Array 1 578549-577851 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT727681.1 Virgibacillus pantothenticus strain Marseille-P1102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 578548 32 100.0 34 ................................ GCTAACGATAAATCAATGTTAGCATATGAATCAG 578482 32 100.0 36 ................................ GCCAAACATGTCGGTAAAACGTTGGGCATTGCCCGT 578414 32 100.0 34 ................................ TTGCTTACTTTGCATGTTTAAATCCAACTATTAT 578348 32 100.0 34 ................................ TCACATAGTATAAGCCGTCATCATCTTCTAAGAT 578282 32 100.0 34 ................................ CCGACATGTTCTTTAATTCGAGCATTTTAACTTG 578216 32 100.0 37 ................................ CAAGTTGCTCACTTGGTTGGAGCTGGTCAAATGGGAT 578147 32 100.0 34 ................................ TACGCCGGTGCTATCCAAATCCACCTTAATGATC 578081 32 100.0 34 ................................ GCTAAAAGGTAACGGATTATAACCAAACACAATA 578015 32 100.0 35 ................................ CATCTAAAACATCTCCTTTTTTTTTAAATTTTAAT 577948 32 100.0 34 ................................ AACATCTATTTTTTGATAGTCCGAAAAAGTCAGC 577882 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 11 32 100.0 35 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TAGATGAGTATCCACCATTTTTATGGAAGTAGGCGAAAAAAATGTTAGTACTAGTTACATATGATGTCAACACATCAAGTAATGGTGGCCGAAAGCGGTTACGTAAAGTGTCGAAAGTATGTCAAAATTATGGGCAGAGAGTGCAGAATTCAGTTTTTGAATGTATTGTAGACGATGCACAGTTCGCTGCTTTAAAAATTCAGCTAACAGGATTAATAGATGAGGAAAAGGATAGCTTACGCTTTTACCGATTAGGAAATAACTACAAAACAAAAGTAGAACATATTGGTACAAAGGAAGCAATTAACTTAGAGGATCCCTTAATTTTTTAGTGCGAACCCCAAGTGTACATGAATTCCCCGGGGGATTCGCACCAGTTAAATGGAATAATATAGGTAATTTTTTAGGAGGATTAGTTAATTCAAATTTAAAATGACTTTATTTTTGCCCATAAATTTCACAAAAATCCATAAAATAGGAGTTTATGAGCAAAAATCGCT # Right flank : TGCAGATTTTGTAACCAATTAATCAGGCTAGGTGAATGGTTAGCCTGATTTACATTTGATATTTTTTCTAATGGCTTTATATTTTCTGAGTGGCACACTTCCAACTCCTAGGAATAGGGCCATTTTTCTTTTAGCATGTCCATAAATATTGCTACATTTTGTTTACTTTTCATAATAGGTGAGTAAACGCAGGAAAACATTCGTTTGAAATGGATGTCCTTGAGCTGTAAAGTGGTGAGCTGCTCCAATTGCACATCTCGTTCTATAACACTATGAGACAATAATGACAGTCCCATTCCCTTAATCACGCTTTCTTTTACTCCCTGATTGCTACTGATCGTGAGAAATGATTTAACTTGTAATCCGTTGGAACGAATCACATGCTCTAAATATTCCCGGGTCCCAGACCCCTCCTCACGGGAAATCCATGATTGATTTTGCAAATCTGAAGTGGTTATCTCTTCTTTTTGAGATAGTTCATGGGAAACAGGTGCAACTAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 586974-587804 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT727681.1 Virgibacillus pantothenticus strain Marseille-P1102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 586974 32 100.0 34 ................................ GACTATAGAAAAATCCTGGAGGAAATGAACGAAC 587040 32 100.0 34 ................................ CTTTATCCACAGTTTTAAGCCTAAACCTGTGTTG 587106 32 100.0 34 ................................ ACAACATTGTGGTAAACCCGGAAGATAAAAGATT 587172 32 100.0 33 ................................ ACAACCCTTCTTTAGAGCATACTATATTTTTTG 587237 32 100.0 34 ................................ TCTTTATACGCAACAACAGCTTGTTTACATTTTT 587303 32 100.0 36 ................................ CTTTTCAAGAGATTTTGTAACATATCCTGTAAGACA 587371 32 100.0 35 ................................ TGCCATTTCGGAGGTATCTGATATGACAAAAACGT 587438 32 100.0 34 ................................ CAGTGCATACAGCCTTAATGCCTTTTAAGCCCTC 587504 32 100.0 34 ................................ GAAGTATACACGGTGATTATATCAGAATTACAGT 587570 32 100.0 36 ................................ TCCTAACACAACACCTTTTACGTAAAATGACCCCAT 587638 32 100.0 35 ................................ AACAAAAAGAGTTGCAAATCACTGGTGGACCACAA 587705 32 100.0 35 ................................ AGTCCTTTTCCCTCTCTAGCACCCGTGTATATCTG 587772 32 78.1 0 ...............A...TT...C.CT...G | G [587794] ========== ====== ====== ====== ================================ ==================================== ================== 13 32 98.3 35 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : AAATGCTTCATACCTATTGGCTCGCCGTACTGCTCAGCCAATTCCTTCACCTCTAACAGATGATCTTTTACTGTTTGTACTTCGCTGTCACTTTGTCGAATATGCGCAATAAAATCCAAGTAATCACAGCCCATCATTAATATTTTATTCGCGTTAGATAGGAAAATAATGTCATACTGTTCTTAGGTAAATTGTATCATAAACTATTTCTGTTTACTATGTAAGAATAAGTATATATCACTGATTTTTTTTTTTGCTAGAAAACTATAAAATTATTGAAATCCTTCTAAACTGTAATACAATAATTATTAGAAAGACTTATTACATTTTAGTGCGAACCCCAAGTGCACATGAATTTCCCGGGGGATTCGCACCATTTAAATGGAATAATATAGGTGATTTTTTAGGAAGGTTTGCTAATTCAAATTTAAAATGACTTTATTTTTGCCCATAGATATCAAAAAAATCCATAAAATGGGATTTTATGAGCAAAAATCGCT # Right flank : GATGATTTCCACCTTTTACCAAAGAAGATGGATTCAGATCTGAGAAAAATATCCATCCTCTTGAATTACTCTCTAGCCATTTCTGATGCTTGAAAAATGCCTCATTCATTTTTGGATTCACCCAAAACACACTTTCCCTTCTGTCCACCCTTTAGATTCGTAACAATATTTTTTGTCATTTAACTCATCAATTAGGCTAATGATCAAGTTAATATTTAAAATAATACCTTATTCTAAAGCTTTGGTTTTACAATTCACCATTGAAGCAATTTTTAATTAGTTGTTACATATAAGCAGGCTCCTGATAAGTGCTTAATAAAAGAGAAAAACAGACTAATATGGTATGGAGAGACTTATAAGTAAACAAAAACCTTAAGTATTGTCTTCACATAACATAGATACCAATAATAAATTCGAAACTAAATCCCTCTTTAAAACGTACAACGTAATACATGGATAGGAATGAATTCCAAACAAATCCATGCCACATTTTATTTCAA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1867409-1867771 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT727682.1 Virgibacillus pantothenticus strain Marseille-P1102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1867409 32 100.0 35 ................................ TATCCTGTAACCGAAGTGTTCAGAATGTATACGAC 1867476 32 100.0 33 ................................ ACCTGTGTCCGGGTCAATGAGTTTTCCGTCATT 1867541 32 100.0 35 ................................ TTGCTCTTTTACTCGGTAGTAATCATCTACCAACA 1867608 32 100.0 34 ................................ CTTCTTCCACTCGTCCGACAAACGGTAATGCAAC 1867674 32 100.0 34 ................................ TTTGCCTTTTTCAATGTTTATGTCAAATTGCTTT 1867740 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 100.0 34 GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Left flank : GATTTTTGGAAAGCGTGGACTGTTGCTCAGTAAAAATATCATATTCTTTTGGTTGATTAATGATAGCCATATTTGTATATTTTTGCAGGTTTAATTTATCTATGATGGACAACTGGTTGCACTCCTTTTTATACCTTTTATAGGGTGGATAAAAGCATGATGAAAAGACATTAGTATTTTTAATTTTCCTTATGTTTTCAACATTATTCGCTATAAGTTGTCACAAACTATTGCATCTTTTCATATTACTTTTGAATAAACCCCTTATTTTTACTTTATGATATTATTTACAGAAAGACAAACCTTTATTTTTCATATCAATTAAACGTTGGTGCGAACCTGAAGTGCACATAAAAACCCTAGGGGATTCGCACCAAAATTCTTTTGTATTTTTCAATAATTTAACATAAAATAGAAGTTATAATCGTATTTATATATAATAAACGAAATAATGTATATAAAAAATAATATTTTTTGTAAATATTTAGGTATAAATCACT # Right flank : TGTTTTCTTTAATATATTTTTTAACTCACAACCGGAGTCGCACCTTGTTGAGCACAAATTCATTTTTATTTTTAGTTAGGAAATGTCTGTACTATGTTACAATGCTTGCTACCTGAGACAAATCTCTGCCAGAATATCATATCTTCTTCAGCCAAATTATATTTCTTGAGCAATTTTCATAAATAATTGGATTAAAGGAGATAGATCTTCATTATTCCACGCAATAATAGAATTCAGTGTTTCAGTACAATGATTTATTGGAACAAAAGCAACATCTTCTCGTCTAAAATAATTCAACATTTCTGGTAAAATAGCTACTCCCATATTCGCAGCAACCAATGGAATTACTGTTTGTAACTCATACGTTTTTTTACGTATTCGGGGACTAAAACCAGCGTTTTGTAAAATGGAAATAACTTTATCGTAATATACAGACCCTATCTCACGCGGCGTCATAATAAATAATTCTTCCCTTAAATCAAATAAATCAATCCCCTCAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1943569-1943865 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT727682.1 Virgibacillus pantothenticus strain Marseille-P1102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1943569 32 100.0 35 ................................ TTTGTAAGCCGTAACCATGTCGCGTATTATGTCTT 1943636 32 100.0 34 ................................ TTATCGTCTCCACGTTACCGGCAACCAACGCCTC 1943702 32 100.0 34 ................................ TCTTTCGTCAGCTGGGCTTCTTTTCCCCGGTGTA 1943768 32 100.0 34 ................................ TAAATCTGTCCTGTCCCCATCTGTGTAGTCAGCA 1943834 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 5 32 100.0 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : CGAACAAGGAAAAAACGAACCATCTATTGAAACTATCAGAACACTAGCAAAGTTGTTCGACGTCTCCACAGATTATTTACTAGGTCTGATTGATCAACCCAAACACCCCATAATTTTTACTATAAAAGATGATTTCACATTAACGGAGTCAGAATTGCAAACCGTCAAACAAATGAAAGAGCAGCAGCTACTAAGTGAATTAAGTGAGAATCCTGTTGAAAATGTGGAAAAACTGACGAAGCTTTGGAAATTTATTAATGAGTTGTAAGGATCGGTGCGAGGTTACAGAGTTTAAAACTAACTATTTGGTTAAAATTATTTGATTGTTTTGGTGCGAACCTGAAGTGCACATAAAAACACAGGGGGATTCGCACCATTATTTCATTGTTTTTTGTTAATATTTGGAATAAAATATATGGTATTAACATTGGTTTATAATATTTTTCTTTTTAATGGGTCATTTTTTAATGTTTTTTGTAAACTTTTAGGAAAAAATCGCT # Right flank : TGCGTCAACATTAATTTCGCTCATATCGTTAACAATAATGGCTATTTTTAACCCTTTCTGATTTTCAAGAAGATGAGCAGAGATGTTTTACCTGCTCCTAGAAAACCACTTAAAACGGTCACTAGTATTTTTTTACTCATTGATCTTCCCTCCTCTATCATGATCCATATATGCCCGACTAGGTGTAGCGCCTTCTTGAAATAAATACTTTCCACTATACCTTCTGTAGCTTGATCAACTTGCGCTATTACCAGTTGGCAAACTCGATACCAACTTTCAATTGAACAGGGACTCGATTTGCATTAAATAATTCTAAAGTGTTTTGCCCAGAGAAGCCCGGATAGATCCACCCAGCATTTTGAATAAAGACACCAAATCTGCCGATAGAACTTCTCCCTTCAACAAAGGCTGTTAAATCGTTTGGTAAACGAATTAGCTCTAATGTTGTTCCTAACATAAACGTGTTAGGCGGAATCGTGACGACTTTCTCATCTGTCACT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2042102-2043462 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT727682.1 Virgibacillus pantothenticus strain Marseille-P1102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2042102 32 100.0 33 ................................ AACTCATTAACGAGACTTTTTAACTCATGTATT 2042167 32 100.0 33 ................................ TGACCATCAATATAAAATTTAGCATTTTCTAAA 2042232 32 100.0 35 ................................ GGGAAACTACCGGTGTTAGGTTTAACATCGAATAT 2042299 32 100.0 36 ................................ GCCTTTAAGTATTCGGTAAATGTCGTTACGTTCCAT 2042367 32 100.0 36 ................................ CGCTATCTGATCTGCCTGGTATCTTTGAAGTAGCGT 2042435 32 100.0 35 ................................ AGGTTCATTGCTCGGTACTAGTGACCTCATCTTTG 2042502 32 100.0 34 ................................ TTACTGTTTAATAATAAATTTCTAGCGCCTACGT 2042568 32 100.0 34 ................................ TTACTGTTTAATAATAAATTTCTAGCGCCTACGT 2042634 32 100.0 35 ................................ CTTTTTTCTTTTAGCATCAATTACCACTACTAACC 2042701 32 100.0 36 ................................ AACATGATGACGAAAAAACGAATCCCTCCATACGCC 2042769 32 100.0 36 ................................ AACAATTCGGCATGATTGCTATTGATGAAAAATCAT 2042837 32 100.0 33 ................................ TGTTTTGTAATTAATTTCCCGAGGTTTATTAAT 2042902 32 100.0 33 ................................ TCCAACATGATTTGACAATATTGCATATCTGCC 2042967 32 100.0 35 ................................ GAATCCTGCCGGGGGCGTATTTTGGTTGTTTTGGG 2043034 32 100.0 33 ................................ CGTTGTAACATGGATATTTCTTTCGCCATGTCT 2043099 32 100.0 35 ................................ CTCGCCATGTCGTCCATTGCTTTATTGATAATCTT 2043166 32 100.0 32 ................................ GCGTATGTTCGCGCGGAAAGATTAAGAGTTGT 2043230 32 100.0 36 ................................ ACCTCTTGCGTTAGGTGAAACAACTACTGTAGTATC 2043298 32 100.0 35 ................................ TCGATTGGTGAACTTCTTACGTGCATTAAAATGTA 2043365 32 100.0 34 ................................ AATTAAAGCGTGAAATGTATTTTGCTTAGTAGCT 2043431 32 90.6 0 ....T....TA..................... | ========== ====== ====== ====== ================================ ==================================== ================== 21 32 99.6 34 GTCGCACCTCGTATAGGTGCGTGGATTGAAAT # Left flank : AATACAATTATATTGAAAATAAAGGATACACCATTGACAAGAGGTACGGTGAATTAATACCAATTCTTCCTAATGATGAGCTAAAAAAAATCCTGCAATTGCAGGATAATCAACCATTGCTATTTTTAAAAGCTTTTACAGTGTTTGAAGATGGGCAGCCCTTTGAGTATTCTAAAGTATATTACCACCCGAAAAAATACTCCTTTAAATTTATCTCAGAAAAGAATCATTAACTAGGTAGTTATTCTTTTGTTGATTTTATCATAGTTAAGTGATCTTTATTTTAAACTGCTGTATAATTGATATGTAAAATTAACATGAGCTTATTTTAGTGCGAACCTGAAGTGCACATGAAAACCCCGGGGGATTCGCACCTCTATTTAACCATTTTATGGGAATATATGTAATGAAAATAACGATTATTTAAGCGTTATTATTGATTTTCTCTTTAAAATAAGCATTTTTATACGACTTTTGTAAATTTTTAGGGAGAAATCGCA # Right flank : TTCATCAATATCGGTTGCTTGTACAGTTATCTTTTTGTTGGATAGGTTACACTTGACTAGACAAAAAAATTAAGGTGAAGTAGACTAGACGGAATATAATAATGGTTCATGATAAAAAAGGAAATTAATCATACAAAGTGTCTTTACCCGGAGAAGCAGGCATGGTACCCTGCTTCAAATACTATTTCTTTTATTTAACATCCAAACTTTTCAACTCACCACATAGTATGGACAAAAAGGATAAGGCTAGAAGCGGATATCGTCTAAAGACGGAGGAATTAGACCACTCGTTTGTAAGTTAAATCAATCAATTTTTAGTTCACATTACATCACAATCTATATCGTAATTATTATAAACATTAATTTAAAATGGTTAACAACAAATAAATTCTTGATCTTTTTATTAATCATAATCATGTAATATTGACCGTTAACCCCGCTTTTGCACGCTTCAATCATTTTGCTATAGTTCACGCAATATAGCCGTTTTCCATATCAGG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCGTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.90,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2050953-2051653 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT727682.1 Virgibacillus pantothenticus strain Marseille-P1102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2050953 32 100.0 35 ................................ AGTTACTCCCGTCCACTTAGAACGGAAGTTCCAAA 2051020 32 100.0 33 ................................ CTTTTGACGTAAACATGTCAAACCAATCGTCCA 2051085 32 100.0 34 ................................ TTTAAAAACTAGATAACGCCAATCCCCTATCAGA 2051151 32 100.0 35 ................................ TCTTAATAATGATGATCAGCGCTTTCTGTGGTCAC 2051218 32 100.0 35 ................................ GAAGAGTTATCTGAATCACAACAAAAGACAGTGGA 2051285 32 100.0 36 ................................ AGACACTGGTAAAAGATTTGAGATGGATAAGGATAT 2051353 32 100.0 35 ................................ CATTTCCAATGTCCTTAGCGACTGATTAATGGCTG 2051420 32 100.0 34 ................................ CGTAGAGACGGAGACACCTTATATTTCGATTTTT 2051486 32 100.0 36 ................................ GAAGAACGGTGTATCGAACTAATCGGAAATTATCTC 2051554 32 100.0 36 ................................ CTTGGATGATTTGCTTATCAAAAACATTAGTATTTC 2051622 32 96.9 0 ............T................... | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 99.7 35 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TGGTTCATTGCTAGTATCCTCCCTATAAATATCTTCTTTTTCTAACAACTTCAGTTTACACGGTATTAATCGACAAATTAATACCGCTTTTTTCATTAAAAGATGAAAATAACCGTATTAATTCACTGTTTTATTTTAGGTTATATAATGTTGCTTGGAAGAAATCATTTGCTGTAAAAGCCAAATGTTTTACCATTGAATGAAAGTTCAATCGTTTTCAATTATATCACCGAGGTCTTAATAAAATTCTATTACACCTTAAATGACTAATTATGAATTATGTCTTATAATGAATACAGAATTATTAATGCCATTTCAGTTGATTTTTTTGGTGCGAACCCCAAGCGCACATAAAAACCCCGGGGGATTCGCACCAAAATTCACTTGTTTTTGTGGTAATATATGTAATATAATTCAACACAATTAGCATTATTTACGATTCCAAGCTAAAAATATGCTGTTTTTTGATTGTTTTTGTTAATTTTTAGGAAGAAATCGCA # Right flank : TGAAACACTTATGTTCACTGTGGCATTTTCGAGTCGTCGCACCTTACATAAATGCAACAAGTTATTATATTAAATACAGAAAAAGCCACACCTATATAAAGTGCGACTTTTCTCCTCAATAAGCATGGAACATTGCTTGTATTTCTGACAAATCATCTGTCAAAGTAAGGGCTAACATTAGCAATATTCTAGCCTTTTGCGGTGACAAATTATCTGCGGTTATAAAAGGAAAAGCATCAAAACTTTCAATAGGCACAACCCGGCCTTCAAAGCACCGACTACTTCTGACCACTACCATCCCTTTTTGGCTGGCCTTTTTTAGCGATTCCTCCTCTTTTGGTGAACACCTTCCCGCGCCCGTCCCAGCTAATACAATTCCAGAATACTTCTCACTAGTAACAATCAAATTAATAATATCTCCGGATACACCAGCATGCGAATACACAATGGCCACCTCAGGCAAGTTGTCTAATCTACTGTCATTAAACTTGGATTGAAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 2057251-2057690 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT727682.1 Virgibacillus pantothenticus strain Marseille-P1102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 2057251 32 100.0 36 ................................ TTTTGCTCTTGTGCTTGATATTCTTCCAACTTATCC 2057319 32 100.0 35 ................................ CTTTTGCTCCAGAACCAATTCCGCCAGCAGCTTTA 2057386 32 100.0 35 ................................ ATATCTGTTATATCGTCTTCAAGATAAAAATTACC 2057453 32 100.0 35 ................................ ACATGTACGAAACAGCGAAGACAGTGCGTGTAATG 2057520 32 100.0 38 ................................ CGTATCGCCCCACACTAACTCCCGCACCTCCATCGCAC 2057590 32 100.0 37 ................................ CCACCAATCGTATCTTTCACGTGATCTTGCATCGCTC 2057659 32 96.9 0 ..........A..................... | ========== ====== ====== ====== ================================ ====================================== ================== 7 32 99.6 36 GTCGCACCTTTTATAGGTGCGTGGATTGAAAT # Left flank : CTTTGCTAATGATCCAGAATTAGAACTTTGGTATAGAGAATTACCAAGCAATGGAGAGAAGGATTTGCATCGACTTAAAAAGATTTGGGATGTTTTTAAAGAGGAATAAAACAGGTGTAGAAAAATTTCTTCATTTAGAGCTTATGAGGAAATTTTCTATTGGAAGTTCGTTCCAAAAAGAAGTTCAGAAAGTTTCCTAAGCTCAGGGCCATTCTTCGGGATTTATATAATACGCCAACTATAAATTTCTAAAGATAACCAAAACTTACATGACCGCCTTTGGGCATACATTAATTTGTTCTATATAATAGTATTTTTACATAATATACTTGGTGCGAACCCCAAGTGCACATAAAAGCCCCAGGGATTCGCACCAAAAATCGCTTGCTTTTTATGGTGGTTTTTGTAATAAAGTTGAAGATAATTAGTAATATTTAAGATTTTTTATCTAAAATGGGCTTTTTTTGATTGTTTTTGTTAATTTTTAGGAAGAAATCGCA # Right flank : TTGTCGTTGTTGCTCGGCTATTTTCACCTGGCGTTCGTCGCACCTTATATAGATACAACAAGCTCAGAAGAAATGAAATCGCTTGCGCACACCCTATTGCTACCAAATCTCTAAAAGACATGAACCAAATAACCTAACGGAGGCGCGTATGTTTATTTATATCCTTATGTCTTTAAGTATCATTATCCTAACCGTCATAATTAGCGTTCTTTGGCTAATTTCATGGTCAAAAAAGCCTGATGCAGATTACGTTTTAAAATTTATAGCTAAAAATCCGCAAAGATCTTCCTTAATAATTATAAAGAACGGAAAATCGCTCGCAAACGTTAACGCGAATGAACGAAAACCATTAGCTAGCACGGTAAAAATCATGATTGCCATTGAATTTTCCCAACAAGCGGCTAATGGTAGCATAAACCCAGACGAAAAAGTTCATCTTGATGATCTCGCTCGTTTTTACGTATCTCACACTGATGGAGGCGCGCATGAAAAATGGTTAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTTTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //