Array 1 230401-227338 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUMS01000001.1 Pelolinea submarina strain DSM 23923 Ga0244551_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ========================================= ================== 230400 33 100.0 34 ................................. TCTGCGCGAACGTCAGCCAGGCGCAGGCCTGAAA 230333 33 100.0 35 ................................. AGAATTGAAAGATTATCCTACATCATGGGGCTTTG 230265 33 100.0 34 ................................. ATCATCGGGGAGCTTCCAACCACCAGGGATGATA 230198 33 100.0 35 ................................. ATGTCAGGCGGGCGCACCGGCAAACCGGCTGCTTT 230130 33 100.0 33 ................................. TGGCTACCCAAAAACGTATTGCAAGTACGTAAT 230064 33 100.0 33 ................................. ATTGCGCCACTGGTCTTCTGACATTGAACCGCC 229998 33 100.0 34 ................................. CGTTGCCGGATTGCGCGAGGGACTTGATGGAAAG 229931 33 100.0 34 ................................. GTAATGCCGCGGTCACGCACAAGGAAGTAGAGTA 229864 33 100.0 35 ................................. TGAAGCCATTTCCATATCATAAAGCGTGGAATTTA 229796 33 100.0 34 ................................. AATGCCAATGGCCGCCCAATCGAAAGTGCTGGAA 229729 33 100.0 35 ................................. AGACCCGGGAAGAAGCTGAACAACAACGTCAGCAC 229661 33 100.0 33 ................................. AAAAATTATTGGTACAAGATTAATTAAAATATA 229595 33 100.0 38 ................................. CTCGTGCTCCAGCAGATAATCGCGCTCAGGGTAGCCAC 229524 33 100.0 33 ................................. TGGATGCTCGCGGTATTATGGTATCGCTGGGTG 229458 33 100.0 35 ................................. TTCGGATTTCCCTTGCTCAGCAACTGCGCACAACT 229390 33 100.0 41 ................................. TGTAATCGGTCGGCGTGAGCATTTCCGCATCGCGGAAGTTT 229316 33 100.0 35 ................................. AAGAACAACCCCGGCGCGTATCATTGGTTTTTGGG 229248 33 100.0 32 ................................. GTTTTCGCCTGTGGATAAGTTGTGGACAAGTG 229183 33 100.0 33 ................................. CTCGATGATGTCGCGCATACGCCGGTCGGTCAA 229117 33 100.0 35 ................................. ATAACAATGGATCAAGATCGGTTGAACGTCAAAAA 229049 33 100.0 34 ................................. TTTCCGGTAATAATCCACCTGCTGGCGCGTGACG 228982 33 100.0 33 ................................. TTTCATGCGTTAGGAATTACACGCCATCGCGCA 228916 33 100.0 34 ................................. TACAATGTACCGAATATACATCGCCAAAATGTAC 228849 33 100.0 34 ................................. ATGTTGGATAGCGTTGCGCAAAAACAGATCTAAA 228782 33 100.0 35 ................................. GTTGAAAAACGGTTTTGTTTATATTTGGGATTCCA 228714 33 100.0 34 ................................. ATACGAGCTAATCGGTAAATCAACGGGTGGAATA 228647 33 100.0 33 ................................. GTAAACCACGTCTTTACAACCTTGACATCTGGA 228581 33 100.0 34 ................................. AAAAAAGGCGCTGACGGAAAACCGGAAGGAAAGA 228514 33 100.0 34 ................................. AATATCGAAAAGGTGTAATCTTAGTCCATGGAAA 228447 33 100.0 33 ................................. TTGAATGAGAAACACGCCGAACTGACGGAGGCG 228381 33 100.0 34 ................................. GTAACCCTGGACGCCCGCGCGTAGAAAGGATAAT 228314 33 100.0 35 ................................. ACTACAATCATGGGCTTGACGAGACGCTGAAAAAG 228246 33 100.0 37 ................................. ATGGAAGATTGCGACCCGCCAAGTGAACCAGAAGAGA 228176 33 100.0 36 ................................. ATCGCCTGATAAATTACAGCGCACATTATCTTACAG 228107 33 100.0 35 ................................. CCAGAACTGGAGGAGAAATGAACCGCGAGATAGTG 228039 33 100.0 34 ................................. TAAACACCCTCGACCAATTAGAAAACCAGCGCGT 227972 33 100.0 35 ................................. AGGGTAATCAGGATATTGTTTGAAATCGTGGGATA 227904 33 100.0 35 ................................. ATAGGCTCTTATGGGCAGGTCTGTATATTGCCGTA 227836 33 100.0 33 ................................. AAAGAGACGGCTAACAAGGAACTTGCGGACGGG 227770 33 100.0 34 ................................. ATTGGACGGAGCTTTAAGGAGATTTGGATATGAC 227703 33 100.0 33 ................................. ACTTGGTCGGGGTATACTTGGATGAGGTCAAAC 227637 33 100.0 31 ................................. CCTTTAGCATTGTGTAAAAACTGCTTGGGAC 227573 33 100.0 36 ................................. CCCGCCTATTGGGTGTTGGTGCTAATCGCTGTTGGT 227504 33 100.0 34 ................................. ATATTTATAATAACCGTTATCGTTATAAACTGAC 227437 33 100.0 34 ................................. TTCTGTGCCCTGGTGCGGTTCCAGATCGTCAATG 227370 33 97.0 0 ..............................T.. | ========== ====== ====== ====== ================================= ========================================= ================== 46 33 99.9 34 GTCGCTCCCCGCATGGGGGGCGTGGATTGAAAT # Left flank : GGATGCATATCCTCCATTTTTTTGGAATTAGGAGCCAATGTAATGATGGTTTTGATTACTTATGATGTGAATACCGAAACAGAGGATGGGAAGAAGAGGCTACGTAGAGTAGCTAAACAATGCCAAAATTATGGCCAACGTGTTCAAAACTCCGTTTTTGAATGTATTATTGATCCTGCCTTATTTAAACGGCTGCAAGCCAAATTAGCTGAAATAATGAATAAGGAAAAGGACAGTATCCGATACTATTATCTGGGAGATGATTGGAAAAAACGTGTAGAACATGTCGGAGCCAAAGCCAGTATTGACATTGAAGCCACGTTAATTGTATAAACGCGAACCCAATGTGAACATTAATTTATTGTGGGATTCGCAGAAATTTGCATAAGTATTTTACGAAATAAATCAAAATAATAGCTTTTTTCAAAGGGAAAAATAGTTGGAGTTGCAGAGTAACCCAAGATATAGGGGGACATTGGTATAATTTGTCACATGTTGCA # Right flank : TTTACGTAAAACTCCATTGAGGGCGCATTATTTCAACATACCAAAACTGTTTCCCCCACACGCTTGGGGTGTTCCTGTCAAGGGTATTTTTTAAACTGCACCCGGGTGCAGTTTTCTCTTCATACGTGGGGGTGCAGATCCTTCGGTCACTTTGTTCCCTCAGGATGACAACATTATTTTCTCCCGATCGAGAATAATTCTTGTGTTTATTCACAATTAAGAAATATTCAATCGGGCAAGATGTTAACCAAACGCGTGGGGGTGCAGATCTTTCGGTCAGGTTGTTCCCTCAGGATGACAATATTATTTTCCTTTTCTCTGAATAATTTTGTGTCCATTATTAGTAAAGAAATATACAATAAAGTAACTTATCGTTTTATCAAGGAGGTTTCAAGCATGAGCAGGAGCGAACTCATTGAAGTGGCACGGGGGGATAGACCCTTAGACTTAGTCATCCAGAACGTAAATCTGATCAATGTTTTCACTTGTGAGATCTACCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCATGGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //