Array 1 45009-43785 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYQO01000011.1 Streptococcus agalactiae strain GCH35 11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45008 36 100.0 30 .................................... TCGTAAAATGATAAGTAATACAATAACACT 44942 36 100.0 30 .................................... TTGGAAAGATGGCAGAGGGGTTAACGCAGC 44876 36 100.0 30 .................................... TTTTGAGTTTTCAACTTATAGAGTGTATTT 44810 36 100.0 30 .................................... ATCTGGAAGCGGTCAAGAAAGCCCAGTATG 44744 36 100.0 30 .................................... ATGGTCAGAAATCGAAGAAAACGAAGTCGT 44678 36 100.0 30 .................................... AACTAAACAAACGCATTGTGTTTTTAGCTT 44612 36 100.0 30 .................................... TTGAACGGTCCAAGATTTTTCATCACTTGT 44546 36 100.0 30 .................................... CTTAAGCTTGATTATAGTATATCACCATTT 44480 36 100.0 30 .................................... AGTAGAAACATAACGATAATTCCATGAATA 44414 36 100.0 30 .................................... ATGTTGTAGAATCATATCGACCATATAACC 44348 36 100.0 30 .................................... CAATTGATTGCCGTTAAAACCGATAGAGGA 44282 36 100.0 30 .................................... TGAATTCCACGCCACCAAGTAAACCTGTGA 44216 36 100.0 30 .................................... ACAAGAAACAAACAGCCTTGATGACTTAAT 44150 36 100.0 30 .................................... GGGTCCAAATCAGCAATCTATGCTAAAAAT 44084 36 100.0 30 .................................... CAACCCTATGTTTGATAATATTTTAGACGT 44018 36 100.0 30 .................................... AAGTGAAGTTGAATTTTATTTGAGATACTA 43952 36 100.0 30 .................................... TTCTATCTTCTGAAGATATTTCACAAGTGA 43886 36 100.0 30 .................................... TCTTCTTTTTAATTCTTCTAACACTCCATC 43820 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGA # Right flank : ATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //