Array 1 286218-285579 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMS010000002.1 Vibrio metschnikovii strain M19C.6 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 286217 28 100.0 33 ............................ CATCGAGAAAGAAAGTAGATTTTGGCCCGTTAA 286156 28 100.0 33 ............................ TGCTGAACGTTCCTTTTTATCGTCAAGCATTTT 286095 28 100.0 33 ............................ TACGGAAAGTTCGTAAACTTTCTTAATTTAATC 286034 28 100.0 33 ............................ TTTAGGTTTAGGGCGGAATACTCCGCCCATTGA 285973 28 100.0 33 ............................ CTTGATTTGTTGCGGCGATTTGACCAGATGAAG 285912 28 100.0 33 ............................ TATAAGAAGTGTTAAACATGTATTGATTGCAGT 285851 28 100.0 33 ............................ CCGTGGGTTTATCAGGTAAGCGATAGAGACGGG 285790 28 100.0 34 ............................ CACTGTGCATTCCCAGCCACTGAGAGAGTAGGTA 285728 28 100.0 33 ............................ CACAAAAGTAGCCCCTTTGGTAACTTCCGTCTT 285667 28 100.0 33 ............................ TACACACCGAATGATTATCTCATCGGTACTCCC 285606 28 96.4 0 ...........................T | ========== ====== ====== ====== ============================ ================================== ================== 11 28 99.7 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : CCGTACAAGCTAAAAAGAAAACACGCTTTATCACCGCCGCTGATTTGATGTTGCAACTATCGACCGCTAAGCGACAAAACAAGCTGAAGCAATACCTTTCTCGCTCTGTGATGGCTCCAAGGTTATTGATCATTGATGAAATCGGTTACCTGCCATTTGGAAGGGAAGAAGCGAACCTATTTTTTAATGTAATCGCTAAGCGCTATGAGTATGGCAGTATTATTTTGACCAGCAATTTATCGTTTGGCCAATGGCCTAGCGCATTTGCCGATGATGCGACATTAACGGCAGCGATGTTAGATCGACTACTTCATCACTCCCATGTTTTGCAGTTAAGTGGTGATAGTTATCGATTGAAAGATAAACGACGTTCAGGAGCAATACCTGAGTAAAAGAGTGGATCAATTTTGATTGATCGTTTTTAAGCTAAAAGTGGATCAGTTTTCGGTGATCGTTGACAGTGTTTCCGGAACCCGTCTAGAATCTAGACGAACTAACAG # Right flank : CTTTCTTCGGCGTTCCTACTTACTTTTATCGCTGTCTTCTGTCACCGATTATGCAAAACTGATCCACTTAATACTCTCAGTCCGCATGGATTCCCGCCTGCGCGGGGATGACGGTTTGGCTATTGTATGGGTGGTCAATTCGATACTCATCTTGCCAGGCTGTGCCTGTCATAGCTCTTCGTTAATCGGGGCAATACAATATTTTGCGCAGATTCGACAAGAAAATGTGAGTAAAGTAACAATATGAGTCTTTCATTCATTAGACACTATTAACCATAAACTTTGTGATTGGTTGAATCTATGAAAACGTTAACTTTACCTTGTCAGCGAGACGTTGAAATAAACGCCGCAGAGCTAAACGTCACCCTTAAAGGTCATGAGCTGCATTTTTCTTATCAAGGTGACCCATCAAAACCGATCAATGATCGTTTTATTCTTGCTCGTAGTTTACTCGAAATGGATGCTAATGCGCTTGTTGTTGGCGATGGCTTTCAAATGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3716-124 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMS010000019.1 Vibrio metschnikovii strain M19C.6 Scaffold19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 3715 32 100.0 33 ................................ TTGAGCCAAACCAATGATAGCGGCAAATGCGTA 3650 32 100.0 34 ................................ TAGCTCATTGTATAAAGGTTTTTCAGGATCATCT 3584 32 100.0 35 ................................ TGTGAAGCTGGTCACGGTATTTAATTTGCGTTATA 3517 32 100.0 35 ................................ TAGTTTTGACTTAACAAGCAATAGCTCCGCCTCAA 3450 32 100.0 35 ................................ ATATAAATCTAATAACGAGTTAACTAAACGACCAT 3383 32 100.0 34 ................................ AAAGTATGACCAACCACTAATCATTGATTATGAT 3317 32 100.0 34 ................................ ATGTCTCGCAATCGCCTGAACTTGGTCAACAAAT 3251 32 100.0 35 ................................ TTATAACCCCTTGCAAACTGGTCATAATCCTCTGT 3184 32 100.0 33 ................................ AACGCACTCTGGACTTATGCTACGGCATAGTCA 3119 32 100.0 35 ................................ CTGAAAGTGGACAGGCTTGCCGCGTACTCTTTGAA 3052 32 100.0 33 ................................ TCTGTCTCATACTCACCGGTGCGAATAAAATCT 2987 32 100.0 33 ................................ CTCTTTGCCGCCACCGCCGCCGCCAGTCATCCG 2922 32 100.0 35 ................................ CTGTATGGTGTCTATACGGGGGTGATAAGCGGTTG 2855 32 100.0 34 ................................ TGGGAAATGGCCCTCCTGAAGACCACGCAAACGC 2789 32 100.0 34 ................................ ACCTCTACATTTCGTTAATTTTGTCTTGAGTCAA 2723 32 100.0 35 ................................ CCTTGAGTAACCTTTAAGCATTGCTGTAGTTACAA 2656 32 100.0 33 ................................ CTCGCAACGCTTTATTATCTGTAGCACATCGTC 2591 32 100.0 33 ................................ AATCTCTCTGGCATCTCCACCGGCTCAGTCACT 2526 32 100.0 33 ................................ AGTTTTACAATGACTCTTTTGTTTTAACATCTG 2461 32 100.0 34 ................................ CCATTTTATATCTCCAACTTTTGCGAGGTTGCAT 2395 32 100.0 34 ................................ TGGAATGACCAAGGCCAACAACCTCAACAGCAGG 2329 32 100.0 34 ................................ GATGAGGGCCGCGTTGTTACTCTCTGCTGTGGAG 2263 32 100.0 34 ................................ AACGCGCTTAATGCTCAGCTTTTTAACTTACACA 2197 32 100.0 33 ................................ CGCTACTTTTGCTTACACGGGTACTGAATGTGA 2132 32 100.0 35 ................................ TCGCAGCGCGAGTGGTGGCAATAACAACGGTAAAC 2065 32 100.0 35 ................................ TAGCTATATCAGGAGGGGCTTACGCCGCATTTCTT 1998 32 100.0 34 ................................ GCGCAACGCGTCAGCCTGCTGACCTGCGGCATTG 1932 32 100.0 34 ................................ AAAGTTGCCCCATAATACAGGCTGGTGAAATTGT 1866 32 100.0 34 ................................ ATGTAAAAGCCGCTCATCATTGCGAAAAATCCAG 1800 32 100.0 35 ................................ CAGTGAGCAGCTAGCAAGAACGACAGCAGATGAAT 1733 32 100.0 33 ................................ AATGATCAGTATGAATTATTGGGTTGGGCTGAG 1668 32 100.0 33 ................................ CTGCCCTGTCTTAATCCCCTTGCTTTCAGCTTC 1603 32 100.0 33 ................................ TAATCCTCCAATTCACTTGGGCCAAATGGGTTT 1538 32 100.0 34 ................................ TGGCATTTATAGCAGCCGCGTTTATTATCTTATC 1472 32 100.0 34 ................................ CGCTAGTCCCTTTAAGTGCGAGTCCTCGTTATAA 1406 32 100.0 36 ................................ GTCTTTATCTTGCGACTTTGAGATTGACTCTGAGTT 1338 32 100.0 34 ................................ CGATCAGGTTGAGTATGTTTTTCAAAGGTATAAA 1272 32 100.0 33 ................................ TCCTTATATCTGGAAGCGGAAGCCGCTATCACT 1207 32 100.0 34 ................................ ACTTTGCGCCCCCAATTTTAATGTGATGCTACAA 1141 32 100.0 34 ................................ TAAGTCTTTGATATGCAATATTAAACATAAGTGC 1075 32 100.0 34 ................................ ATCGTATCGCCTTCGGCTTGCATGGTATGAAGTG 1009 32 100.0 33 ................................ CGGCTTCGCCCTGCTCAGAGGTTACTCTTTGAG 944 32 100.0 34 ................................ TTTTATTTCAATCAACCAGAGCCACAGCAAACGG 878 32 100.0 33 ................................ AGTTTCAGTAATGACGGCCTCAACGAAAACTTG 813 32 100.0 33 ................................ CGTCTACGCCGCTTGAAGCTTTCTTAACGTCTG 748 32 100.0 34 ................................ TCGGACGATGCTTTAAAAGTCTACCAGTTCGGTA 682 32 100.0 33 ................................ GTTGCAAGTAAAAGCAGATGGGGTACTAGCATG 617 32 100.0 34 ................................ CATCGACTGATGGCGAGCTAAGGGCGATACCAAC 551 32 100.0 33 ................................ AAGTCATTTGATGCAATCTCAAGTTGAGTTAAT 486 32 100.0 34 ................................ CAAAAGGTTGGCGAGGGTTACGGAGAGACGCTAT 420 32 100.0 34 ................................ GCCTATAATTTTTTTGATTTGCTGCTTGGTTAGA 354 32 100.0 35 ................................ CTGTTATCACAGCTATGACAAACATCACTATCGAA 287 32 100.0 34 ................................ ATCGTTAAATATGTTCATGCGCTGTCCCTCCAGA 221 32 100.0 34 ................................ AATTAAAATACCATAGCGTTTAAGCTCTAACGAT 155 32 96.9 0 ...............................T | ========== ====== ====== ====== ================================ ==================================== ================== 55 32 99.9 34 GTCGCGTCTCCCGCAGGCGCGTGGATTGAAAC # Left flank : ATTTGTGATCAAAAAATAAGGAGAGTGCGCCATGATGGTATTGGTCACCTACGATGTATCTTTTGTCAGTGATGATGGGCAAAAACGCCTCAGGCAATTAGCAAAAGTCTGCTTAGACTATGGTATGAGAGTGCAATATTCAGTGTTTGAATGTGAAATAGACTCAACACAATGGTTAGAATTTAAAGATAAACTTTTATCTATTTATGATCCTGAAGTCGACAGTTTGCGTTTTTATAAGCTCGGTAAAAACTGGCAAAACAAAGTAGAGCACCATGGTGCGAAAGAAGCGATAGATATATTCAGAGATACCCTGATTTTATAATCGCTAGCCTTGAGTTCTCAGTAAAACACTGGGGATCTAGCGATTACATAAGTTCTTTAAAAATAGAGCAAATATTTGTTTTTATAGATTCACACAAAACAGTTTTCTTCTACCGCGTAAAGTTAGCGGCAAACCATAATATATGCTAGTTTACACGTGCCTTTCACAATAGGCA # Right flank : TGTCAACGATCACCGAAAACTGATCCACTTTTAGCTTAAAAACGATCAATCAAAATTGATCCACTCTTTTACTCAGGTATTGCTCCTGAACGTCGTTTATCTTTCAATCGATAACTATCACCAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCTCCCGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 40508-39424 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMS010000025.1 Vibrio metschnikovii strain M19C.6 Scaffold25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 40507 32 100.0 34 ................................ AGAATGAGAAGTGATCATCTTGAATTACCGAGCG 40441 32 100.0 35 ................................ AGTGCATAGAGCGGATACACGACATCACGCGTTAG 40374 32 100.0 34 ................................ CGCTTTATAAGTCAACAGCTACAGGGTCTTTTAA 40308 32 100.0 35 ................................ GCTATTACTCTTGCATACTTTAGTAGTCTTGACCT 40241 32 100.0 35 ................................ AGTCGAAGTCTTGCCAACAACCAATACGATCATAG 40174 32 100.0 33 ................................ GCTAAACTACAAACTCTCGACACTTTTAAATAT 40109 32 100.0 34 ................................ AATCTCTCTGGTATCTCTACTTGCTCGGTCACTC 40043 32 100.0 33 ................................ ACATGGTGTCATATTAACTCCAATCATTTTTTT 39978 32 100.0 33 ................................ TTGGTTGATTTGTAGTACAACTTGTTCGCCGAG 39913 32 100.0 34 ................................ CGTGAATACTTGCTTCGGATAAAAAAGATATTCA 39847 32 100.0 34 ................................ ACTGGATGGCTTAACCATGGATGGCGATGTAGCT 39781 32 100.0 34 ................................ CAAACTATTAAGTTTTACTTAGAAGAGATAGCAA 39715 32 100.0 33 ................................ CCTCTTTCATGATGCTATGAAGCTCTAATATTC 39650 32 100.0 33 ................................ CTTTGTTGCTGTCAAACGGCGGCGATCTTTCTT 39585 32 100.0 33 ................................ AATGGTACACCTAGTAATAATTACTGTAAAGGC 39520 32 100.0 33 ................................ TAGCATCATAAGCGCTATCAATTCCGTTTATGG 39455 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 17 32 100.0 34 GTCGCGTCTCCCGCAGGCGCGTGGATTGAAAC # Left flank : TAACATAAATCACCCGTATAAAAAATAAACGGATGATACCAAGTGGATCAGTTTTCGATGATCGTTAGTGGATCAGTTTTGCATGATCGGTGACATTGAAACAATACAAGCAAATAGCTCATGACTTAGATGTAA # Right flank : ACCATTACTGATAACTCGTATCTTTCTGACAAAAGTCCCACCTCACAAGAACATAGTGAAACTCGACTCGCTTAGGTCGACAGTTTGCTGTTACGGCAGCAAATTACCGGGCTTCACTTAACGCTCAACCATACTTTCTTTAAGCTGTTGCCTTGTATCCGGTTTTAGATAACTCATCATAATAAAACTGAGTAATCCACACAGTAGGGTCGGGACGATGGGATGGATGCCCGCTAAATCAGGTTTTAACCACATTAAACTCGTGTAGGTGGAAAGCCCAACGATCATTGAACTCAATGCGCCTGTCGATGAAGACTTTTTCCAATATAAACCGAGCACCAAAGGCCAGAGAAATACCGCTTGTAAGCCTCCGAGTGCCATTAAGTTAAGCCAGACAATCATCTCCGGTGGATTGGTTGCAGCAAAAAAAACTAACAAAGCAAAAATCATCGTCACCCACAAAGATAAGCGAGTCATCTTACTTTCTGCCTGCGGCTCAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCTCCCGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 4198-3930 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMS010000040.1 Vibrio metschnikovii strain M19C.6 Scaffold40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4197 28 100.0 32 ............................ AGAGAAAATCACTAACGCACCATCACGCACAA 4137 28 100.0 32 ............................ TAGCGCGTTTGATGCTAAATCCGCAGCTTGAG 4077 28 100.0 32 ............................ AAACGCTGAGCTAATCGGATTATGTCAAAATT 4017 28 100.0 32 ............................ TAGCCCCGTTTGTTTTAAAAAAATGTTTTGTA 3957 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 99.3 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TTGTCGGGTTTTGCTCTGATAAATTGTGTGTGCAAAAGGTTTGATTGTTGCTGAAAGGTCTCTTCCTTTGGCGTTGCTGGCTCATTGATTCCACAGGTTATTTCGCTTCAACTTGTTTGGGATCTTATTGACAACAATACTTGCTGAAAGTAGGCAAGTTTATCATTTTGAGTTAAAGTTGTTTTAACCAATAAGCGTTGAAAAATTCAATGTAATCAATAAGTAATAAAGCATAACAAACGCTTCAAGAGGGACTTCCAACGCGCGGCATTTTTATTATGCGTTGATTTCGGTGGTTTCAGTGTTATGCGGAAGGTTGGTAGTAGCGTTGTCAGCCCCTTAAGCGGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGAATTTTAAGTCATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAAGTTACTGATAGAGTTTCATT # Right flank : ATGGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTCAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCGTTGATTTTATTGGTTTTTAGTGTAATGCGGTGAGTTGGTAGTTGCGTTACTCACCCCTTAACGCGGCGTTATGCTTTATTGAACCTCAGCAAAATCAATATATAAATTTTAATGGGAAAACTCAGTCTGATTTAGAAGTTTTCCTATTCTAATTTATTGATATTATGAGTTTATTGTTCTTTTTGGTGGCTATTGAAAGTTGAGCGATGCTTGTACTTTTTCAGCCAACTCCGCTCTGATAAATTGTGTGTGCAAAAGGTTCGATTATCGCTGAAAAGTCTCTTTCTTTGGTGTTGTTTACTCATTAATTCCGCAGGCTATTTCGCTTCAACTTGTTTGGGATCTTATCGGCACCAATGATTGCTGAAAGTAGGCAAGTTTATCATTTTGAGTTAAACTGCTTCGAACAAATGAATTT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1556-124 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMS010000007.1 Vibrio metschnikovii strain M19C.6 Scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1555 28 100.0 33 ............................ TGCCGTATATTGATGTGGCATCTGGGTATTTGT 1494 28 100.0 33 ............................ CGATGACTTAGAAACGTGTCAAGGCTATATCAT 1433 28 100.0 33 ............................ CTATGAAACTCGTCAATGTGAAGAGGAAAAAAT 1372 28 100.0 33 ............................ TGAAGCGTTTTGTTATAGCTAGCAAAGAAAGGT 1311 28 100.0 33 ............................ CAGCTCCACTCAACCCAATAAATGACTTGTCTA 1250 28 100.0 33 ............................ CCGAACCTACTCAGCCTGAACCACTGCCCGACC 1189 28 100.0 33 ............................ TACTCCGCCCATTGATTACGCTTGAATTTCTTC 1128 28 100.0 33 ............................ TGATGAGCGAAAGCAAAACCGAGCAACTAGCCT 1067 28 100.0 33 ............................ CGAAGCTTATATCAAGTTAGTTGAACGAGCGCT 1006 28 100.0 33 ............................ CGCGATAGCGCTTATTTCGCGCCGCTTCGTTGG 945 28 100.0 33 ............................ CAAAAGACGATTGGGGCTGACCAGTTACGCGAG 884 28 100.0 33 ............................ CAAGTCGAATCGAATCTATCACGCGCACACTCT 823 28 100.0 33 ............................ CGTGTAAGCGATGAACTGTGCCAGAACGAAAGG 762 28 100.0 33 ............................ TGCTCAAGGCGCGTACATTCGAAAAAAGGAGAA 701 28 100.0 33 ............................ CAGACGGGATCATTGACGCCATCGCTCAAGCCT 640 28 100.0 33 ............................ TTTCGTTAGGTTCCTGGCAAGTCATGTGGGTGA 579 28 100.0 33 ............................ ACATTAAAAAGGTAATAGGTTGCGCTTCAAAAG 518 28 100.0 33 ............................ TGCGCGTCTCTTAACTCGGTGAATGTTCCTGCA 457 28 100.0 33 ............................ CCGGTACTGATTACGCGCAACTGTCTCGTGACT 396 28 100.0 33 ............................ TTGGTCTGTAAGCCCTAGTCATCTTGAAAAGGT 335 28 100.0 33 ............................ CAATACGGCGGCAGAGCAAGGCGCTCTCAAAAA 274 28 100.0 33 ............................ CACGGAATGGGGTCGCGCTCATGACGCCATTTC 213 28 100.0 33 ............................ CGGAACCCGTCTAGAATCTAGACGAACTAACAG 152 28 100.0 0 ............................ | G [126] ========== ====== ====== ====== ============================ ================================= ================== 24 28 100.0 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCGCTTACCCGATATATGGCCGGTCACTATGACAAACATAAGGTTTCTGATGCGTTTCGAAAACGCGTTATCAGCATGAATCTGTTACAGCAAGTCTCCTCGGATATTAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTGCCCCCAGCAGTTAGAGGGCGTATGAAGCTATGGTTTGTTGAACCAAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCAGTTGCACTGACGGTCGTTGACTATTTAATGCAGCATTGCCCTGTGGAATCTGGCTTAATGTTATTTCGCAGTATTCCAGAACCACCCGGTTATGAGATTCGCTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGATTTCTGGATTACAATTGATAGTCGAAACCCTTATTTCGTCAAAATAGCAATATATGGGTTTATTTTTGCGATCTTTAACAATATATTGGT # Right flank : CACCGATCATGCAAAACTGATCCACTAACGATCATCGAAAACTGATCCACTTGGTATCATCCGTTTATTTTTTATACGGGTGATTTATGTTAACCAAGGAGACATTTGTGGATATTCATGTTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 47436-47108 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMS010000007.1 Vibrio metschnikovii strain M19C.6 Scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 47435 38 100.0 34 ...................................... CGATTACTTTTAAAGCGTTGAGCTTTTCGGTTTT 47363 38 100.0 35 ...................................... TATAAAGCCAATAAGTAACGTTGCTGTGATTACTA 47290 38 100.0 35 ...................................... TTTTGCTAACAGCCCAAAGAACATGCTTTATATGT 47217 38 100.0 34 ...................................... AAATTAATGTAGCGAAACAATGTATACACCTTTT 47145 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== =================================== ================== 5 38 100.0 35 GTCCATCTGGACAACGCCCTGACTGAAGGGATTAAGAC # Left flank : TTACTGTCGTTAACCGCAACCTTAGAAGATAGTGCGTTGACTCCTCATCTACTGGCTGAAGGATTTGACCTTTGTTTGGGTTTTCACCATCGAACTGGTTATCGCCGATCCAGCCTAGTGCTGGATATCAAAGAACTGACTCGCTCAGATTTAGAGGCATGGTTGATCGCCTTGTGGCGGACTCAAAAACTCACCGCGCAAGATTTTGAGCAAACCGAATACGGCTGTCGCTTAACCCGAGCAGGGCAACAGCACTTTTATCCGGCTTTGTTTACTAACCACCCGCCATGATCGAATAATCAAGGGCAGGGGATATTGGCCTGAGTTAAGTGGCTTATTTTTTGCTGTTAAATTTAATCTTAATTATCATCGCTAGTTAGCCGCTTGCTCTATTTAAATGGTATGACAATTGCTTATTTTTGCCTTGCGGGCTTTTGTTTAAAACGCAAGTTTAATGATAAACTTGCATTAATAAAAACAATCGGTTATAAATAGCTTCT # Right flank : AGATATAGGGTGACGGCTGCGTAATCTTTTTTAAATGACCGTAGTTACGGGATGAAAAAACAGTCGGATTTCAAGGTGATTAGGTGTGAAGCAAAATAAAAATGACGCACTCAGTAAGAGGCGTCATTTTTTATGGTTCTGGCCTTATTTAATCTTGCTGAAAATGAATGTTTTCAGGTAGCACATTTAGACCTTTATATGCAATCGGGGTTCTGACGACCTCGCATTTTAATGGCTTGTAGGTATTAACAGTAACGATTTGATAATATTTTGCCAACCGAGTACCAAGAGCATCCGTCAATGCCATATTGGTTTCTTTCAGTAATCGTACCCATAAACTTTTATGGTATTTAACCAACGCTTTTACAATATCGTCATCGTTTTTTTCTTGCAGGCGTGTTTCATGGTTTGCATACAAAAATTGAATTTGCTTATTTTCTTGCAGCAACCAACGATTACGATTGTTCCGTTCGTTTAATGGTGTATTTGATGCTTCATCA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCATCTGGACAACGCCCTGACTGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA //