Array 1 1726156-1726976 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCJF01000005.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL00641 2015LSAL00641_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1726156 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 1726217 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 1726278 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 1726339 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 1726400 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 1726461 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 1726522 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 1726583 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 1726644 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 1726705 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 1726766 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 1726827 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 1726888 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1726949 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCCCAACAAGGATAGCCGTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1748417-1750094 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCJF01000005.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL00641 2015LSAL00641_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1748417 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 1748478 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 1748539 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 1748600 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 1748661 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 1748722 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 1748783 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 1748844 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 1748905 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 1748966 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 1749027 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 1749088 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 1749149 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 1749211 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 1749272 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 1749333 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 1749394 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 1749455 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 1749517 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 1749578 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 1749639 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 1749701 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 1749762 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 1749823 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 1749884 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 1749945 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 1750006 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1750067 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTNATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCNAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCGAATATATATGATATCGAATAACGAAGCAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCCTGATCCCGGTACTCCAGAGTATTTCCAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGTCTAACACTCAAAGGTGGAATGACAGAGCCTTGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTGCCACGCACCGCAAACAGGCAGTCTTCACGTGTTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1750342-1752202 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCJF01000005.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL00641 2015LSAL00641_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1750342 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 1750403 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 1750465 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 1750526 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 1750587 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 1750648 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 1750709 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 1750770 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 1750831 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 1750892 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 1750953 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 1751014 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 1751075 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 1751136 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 1751197 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 1751258 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 1751319 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 1751380 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 1751441 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 1751502 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 1751563 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 1751624 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 1751685 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 1751746 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 1751807 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 1751868 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 1751929 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 1751990 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 1752051 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 1752112 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1752173 29 93.1 0 A...........T................ | A [1752199] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGATAAACCGTCGTTTCTGGGAGCGGGTCTTTCCAGTATTGCGTGTTCCCCGCCCCAGCGGGGATAAACCGCAGGGGAAGAGGTTCCGGCCCAGCAGTTCTATGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGCTGGGTCGTGTTTGACTCAACGCTCCCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGATTTTAGAATTACGCATTGAGCCGATGATGTAGTGTTCCCCGCGCCAACAAGGATAGCCGTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCNAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1779475-1781456 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCJF01000005.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL00641 2015LSAL00641_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1779475 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 1779536 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 1779597 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 1779658 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 1779719 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 1779780 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 1779841 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 1779902 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 1779963 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 1780024 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 1780085 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 1780146 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 1780207 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 1780268 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 1780329 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 1780390 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 1780451 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 1780512 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 1780573 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 1780634 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 1780695 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 1780756 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 1780817 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 1780878 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 1780939 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 1781000 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 1781061 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 1781122 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 1781183 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 1781244 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 1781305 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 1781366 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1781427 29 96.6 0 A............................ | A [1781453] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTCCAAATATTGATGAAACAAGGCAAGTAGCCAGGCAATTAGTTCAGACCATGCTCGCAACAAAGAGAAATTCCAACAAAATTAAGAGGGAAACGGATGCTTCCAAACTCAAAATGAGACTGTAATTAAAATTGTGTTGCATGAAGGCAAGCCGATCCATTTCGCCACCACGGTTATTGCGCTTTCTTCCGATAGGTATCTGGAGCTGTGCGATCTTTACTCGTCTCAGGCGATCGGGTAACTACCTGCGTCGGATTACGGCTTCGTTTTTTTGGCCTGCGATCTTAATGCTGAAATGGGCAGAAAAACGCGAAAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGANAATGTCAGTGAGGGTAGGAAGCCAAGTTCTGTCTTGAAAGTAAAAGTTGGAAATGTGTTCGATTTTCCAAATATTGACGAAACAAGGCAAGGTGCCAGGCAATTAGTTCAGACCATGCTCGCAACAAAGAGAAATCCCAATAAAATTAAGAGGGAAACGGATGCTTCCAAACTCAAAATGAGACTGTAATTAAAATTGTGTAATTGCCTGATTTTGATATGTTCGATTCAACATCAAAAGCTGGTTGCTTTATGGACGAAAAACAGTTGCAGGCTCTGGCTAATGCACTGGCCAAAATCTCAAAATACCTGAAGATCTCAGCCCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //