGGGACACCGGCAAGCTGGGCAAGGAGCTGT 30654 32 100.0 33 ................................ CAACCATTCCCGAAATCAAAATCCATAATCCAG 30589 32 100.0 34 ................................ ATCCGCCGTGCCCAGGACGACACGGGCTATAGCC 30523 32 100.0 33 ................................ CGCTGCTCCAGCATCGGCAAGCTGATGACCGCG 30458 32 96.9 33 .............T.................. AAGCTCTCAGGAATGCCTTTGAGCGAATGGCTC 30393 32 96.9 34 ...........................A.... GAGTTCTCGATAGGGCAGGGGGGCTATCAGCCCA 30327 32 96.9 35 ....T........................... AGGTCATCGAACACCATGCCGGTGACGTTGATGTC 30260 32 100.0 35 ................................ ATCAATCGTGGGCGCAACCCTGAACTGGACACGCA 30193 32 100.0 35 ................................ GGCAAGTACGCCGGGATGCCCTACGGCACGCACGC 30126 32 100.0 34 ................................ ATTACTGTCGCTTTGGCCTCGTTGGGCTGGACTG 30060 32 100.0 34 ................................ ATCACTGTCGCTTTGGCCTCGTTGGGCTGGACTG 29994 32 100.0 34 ................................ TGCGAGAGGTCGCGGATCGTGCTGTACAGGTAGT 29928 32 96.9 0 ...........................T.... | ========== ====== ====== ====== ================================ =================================== ================== 48 32 99.7 34 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : GGCGTGAACTACGTGACCGGCGACTACTCGCGCGGTGTCAGCGGTTTCTGGGTGGAAAACGGCGAAATCGCCTTCCCCGTGCATGAGATCACCATCGCCGGCAATCTCAAGGACATGCTCAAGGGCATCGAGGCCGTGGGCGCAGATGCCTACAACTACGGCGCCAAGACCGTGGGCTCGATCCTGATCAACCGCATGAAGGTGGCGGGCAGCTGATTGGCTTGCGGCTGCGCATGCTGATGAAGAGCGGCCTGAAAGGCCGCTTTTTTGTGGGCACCCAGACACCGCGCGCCCCGGCTGCAGTTGGCCGCACCAGCGCGCGTTCCGCGAACCCCAAGTGACCTTTGTCCTCCCCTGACGTTCGCATTTCTGCAAGCCGTTGTTTTTGTTGAGGTATCACCGCGTCTGTCGTGGTCCTTGCCGTTTTTCCGTGACAGAGCGCGCAGGTTCGCGATGGCGAAGCTTTTTTTGCGGTGGTGCGGCTGGGTTATAAGCATGCC # Right flank : ATGGCCATCAAGCGCGAAATGACGGGTTCGGGCAATGGCTGGCAGCCCGATCCCTGCATGCCGGCAAGGCGCTGTCCTACTGGATGTGCAGGGTTTGGGAAGGCGACACGACTGATTCAAATTGTCAAATTTGTTCCTGAATGTGTTTCTTCCGTGCCAGCAGTCTGGCCGGTTTGCGTAGGTGGTTCGAGGGAGAGCGACGTGGGTTTTCTGAGGCGTATGAAGTTGGGAACCATGCTGGGCATGGGTTTTTTCGCGGTGATCGTGGTTTGCGTATGCGTGGCGGCCTTCGGCTGGATGAAGTTGCGTGACCAGGGCGAGCAGTTGCGCGTGCTGGCCGAGGACCGCATGGGCAATCTGGCCCGGCTGCAATCGCTCAAGGACAACGCCAACGCGTCGGCACGGGTGGTGCGCAATCTGGCGCTGATCACCGATCCGGCGCAGATGGCCGAGGAGAGCCGCCGGCTGGATGAGGTGGTTGCCAGGAACGGCCTGGTCAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 45612-43721 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADILL010000038.1 Delftia sp. SD083 38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================================================================================== ================== 45611 32 90.6 33 CC.C............................ ACTGCTGGGCGCGCTGGCCCTGGCCGGCTGCAG 45546 32 96.9 37 C............................... ACGCACCGAACAACGGCACACGGTGATCCACGGTGTC 45477 32 93.8 35 TG.............................. ACGCCGTCACTGGACGCCACCACGTCAAAATCACA 45410 32 100.0 35 ................................ ACCCGGGTCGTAACGCCCTGGAAGGTGAACGCCAC 45343 32 100.0 35 ................................ ATCACGCGCACCTACCAGCGCGCGGCGGCCGTGCC 45276 32 100.0 34 ................................ GGCCACGGCCAACCCATCAGCGCGAGGGCAGCAC 45210 32 100.0 33 ................................ TGGAGCCAGCGCACGCAGCGCGTAGCCTCTGCC 45145 32 100.0 34 ................................ GTGGCATCGGTCAGCCGGATGCTCAGCGAGACGC 45079 32 100.0 33 ................................ AGATCACTCTCAGCAAACAAGCCCCCTAAGAGC 45014 32 100.0 36 ................................ CTCACTGACGCCCAAGCGGTCGGCCAGCTCAGCCAG 44946 32 100.0 35 ................................ GACAGTTGACCCAGCGACTGCTGTATCCCAGACTT 44879 32 100.0 33 ................................ ATGGGACATCACTGACAAGACCAAATACGCCGG 44814 32 100.0 35 ................................ GACGCGGACTCGGGCCTGCTGTCGGTCGAAGAGGC 44747 32 96.9 35 .......................C........ AGCCCACTGCGTCCGTTTGCCGCGTAGCTGTCCCC 44680 32 96.9 34 ..........T..................... AAGCGTGGCGCAGCGGGCCTCCAGCTCCATCAGC 44614 32 100.0 34 ................................ AGGTCCATGCTGCCTCCCATGTGGTCAGGTCATG 44548 32 100.0 34 ................................ TATTCCGAAGCCGAGCGCGCAGAGATTCTGCAGC 44482 32 100.0 35 ................................ AGCTCTACATCCCGCTTGCCTGCCTCGGTCTTGGG 44415 32 100.0 34 ................................ GGCTTCACGGAGCGCCACAGGGTCACCGCACGCC 44349 32 100.0 33 ................................ AACGTACTCAAGATCCTCGACTTGTGCGAGATG 44284 32 100.0 35 ................................ GGATGCCATCCACATTCGCGCGGCGCTGCTACCTG 44217 32 100.0 35 ................................ CGCGCGAGCCTTCTTGCAAGCCGCGTCGAACTCTG 44150 32 96.9 35 .................T.............. CCAGGGGTGGCGGCTTAGGCCGTTGGCGTCATGCG 44083 32 100.0 35 ................................ GATCCCGAGCGCGCCGGCCAGCAGGACGGCATCAC 44016 32 93.8 35 ..G.......A..................... ATTGCGCGGCTCCTAATGTGTGAGTCCTATCGAAC 43949 32 96.9 33 .................T.............. GACGCACTGCTCAACTACGCGGGCTCCGTGCAC 43884 32 87.5 100 ..T......TA.T................... GACCCTGGCACCGGTGCCTACCTCAACGACATCACCTTGTGCCCCATGTGGGCGTGGATTGAGACATCTCGCACCATCTGCACGAGGTCTATGAGATCTG 43752 32 75.0 0 T.G.......A.A.....A.......G.T.T. | ========== ====== ====== ====== ================================ ==================================================================================================== ================== 28 32 97.3 37 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : CAGCCCGGCGATGAGAAATGAGGTGTGCCGATGATGGTCCTGGTGAGCTATGACGTCCGTACCCAGGACCCGGATGGTGCCCGCCGCCTGCGGCGCATCGCCAAGGCCTGCCGGGACTTCGGCCAGCGCGCGCAGTACTCCGTCTTCGAAATAGAAGTGGACGCCGCGCAATGGGTCGCCCTCAAGGCGCGGCTGATGCAAATCATCGACCCCACCCAGGACAGCCTCAGGTTCTACTACCTGGGCCAACACTGGCGCAGCAAGGTCGAACACATCGGCGCAAAGCCCGTGCTGGACCTCGACGCCCCCCTCGTCTTCTGAACCTCCGCGCGAACCCCAAGTGACCGCCGCCTGCCCTTGAGGTTCGCGGCCGCGCAAGCTGTTGTTTTCAAAAGGGGGTGGGCGAGCGAATGGCTGAACGCCGATCCCGCGGCATGACAGTGCCGCCTGGTTCGCGGAAGCCTGGCTTTTTTCATAGCGGTGAAATTGCTCTATAAGTA # Right flank : CCCCGTTTGCACTGCAGCCTCGTGTGGTGAAGCATGGGGAACTTGGGAGTTTGTGGCGGCCATGCCCCATCCCCGAATGTCGCTCGGCCCCCCTTCCAGGGGAAAACACCGGGGCGCCCGCGCCGCAAATGCATAGGTCTGCGCATGAATCGTTCAGGCCCGGCGCCATCCCTGCGGAGAATTCATGAAAGCAGCCTGCAGGGCATCGCAACCACGGGACTGCATGCGCCCGCAAGAACAACAAGCACAAGAAAAAGAAAAAGGGCTGGAGACCGGTTTCAAGCTGCTCCCCATGGCAGCCGTGCTGCGGCCATGGGGATTTTCGCCAATCGGCAATGTCAAGGAGGAGAGGGAGATGAATAAACGCATGATCCGCAGCGCTGGCCTGGCCGCGCTGGCGCTGGGCACGGCCCTGGCGGCCCAGGCCCAGAGTTCGGTCACGCTCTATGGGCGTGTGGTCGCGGGGGTGGACTACCAGAGCAATGTGTACGACCCGGCCA # Questionable array : NO Score: 8.92 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //