Array 1 1243-74 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSIE01000023.1 Bifidobacterium longum strain AM34-3 AM34-3.Scaf23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 1242 33 100.0 34 ................................. ACTCGGCTTTGGTGAACCGTATCGGCGGTACCTA 1175 33 100.0 34 ................................. GCGCCATGTAGCTCGTCTCTCCCGCATTGCGCAG 1108 33 97.0 33 ................................G ATTGGCGTGAGCAGATCGTCACTCATGGCCGGC 1042 33 97.0 34 ................................C CGCACCGGTCGCATTGCATGACCGTCGCATTGTC 975 33 100.0 38 ................................. TTCTGCTGACCGCCGGTGCCATCGGATACCTGTTCAAA 904 33 100.0 33 ................................. GCACTATGCTCTGCTCGCGCGGCTGGGTGTACC 838 33 97.0 32 ................................G ACGTGCCCGAAGGCATCGTTGGCGTGCCTCTC 773 33 97.0 35 ................................C GGTCGAATGCGGTCGAGTATCGTATCGGCGACACC 705 33 97.0 32 ................................A AACCGTAGTCGTCCGACGCGATAGGCGTTCAG 640 33 97.0 34 ................................C AGTTCCGGGTATTGCTCTGCGATATCTGCAAACC 573 33 97.0 33 ................................A ACACAGCCAAGGCGGATACGTCCTATAATCATG 507 33 100.0 34 ................................. CCCATACAAGATTCAAGGCCTTACGCAGGGAGGG 440 33 97.0 34 ................................G CGGTGGGCGTGGCCTCGGTGGAGATGACGTTGAG 373 33 97.0 34 ................................A CATCTGCGTTACGCGGCAATATCAACGTCTTCAA 306 33 97.0 32 ................................A AGGTTTTCGGCCCATAGTTACGAGGTTCGAAC 241 33 100.0 34 ................................. TTACCTTGAAATGGGCGGCCTACGCGCTATGGGT 174 33 97.0 35 ................................G ATTACGTACAAGACGATGACTACGCCGAGCAAAAG 106 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= ====================================== ================== 18 33 98.0 34 GTCGCACCCCACTGGGGTGCGTGGATTGAAATT # Left flank : CCACTACCCATTTCGCGCTCAAAAAACGTGAGGCACGTCGGTGCGTGGATTGAAATAGTTCCGGTGTTACAATATGGAGCAGGCCCGAGGA # Right flank : AATCAACAGCACCATTTGCTGTGGGTTAGCGTATGTTGTATTTCGTCAAGTCGGTGTTTCGTGTTTAGTCATGT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 118524-118868 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSIE01000008.1 Bifidobacterium longum strain AM34-3 AM34-3.Scaf8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 118524 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 118590 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [118596] 118674 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCGCGGTC 118734 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [118782] 118782 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 118839 27 81.5 0 C.............C.....C....CG | GC,C [118856,118860] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 87.7 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 50002-52027 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSIE01000014.1 Bifidobacterium longum strain AM34-3 AM34-3.Scaf14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 50002 33 100.0 33 ................................. ACACCAACCTATCCAACACCGCTAGCACGGACA 50068 33 100.0 34 ................................. CTCAGTCAAACGGACTCGGAAAGACCATTAACGA 50135 33 97.0 32 ................................G CAAAGGCCGGGTACACGTTCGAGGAAATCGCG 50200 33 100.0 34 ................................. TGGACGAGGCCGTGCTCGAAAAAGACGACAAAAA 50267 33 97.0 33 ................................T TACCTTGCGTCGGGTCGTATACCGGTAGTGTTG 50333 33 97.0 34 ................................T ACAGTATGGCTACACGTTGCGCCAAAACGTGGAA 50400 33 97.0 33 ................................G CCTAGGGTGACTGTCACGACGGCGTGGAAATCA 50466 33 100.0 34 ................................. GGACTTGATTTTTGAACATGGTGAACAAGCGGGC 50533 33 97.0 32 ................................T GGTGCACGCGGTTTTGTTGCATGGTGCGTACA 50598 33 100.0 34 ................................. GCGTGGTGGCTTTGTCCACGGTTTCCGCGCCCAA 50665 33 97.0 35 ................................C CGTGACAGTGAAAAAGACGCCGCTTGGTGGTGGAA 50733 33 97.0 34 ................................T ACGCGGGGTTGTGCTGTGAGGTGGTGTTTTAGGA 50800 33 100.0 33 ................................. ATGAAAGCCAACGTGCTGAAAACCAATGTCGAA 50866 33 97.0 33 ................................C AAGTGTTTGCGCGTTAGACTTGGTCAGACCTAA 50932 33 100.0 33 ................................. CACGCAATGTGTTTTATTATTTCCTCTTGACTT 50998 33 100.0 34 ................................. ATCTCGTGCGCGAAAAACTCGATGGTCGGAATGA 51065 33 97.0 34 ................................T ATGAATCGTGTAGCCGAGTGAACAATAAGGGAAG 51132 33 97.0 33 ................................T TTATGAAAGGGATAGTATGCTGAGAGATATCAA 51198 33 100.0 32 ................................. AAGATATCTTATGGCAGTACGCGCGACGCCTC 51263 33 97.0 33 ................................G TGTAGATAATCGGCTTGGTACCCCATGCGGCTT 51329 33 97.0 33 ................................C ATGTGGTCGCCAAGTCGGTGGCTCCTCCGAATG 51395 33 100.0 34 ................................. ACATTGACACTATGGACGGCAAAATGGCGCTGTA 51462 33 97.0 33 ................................T ACGGTTTTCGCGTGCGCATGGGCGGCATCACCG 51528 33 97.0 34 ................................T CCGCCCCAGTCGTTGACATGGCCGTTGCCAGTGT 51595 33 97.0 33 ................................C CGAACGCAATGAGATTGCCGAGTGTCTCGGTGT 51661 33 97.0 34 ................................C TACCCGGGTCACGTCATCTCAATGATGATGGCCA 51728 33 97.0 35 ................................C CATTGCACCGGCCACCACCGGTGAGGCCGCGCCTC 51796 33 100.0 33 ................................. AGCGGCGTGTCAACGATACGCTCACACGCGATT 51862 33 100.0 34 ................................. ACCTCCAAAACCCACACGCCCGTTGGCCTATCCA 51929 33 100.0 32 ................................. CGGTGGACGTGCTGGTGTGCGACGAGGCGCAG 51994 33 75.8 0 .....................A..TGCCTC..T | C [52013] ========== ====== ====== ====== ================================= =================================== ================== 31 33 97.6 33 GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Left flank : GACGAATCGCAAGATAGCCTGCGTTACTACAATTTAGGGGCGAAGTATTCTTCGAAGATTGAGCATCGCGGAAGACAGCGGCACCTGCCAATCGATGACGTGATGATGCTCTAATGTCGGTTCGTGTGACGGTTTTCCATGATGACTGGGCAATGCAAAACCTTACTGTGATGAAGACCAAGGCGGATAAAACGAGGTAGGACAGTATAGGACGATACGATTAAAATCGTGGCTGAGCATCGATGCTTGATGCTGCAGCCATGTGACCAGCGCGAACTCTGAGTTCTCATGAAATACTTGTTCTTTCGCACTGAGATTAATGAATGCTTGGAGACTGATTATGTTCTCCTCGTCGTTTGATAACTCAAAAGTGGATGGTCTGTTGATGTTTTTGGTTCGAGAATTTGTGTATTGAGCGATGTACATGGATTTTCGCGATAAAATCAGTTTTGAGAACAGACGGAGCTTCCATATTATGGAATGCTATGCCCATTCTCGCG # Right flank : TGAAAGTGAGCGCGAAACCGGGAGTGG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.00,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 197485-192606 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSIE01000005.1 Bifidobacterium longum strain AM34-3 AM34-3.Scaf5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 197484 33 97.0 34 ................................T TGTGTTTTGTCCTGTGTTTTTCATCGCTGCTCCT 197417 33 97.0 33 ................................G CCGCCGTCAATCGGCAGGCCGTAACCTCGATTG 197351 33 100.0 32 ................................. CCGACAACATGCGTTACCTTGGCGGCGAGGTC 197286 33 100.0 33 ................................. GGTCAGGCGGGACTCTGCTACTGGGATTCGGTC 197220 33 97.0 32 ................................T CCTTCTTAGGACGTTAGGCGTTATCCAGCCCA 197155 33 97.0 33 ................................T TGTGCAGCAATGCGCGACGGTTGGAATTGGAGA 197089 33 97.0 33 ................................T CAGACGGGGCAGAAATGCGTAAACGTCTATCTT 197023 33 97.0 33 ................................T ACAAGGTGCATCTTGATAATGTACCATCCGACG 196957 33 97.0 35 ................................A TCTATCTACGCAGGACGGCGGAGGAACAGAAGAAC 196889 33 97.0 33 ................................A AGTTGGTCAAGCAACAATACATCAATATCTACA 196823 33 97.0 33 ................................A ATGCTAACGGACGTGTCACCGTTGCTTCCAACA 196757 33 93.9 34 ...........T....................A TCATCCAATAGGTCTACAGTGTATGCGCTGGTGC 196690 33 97.0 33 ................................A CACGCAAATTGACAAACTCGCACCTGACATGCA 196624 33 100.0 34 ................................. AGTATTGGACCGCGTATAGTGATAGCCATCAACC 196557 33 97.0 35 ................................A TCCAGCATGTCGAATACGTCAATGCCCATTGTACG 196489 33 97.0 33 ................................T GGCAGATGCAGGAGGCGTATGTGAGGGGTGCGT 196423 33 97.0 33 ................................T CCGCTTTGCCGTTGATGGTGTCCTTAAGATTCT 196357 33 100.0 33 ................................. ATGTCCACGTTGATGATGGCGTTACGATACTCC 196291 33 97.0 34 ................................T TGATAATGTTTAACTGTACATCCAGCTGGTGTAG 196224 33 97.0 33 ................................A GGGCGGTGTACGCCGGCTTGTCCCAGTCGGGCG 196158 33 97.0 33 ................................A GCCTTGGTCGCGGCGGCTTCGGCGCGACGGGTC 196092 33 97.0 32 ................................T GCAAACCCGTATAGCAGTCCGCGTAGCGGTCG 196027 33 100.0 32 ................................. TGAGAATTGGGGTGATGGTTGCGTCCACGGTC 195962 33 97.0 35 ................................A CTTGGCGGTCGTGCAAGCGTTGCACGCCGTCGGTC 195894 33 97.0 33 ................................G ATGCAGCTGCCCACAACGGGATGTGGAATGACT 195828 33 100.0 34 ................................. TCGGCAACATCACCACGGGCGGCACCATCACCCA 195761 33 97.0 34 ..................T.............. TGTGCGATGTTCCACGTGGTTTCCAAATCGTCCG 195694 33 97.0 36 ................................T AAGAAAACGAATGAGATACCTACCAATTGGTTTGAT 195625 33 97.0 34 ................................A CGGCAATCAACACATTCATCGCCGGCGTGATAAG 195558 33 97.0 33 ................................T TGATGTCCTTCGTGCGCTGGGCCTTGCTCTTCG 195492 33 97.0 32 ................................T CCGGCCGGGGTTGGACGCCCTATTCTGGTCGG 195427 33 97.0 34 ................................G CCTATCAGGAGACCATCTACAAGTTCGGCCGCAA 195360 33 97.0 38 ................................T TTCAAAAGTCTCTCCCGTGAGGAGCAGGACAAGCGCTT 195289 33 100.0 32 ................................. GGTACTCCTGAATCAGGCTCATGGCGCTCTGA 195224 33 97.0 32 ................................G TGACTGGCATAGTAACGACGCCGAGCGTACTA 195159 33 97.0 32 ................................G TTCTCGCATGTCCAACGGGACTCAAAATCAGC 195094 33 97.0 32 ................................G GACTGGGCGACGCCGCGACCGTGGCGGCCAGC 195029 33 100.0 34 ................................. ACGTCCGGCGGTTCAATCCATTCGCGCATCAGAA 194962 33 97.0 35 ................................A TGAATTGGCCATAGGATTCGCTGATCTGCTTGGCG 194894 33 100.0 32 ................................. TTGTCGGAAGTCTTGGAACCATGCGTTGCGCG 194829 33 97.0 31 ................................A TGCAGTGCGCCGCACTCGGCCTGAAACCCTC 194765 33 100.0 35 ................................. CGGCAGGTTGCGCGGCCTTGGCCCCATTTCGGCGG 194697 33 100.0 34 ................................. AGGTGTTGACCACTGGCGTGGTGTTGCCCTGGGC 194630 33 100.0 33 ................................. AGTTCTCCGTCGTAAGCTTGCCCGCTCCGGCCG 194564 33 97.0 32 ................................T TCGGCACCGTCCTCTTGGCGCGTCGGCGGTTT 194499 33 100.0 34 ................................. TCCACGTGCATCTTTACCCGTGGCAGAAATGGCT 194432 33 97.0 34 ................................A ACCACGTTGCCATTAGCCGACCCCGGATAGTTGA 194365 33 97.0 35 ................................A TTTCGGGCATGAAAAGAAATGCTTCTGCAGCCTCA 194297 33 97.0 33 ................................A AGATGGTCAAGTAACAATACGTCAATATCGACA 194231 33 97.0 32 ................................G CCATAGCCAACGCACCGCCGTTGTTGACAACG 194166 33 97.0 34 ................................T TGCCACCCTCGCCCACGGTTCCAGCGCCGCCCTC 194099 33 97.0 33 ................................A ACGACCACCCCGAAAACACACCCGTATGGGACG 194033 33 97.0 33 ................................T ACGAAGCTCGATAGGGACGGAGACGGAGTAGCC 193967 33 100.0 32 ................................. CGGAGACGGCCGAAACGGCACCCGCTCATGGG 193902 33 100.0 32 ................................. ACGTGAAACAAACCGCAACCGGAGAGCGTAGG 193837 33 97.0 34 ................................T GCGAGGTGACGGAACCGGAGTTTTTGAAACGTCA 193770 33 97.0 33 ................................T TGCCGCCTTGCAACGTGACGCGCCGCCCGCCAA 193704 33 97.0 33 ................................T TGAAAATCGCCAGCGGGTTCTCAAACGGTGCGT 193638 33 97.0 34 ................................A TGACAGCCTCCAAACGTTTATCAGGCGCAATACC 193571 33 100.0 33 ................................. CGCCGTTGCCGCCTCCGTATGGGGGTGTTGCCG 193505 33 100.0 34 ................................. TGAGTGAGTGCGAACGCCTGTCGGGCGGTGTGCG 193438 33 100.0 34 ................................. TGAGTGAGTGCGAACGCCTGTCGGGCGGTGTGCG 193371 33 100.0 35 ................................. ACTGGACTTGCCGACCGATTTGGCTCCGTCGAAAG 193303 33 97.0 34 ................................G GGTGAAACCGTTTGTTATGGTGGTGCCGGTACGA 193236 33 97.0 35 ................................A CGATCACCAATACAAGCAAGGACGAGGACGGGCAC 193168 33 97.0 32 ................................G CCGGGTCGGTGATGCTCGCCTTGTCGACGGTC 193103 33 97.0 34 ................................A ACATCTGTAAGCGGCGTCCGAAACTCCATTGCGC 193036 33 100.0 33 ................................. CGACCGTAGCGGTTGATGTAATCCTGTGGGATT 192970 33 100.0 34 ................................. TCCACGTGCATCTTTACCCGTGGCAGAAATGGCT 192903 33 97.0 33 ................................A GGTCATGCAGCATTCTGTTGGCGCTCTCGTATC 192837 33 100.0 33 ................................. ACGCGAAGGTCGGCCGATGGCAGACGGCGAGCA 192771 33 97.0 33 ................................A TCCAACACAGGGTAGTAGTCCTTGATAATCATG 192705 33 97.0 34 ................................A CCCCATATCCTACACGGGGCGAAGCCATACCCGA 192638 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 74 33 97.9 33 GTCGCACCCCACTGGGGTGCGTGGATTGAAATC # Left flank : CATCGTGACTAAACCCGCAACAACTAATTGAACACAAACAGTA # Right flank : GGCATGGAATTGTCCCCGCTATAGACGTTGCCACTCATGGTGGCAGACGCGGAGAGATAACCGCGCGACGGCTAAACCGGACGTCTGGAATTGTATAATTGGGCTCACTGTAGCGAGTATGCGAGGTGAGCCATGAGTCTTAGGGAGTTAAGGCAGAAACGCGGGTTAACCCAGCGTCAACTAGCTGACAAGTCAGGCGTGCCGCATACACGAATCGCCACGACTGAAACCGGGTCAAGACCTATCGAGAACATGAGTCTTGGCATGGCTATCAAGCTGTGTGACGCGCTCAGGGTATCTAATCCGCGCAAGCTGTTAGAGGCTGATAAGCCGAAAGAAAGCGCCGCCAAGTAGGCGGGCGCGTGCCCTAATCAATTCTTCGCCCGACTGTAGGCGTTGTGTGCAGTCGGCCTAAACTCACTGGGTTCACCCCATAGTCTAGGCACTCATGGCGTGTCCCAAGGTGGACGGGATACGCTGAAGTCAATTTTGAAAGTGAG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.39, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //