Array 1 100036-99557 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPHC010000002.1 Clostridium thermobutyricum strain BSD2780061689_150309_F3 NODE_2_length_361536_cov_44.6663, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 100035 36 100.0 28 .................................... ACTAATTAAATCATCATCTGCAATTATA 99971 36 100.0 27 .................................... TGGTTAAAAAACAGGTTACAGGTTACA 99908 36 100.0 27 .................................... TGTTATTGCTTTGCATTTTAGCAGCAG 99845 36 100.0 27 .................................... CTATTCCTGTTTTATTATTTTTTTCTG 99781 36 100.0 0 .................................... - Deletion [99746] 99779 33 91.7 26 ---................................. TGGATGAAGTTTATTATGACATTCTC 99720 36 100.0 27 .................................... TTTTCTAAATACTTATCTTCTTCTGAT 99657 36 100.0 27 .................................... AAACTAATATAGTGCTTTAATTACTTG 99594 35 80.6 0 ..........G...G.......T...-..A..TA.. | AC,G [99573,99577] ========== ====== ====== ====== ==================================== ============================ ================== 9 36 96.9 24 GTTTAGAGAACTTATATAATTTCTACTATTGTAGAT # Left flank : ATAGAGAGGAAATATTTAAATATATACAAGGATATTATAGATGTTTTATGAAACAAAAATATGCAGAAGAATTTCCTGTATTTAAATTAAAGTAAATATATATGATTATAGTTAGTTATGATATTTCTGATAATAAATTAAGATCAAGATTTTCAAAATATTTATCAAAATATGGACATAGATTACAATATTCAGTTTTTGAATTAAATAATAGTAATAAAATTTTAAATAATGTTATGGAAGACATAAAGAATAGATTTGAAAAACAATTTAGCCAAGCAGATAGTATAATTATATTTAATATGTCAAGTAGTTGTAAGATAACTAGGTTTGGATATGCTAAAAATGATGATAAAGGATTTATAATAATAAAATAATTGCAAACCTAAGTCTTAATATATATAATAAAAATTAAGTTCTCTAAAAATTGAATAAAATATTAATAAAACTTTATAAAATATTAAAAAGTTTCTAAATGTATGCATAAAATTGCATTAAGG # Right flank : TTTAAATTGATATAAAAATATAATAGTAATTATATATATGTAAATAATAAAAGTGTATAAAACACGAAATATACAATAAATATGCATAAAATAATACATTTTGTTGAAAGAAGTATACTTAAAGCTAAATCTAAATGATTTAATTAGGTATACTTCTTTCATTTTTATATACTAAAATAAATTTTCAACAATAAAAAATATGAAAAATGAATTTATGAGATTAATTGCTTTCAAAAAAATATTAATAAAGAGTAAAATATTGTATTCTTACATAAAATTTTAAAATGTATTATTATACATAAGTCTATAACTTAAATTAATGATTTAATAAAAAAAACGAAATGTTTTATTAATCTGATTAAAAATAAAAACAAATTAATAAAATAAAAATTTTATAATGCTCTTTTAATAGAATTTTAATTTATGCAGAGTTGATTATTAAATGCATTCAGTATATCATACTAAATAAGAAATTTCTGAACATTTAAAAAAACTTAAGT # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.55, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAGAACTTATATAATTTCTACTATTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 560133-560427 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPHC010000001.1 Clostridium thermobutyricum strain BSD2780061689_150309_F3 NODE_1_length_1280304_cov_37.0564, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 560133 30 100.0 37 .............................. TCAAAGGTATAGCTCCAACAGCTATGGAAAACCACAG 560200 30 100.0 35 .............................. AGAATGTTGGCAGGAATGAATAAAGAATGTTTAGG 560265 30 100.0 37 .............................. ATAACATATTTAGGTTTGCAATGTTCACATATTGCGA 560332 30 100.0 34 .............................. ACTTTGATGATTATGTTGAATATGTATTAGGAAG 560396 30 93.3 0 .......................T....T. | A,T [560419,560424] ========== ====== ====== ====== ============================== ===================================== ================== 5 30 98.7 36 GTTATAAGTTAACTATAAATGATGTGAACA # Left flank : AGTAAAAGCTGCGTAAACTTCACAAACATGTAGTGAGTGTGGTAATATAGACAAAGAAAATAGAAAAAATCAGTCTACATTTAAATGTACTAATGAAAATTGTAAATTAAATAAAAAAAGTATAAATGCTGATTGGAATGCAAGTATAAATATTGCAAGAAGTGAAGAGTTTATAAAATAATATAAATTTTACGGTATATTCAAATGCCGAAGAATGAGAGATATTTGATTTAAAATAGCTAGGTTTAGGCCAACAACTATAAATATCTACTCGTTAAAGGTTAATCCAGATGTTATATTACTGTCTGGCATCATATAAAAATAAATATATCTATATAGTTTGCCGTAGATCTATATAGATAATAAATCAATCTTAAGCTAGTTATAATGAGAATTTTAAAATAATTTTTATTATAGTTAAAAATATTACTGTAGGTTTACTGCAAATTATATAGATTTAATGACTTATAAATGGCATGGTTGACTAATTTTAAATTGGG # Right flank : AGGAAATTTTATGAGTAATAAATAGATGTAAGCAAATAAGTTTATATCTATTTTTTTACGAAAGAAGGAATTAAATTAATAAATATTGATTATATATTCAATTGTAAAATGTATTATATTAATCTTAGTTTATATTTTTGATATTAGACAAATTATACTAATTTTTATATGTATATTTGGGGATTATTCTTTTATAATATTACTGAATTTTTTTGATAATGTTGAAAAAAGTGATGGAGAGGGTATATAATTTTTCTATTTTTAATTATTGTTTGGTTAGCTTTTGCATATGTTTGCTATGAAACAGCTAAGGAAAAAGGATTAAACCAAGACTTATGAGGAGTATTGAGATTAGCGTTTGGAATTTTTGCATTAATGGTTTTAGTATTAATACCAAAAAATAAATATGGAATTATCTTTATTAGCAATTGTTATTGTGATAGTTAAGTATTAGTCTTTAGTACTTAAAATAAATTAAAACACAAAAAAAATAGTGAGAA # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAAGTTAACTATAAATGATGTGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 72391-72953 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPHC010000008.1 Clostridium thermobutyricum strain BSD2780061689_150309_F3 NODE_8_length_168716_cov_37.0323, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 72391 36 97.2 30 ...............G.................... AAAAATGCAGTAAATCCCCAACCGACACCT 72457 36 100.0 30 .................................... CCATCAGGATTATTATACTCTGTAGTTCTT 72523 36 100.0 30 .................................... TTTTGTGAAACGATAGAGCTAGTTTAATAC 72589 36 100.0 29 .................................... CATACGTGTCCGTGTTGTGTAGTCACAAA 72654 36 100.0 30 .................................... TTGTTAAATCTTCTTTAGATTCTATTTGTT 72720 36 100.0 30 .................................... ACAGATATAACAAATGGAAAAGAAGTAGCC 72786 36 100.0 30 .................................... AAATATACTTTTTTAATTAAAAATTATTTG 72852 36 100.0 30 .................................... TAAATTAAGCACATAGTCTATGTTATTATA 72918 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 99.7 30 GCTATAGTTCCTAGTAAATTTTTGATATGCTATAAT # Left flank : TTTGTATCATGTTATATTCATTTTTTACCTGGATTTCTATATTTATATGTTCTTTATTATTAGTGGTGGCTTTTATATCTAACCTACTAAATTTACTTTCTAAATACTCTTTATCTATATCATTGTTTCTTATTTCGACTTCTTGTATTGGATTTGTTGGTTTAATTACTGCATTTAAAAAATTTATTAATATAGGTTTATTCTTTTCTGACCCAAATATCTTTTTAAATACAAAATCTATTTGCGGATTAAGTAATGTCCTATATACCATGATAATATTCCTCCTTATTGGTTAGTTTTTATAGTTAATTATATTATAGACTATTATATAATTTTAAAATACTATATTTTCCTAAATTATCTGAAAAAGAACTAATTATATTATCAAAATATTTACCTAAATTACTAACTTATTCTTTTAAACTTCTAAGTTAATTATTAACGCCTTCAGTAGGAGTAATATCTTTAATCTAAATAGTTTCATTGATACCATTGTTATT # Right flank : TATGAATTATAAAACCCGTTGAAATTACTTAGTTTCAACGGGTTTTAACTTTCTAAAAAATACTCAATTGTGATGAATTTATAGTCTTTTCTTGTTTTTTTGGCATACCTACTAAGAATTTCATTTCTGAAAATTGTTTTTCTGTTATCTTTAAATATCTAACTGATCCTTTTGATGGTAAATTATTTTCTAATCTATTTAAATGTTTATTTACCCCATCTGTTCCATTACATATTCTTGTATAAACTGAATATTGAAGCATAATATATCCATCGTTTAATAAAAATCTTCTGAAATTTTGATAATCTTTCCTATCTTCTTTTCTAACAACAGGCAAATCAAAGAAAACTAATATTCTCATAAATTTATTACTCATAAGCATGATATTCTAAATCTTTTATAATAGGAACTTTTAATAATCTAAAGTCTTTATTATTTACTGCTGTCGTATAGGAAGATATCATTTTATCTATTGCATTTAAAATAGAATGTTTTTTATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTATAGTTCCTAGTAAATTTTTGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //