Array 1 145032-146219 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWGR010000005.1 Micromonospora sp. DH13 NODE_5_length_307900_cov_19.603234/1-307900, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 145032 28 100.0 33 ............................ CAGGCCGTCGTCGCCGCAGCAGCCGCCGTCGGT 145093 28 100.0 33 ............................ CGACTACGAGCGGGTCGCTATGTTCGCCGTAGT 145154 28 100.0 33 ............................ GTCGATCGGTGTCATCGACTTCGTCGTTAAGGG 145215 28 100.0 33 ............................ TGGCCGGCATCTTGGCCTGCAACACCGCCAGGT 145276 28 100.0 33 ............................ ATGCCTAGGGGGCAGCCTGCCGCGCATCACCAC 145337 28 100.0 33 ............................ GAATGCTAGCCCCGCGTACATCAAGTGCGATCG 145398 28 100.0 33 ............................ CGGAGGCCTGCCGTGGCGTTCAGCGACGAGCAG 145459 28 100.0 33 ............................ CGCGGAGCCGGAGAAGACCATCATCCGGGTGTC 145520 28 100.0 33 ............................ CAGGGCCAGCGCGATCGGCGAGGCGGTGCCCAG 145581 28 100.0 33 ............................ CTTGCCACGGTCACCGGCGCATTCGGGAAGATC 145642 28 100.0 33 ............................ GTCACCGTGGCCGGCGACCACCGCGCAGCTCGG 145703 28 100.0 33 ............................ GTACGGCGCGGACTGGTGGACGTTCGATGAGAC 145764 28 100.0 33 ............................ GTACGCGGGCGACCCCTCGGCCCCGTCGTGCGA 145825 28 100.0 33 ............................ GACGAGGCGGTGATCCCACTGTCCAAGCTCGCG 145886 28 100.0 33 ............................ CCAGGGAGGCGCGGCCGTGTCGTCGCTCCATCG 145947 28 100.0 33 ............................ CCACGCCTGGTAGTCGATGCCGCCGTCGCGCAG 146008 28 100.0 33 ............................ GGCGTACAAGGACGCCGACGGGCAGGGCAAGAA 146069 28 100.0 33 ............................ CACGCCGTCGGGGTCGGGGATCGGCGCGTAGTG 146130 28 96.4 34 ............T............... CTAGATTGCGCCCCAGTCCACCGGGACGGTCTGG 146192 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================== ================== 20 28 99.6 33 CTGTTCCCCGCGCACGCGGGGGTGATCC # Left flank : GCGACGTGCCGTCACTCTGGACACGGCCCAACGCCTGCATACCTCCGACTCGGGAGGCAGCGCCGCTCCGGGTGCTAGCTCCCCGGCTTGGATCGACTCTCGCAGGGTCTGGGCGATCTCGCGATAGCCGGCACCTGGGATGCCTCCGGTCTTCACAGGTCTCCTCGCTGTCGTCGGGTGCATAGATCAGGCTATGCACCCGACGACTGGGCGGCCACCTTCCGGCGCGCTCGCCGGGCGGGTGAGGTGTGACCCGCGTGCCGTATTCGTGTCTCGTGTCCGAGATCACCAGCGTTCGCGCTGGTCAGCGTCCTGAATGACGTGGGATTCCGCTCTTCGGCCGCCGCGCGGCTGTGCGGTCACCGGGGCGCGGGGCGCGCGAAGCGCGGCGAGTCAGCGGTACCTTGTCACCATCAACCGAGCGGCGCGGCGGAGGGATCTTGGTCGGGCAAGTGAATGAAATCGGCATTGTTGATCTTTAGCGGTCCAGGTCAGGAAGT # Right flank : CGGACTACACGTCCGGGGCGACCGAAGGTGAGCGCTGTTCTCCGCGCTCTACCTTCGTTCCCTCCATGTCGTGTATGTGTCGGCTGTCGCCGATCAGGTTTCGTTGGTGCAGGTCAGCCCCGTGTGACTCTCGGTCTTGAAAACCGGTAAGGCAGCGATGTCTTCGTGGGTTCGAATCCCACACCCTCCGCCTCCTGAGCAGCGGAAACACCCATGAAGGGGTGCCGAGGCACGATGTGGTGGCCCGCCATATCGCGGTATGGTGATTGTATGGCTTCTAGGAAGATCACCGTCACCCTCCCCGAAGAGTTGGTCGAAGCGCTCGGCGCGGCCGCTAGTGAGGATGGGGTGCCGCTGTCGAGGCTGGTCGCCAGCGCAGCGGAGAGCGAACTCCGGCGGCGGGTGGGTCGACGGTTGGTCGCGGAGTGGCAAGCCGAGCATGGAGCGTTCACGGTGGAGGAACTCGCCGCAGCGCGCGCCGAGATGGCCGCCGCCGACGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 185974-183808 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWGR010000007.1 Micromonospora sp. DH13 NODE_7_length_266582_cov_17.896872/1-266582, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 185973 28 100.0 33 ............................ GAATAAGGGAAGCTTTGGGGCCCGCACGCATAA 185912 28 100.0 33 ............................ CAGGTTTCCCCTCCCTGGCGCACCTGACTAACG 185851 28 100.0 33 ............................ GCCGTACCGCGTCTACCTGGGCGGGCCGGACGA 185790 28 100.0 33 ............................ CCCCGATCCGAAGTCAAGGGAGTTGCAAACAGC 185729 28 100.0 33 ............................ CGCCGGCACGGCCGGGTCGGGCGTGGTCAAGAC 185668 28 100.0 33 ............................ TCCATGAGCATGCCGACCTGTGCACTAAGCGAC 185607 28 100.0 33 ............................ GTTGCCGCGGCCGACGGTCTCGCTGCCCTCGGC 185546 28 100.0 33 ............................ CGACCTTTATGATCCTGCCACTAACGCGAGAGT 185485 28 100.0 33 ............................ CTGGAAAGGCGTTCGGGTAGCAGCGTCGCACTT 185424 28 100.0 33 ............................ CGTCCGCCGATCCCAGTTCGGCAAACACGACAA 185363 28 100.0 33 ............................ CGGCCGCCAGCACCGCCGCGATCCGGATCTGCT 185302 28 100.0 33 ............................ CGGTGGCGATGAGGCTGACGAACTGACGAAAAC 185241 28 100.0 33 ............................ CCGGTGTTGATCGTGCCGGAGTCGTCCGTCTTG 185180 28 100.0 33 ............................ ATCCCGTACGGTCATTCGTACGGAACCCCGTAC 185119 28 100.0 33 ............................ CCGGGTTCCGCGCCCTCTGTCGCAGAGAGGAAC 185058 28 100.0 33 ............................ CGAGCGGCGCGCGCTGGCCGGCGACGGGCAGGT 184997 28 100.0 33 ............................ CGGGATCACCAAAGAGCATCCGGCGGGCACCCG 184936 28 100.0 34 ............................ CGCGACCGGGCCGGTCGGGAAGTGCGTGATCCTG 184874 28 100.0 33 ............................ CCCGGACCAGCAGGTGCCGGTGGGCGACTGGCT 184813 28 100.0 33 ............................ GCCGTCGGCGATCTCGCTGTCGGTGTGCCCCTT 184752 28 100.0 33 ............................ CTGTGCAAGATGCTGTTGCGCGGTGGAGCTAAG 184691 28 100.0 33 ............................ CCCCATTGGACTGATCATCATTGGGATTGTGGC 184630 28 100.0 33 ............................ CCCAGGGAGCACCTTGTCCAGGCCGGCGGAGAC 184569 28 100.0 33 ............................ CGGGGCGACCCTCGACGAGGGGACGGAGAAGGG 184508 28 100.0 33 ............................ CAGCCCGGCGAACTCCAGCTCGAAGTCGGTGTC 184447 28 100.0 33 ............................ CTCCCAATCGCCGCGATCGCGGGTGATCGTGAC 184386 28 100.0 33 ............................ CTGGCCTTGGGCGTCGTAGACGTTGATGCCCAG 184325 28 100.0 33 ............................ CTTGTCGAGCTGCTCGGTGTAGCCCTCGACGAG 184264 28 96.4 33 ......G..................... GGGCGTCATCGTCGCCTGCCTGGGGAAGAAGCG 184203 28 100.0 33 ............................ CCTCCTGGCCGCCGCACTCAACCCGCCGACGCC 184142 28 100.0 33 ............................ CGGCTCCCAGATCGGCGGCGGCCCGGACCGCAG 184081 28 100.0 33 ............................ GGCCAGGCGGCGGGGGTCGGGGATCGTGGTCAT G [184058] 184019 28 100.0 33 ............................ CTGGAAGGGGCTCACCACCGTCAGCGCCCACTT 183958 28 100.0 33 ............................ CGTCATCGACAGCGACGCCGGACAGCCGATGCG 183897 28 96.4 33 ...............A............ GCTGATCTTCGACGTGTCCGCGACGTGGCTGGG T [183886] 183835 28 92.9 0 .........A...............C.. | ========== ====== ====== ====== ============================ ================================== ================== 36 28 99.6 33 CTGCTCCCCGCGCATGCGGGGGTGATCC # Left flank : GGGCAACGGCGCAGCGATGGGCCGCCGGACACTTTCCGGCAGCCACATGTCCCACAGCAGGCCGGCGACATCGGCACTGTCGGCGAGGTGACGATGCAGCGGAAGCCAGAAGCCCCGATCGCGGTTCGTCTTGCCCCAGACAAGACGGGCACTCTCGCTGAGACCAGGTCGATCGGGCACGGAGGAGATGAGAACAGAGGGGTACGACACCTGACGACCTACTTCCAGGGACGACTCACAGACCGACCACGCGGCCGCTTTCAGCATCGAGAACGACGCTCATATACGCCCGGACGCGGCCTGGCTGGAGATCGAGCAAGATTAATCCGGTCGCCGGAACCCCTCCCCGTCGGACGCCCTCGCGGAGATTCCATCGGTACGCTGATCCGGCTGCGACTCACACCAACCCAACCGGCGCGCTCGATTCCAACAGCGATGGCCTTGAGAGGCAAGTGAACGAAAACCAGGAAGTTGATCTTTAGCATCGCAGGTCAGAAAGC # Right flank : TGCGGCACTCGTCGTTCGGCATCCGGCCTGGCCGCGCTACCCCGCGCACCACCGTGCTTGCGCCTAGTTGCTGCTAGCGCTCGGCGACGAAGACACCTCGGCCGGGGCGGCCCACCAGGACGCCCCGCTTCCGCAGCGTCGCCCAAGCCCGGTTGATGGTCGACAGCGACACGTCGTACTCGTCGGCCAGCACATGACCGGGCGGCAACTGGGCACCACGAGGCCACTCCCCCTCGTCGATTCGCCTGACGAGATCCTCCAGCAGTTCGTTCATGGTGGGCGGGATAGGCACGAGCACCCCTTGCAGTCGGTTGGCTTTGCCAGTATCGATCCACCTCCTGAGACAGGCAAAACACCTAAGCCATTTGGCAGTGCTGACATAGGTGAGGACACTGCGACTGCTCTTGACATTGCTTCGAAGGGTCCGTACGGTCGCTTTCAGTGACGCGGCGCCTGCGGTCGGTTGGCGCTTGCCGTGGTGGTGGCCCGTCCCGTCAGCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 195773-196472 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWGR010000007.1 Micromonospora sp. DH13 NODE_7_length_266582_cov_17.896872/1-266582, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 195773 29 96.6 32 ............................G GGCACGCGTCATGATGGGTTGGCGGGACATGG 195834 29 100.0 32 ............................. ATCAGCGGCCCCGGCCTGTCGAGGGAGACCCT 195895 29 100.0 32 ............................. CCGGTCGCGAAGCGGGTCAAGGTGTCCCGCAA 195956 29 100.0 32 ............................. CCGGTCGCGAAGCGGGTCAAGGTGTCCCGCAA 196017 29 96.6 32 ............................G CCGCCGCACTTGGCTTGGTCGGCGATGCGCCA 196078 29 100.0 32 ............................. CGGATTTCCAGCTCGTACGCGTCTTCGGCGAG 196139 29 96.6 32 ............................G GAAGACGCGCCGTTCTCGTGGATCAGCACCGT 196200 29 100.0 32 ............................. GGGCGCATGACAGCCACCGGGGCGATCGGGTC 196261 29 100.0 32 ............................. GATCAGCCGGCCACCGTGCACGAGATGGAGGC 196322 29 100.0 32 ............................. AGGACCAGGGCGACGACGGACGCGCCGCCGTA 196383 29 100.0 32 ............................. CGGCAGATCAACCACATCGAAGCTGCGATCGA 196444 29 86.2 0 .........TT............A...G. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.0 32 CTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : TGTGGGACGAGGAAGGCTACGAACTCGCCGGCGGCCGGAACTACTCCGGGGACGTGGACTTCTGATGACCGTCATCATCCTCACCGCCTGCCCCGAAGGGCTGCGTGGGCACCTGACACAGTGGCTGCTGGAGATCTCTGCCGGGGTGTACGTGGGGCACGTGAACAGCCGGATCCGACAGCGGCTCTGGGCCAAGGTCGTCGAGATGGCCGGGCCAGGCCGGGCACTGCTCGTCTACCAGCGGCCAGGCGAGCAACGACTGACCTTCGAGGTACACGACCATCACTGGGAGCCGGTGGACTTCGACGGGATCACGCTGATGCGTCGGCCTACAGATCGGAGGTCGTACAACCCGGCAGTGGGCCCAGGGTGGAGCAAGGCATCCAAGCGCCGGAGGTTCGGGCGGAGGGCCCCAGATGGGGGCAGCGGATCGTCGGTGCCCTCCGAACAAAGTGAAGGAAAGAGGGGTAGTTGATCTTTAGCATCCCAGCTCAGGAAGT # Right flank : CGGATCTTGAAGGCGACGCCGGACTGGCCGACGGTGGGAGGCGTAGCGGCGATGGTACCGCCCGCAGTACCGTCGGCTCGTGCCGTCCGTAGCCAAGCTCGTTGCAGTGATGCGAAGTAACCAGCAGAACACTGCCTACAACGATCTCTACGCGGTGTGCGAGCACTACTTCGGGAAGCCCCGGCAGGCCGGCACCTCTCACGCGGTGTTCAAGATGCCCTGGGCGGATACCCGCGAGTCAAGATCCAGAACGACAAAGGCAAGGTCAAGGCATACCAGGTACGGCAGGTGCTCAAGGCGATCGACAAGAAGGAGGCCCTGTGATGGACCCCGAAACCCATCTTGACATCACCCACTACACCTACCGCGTCACCTGGTCCGCCGAGGATCGTGAGTTCGTTGCGACCTGTGCCGAGTTCCCGTCGCTCTCCTGGCTCGCGTCGTCGCAGGTCGGCGCGCTTCAAGGGCTTCAGGACCTGCTGCGCGAGGTGATCGCGGAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 681-1684 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWGR010000017.1 Micromonospora sp. DH13 NODE_17_length_148690_cov_16.427156/1-148690, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 681 28 100.0 33 ............................ CTAGCATTTGGCATGCGGGACCCCGACGAACAG 742 28 100.0 33 ............................ CGACCCCGAGGAGTGCCGCCCGGGGCTGTCCAT 803 28 100.0 33 ............................ CGGCCATCGTGACCCCGTTCGTCCCCGGGTCGA 864 28 100.0 33 ............................ CGCGTCGACGCAGCTCATCTCCGAGCGGCTGAT 925 28 100.0 33 ............................ CCCGGTCGATGACGAACAGCTTGCCGAGGTACG 986 28 100.0 33 ............................ CCCCGGAGGGTCGTGCCGTCGTCGAAGGTGACG 1047 28 100.0 33 ............................ CGGGCCCCCGGAGGAAGGGGGCCCGCGCTGAAA 1108 28 100.0 33 ............................ TCGCCATCTCGCCAAGCAGGGATGGCCGGCGGC 1169 28 100.0 33 ............................ CGCGACCAGGTCGATGCGCGCCGGCAGGTTCAG 1230 28 100.0 33 ............................ CCACAGGTCCGCGATCTCGGGCGGACAGAAGCG 1291 27 96.4 33 .................-.......... CAATCCCTTTACGCGCATGGCGTGGTTCTTGCT 1351 28 96.4 34 ..........A................. CACCGTCCGGGCCTGGGTGTCGATGTCGAGCCAC 1413 28 100.0 33 ............................ CCCCGGTCGTCCGGTGGCCGGTCGTATCTTCGG 1474 28 100.0 33 ............................ CGAAGATCACCCCGGACCCTTCGAGCCCTAGGC 1535 28 100.0 33 ............................ CAGCATCGTGTCGATGCTGACGGCCGGCGGGTG 1596 28 100.0 33 ............................ TCAGGCGCTCTACCACCAGCCGGCGGCGACCGG 1657 28 96.4 0 ..........................T. | ========== ====== ====== ====== ============================ ================================== ================== 17 28 99.4 33 CTGTTCCCCGCGCACGCGGGGGTGATCC # Left flank : CACTTCACCGCGGACCGGTCGACGGTCGCCGGGGCGAGTTGCCGAACGGAACACGTCGGCCGCTTCCGGGTCCGGTGTGGGGAAGGAGTGAAGGTGGGTGAAGGGGGCGGCGGGTGGGTGCGGGGTTGGGGTTAGGGCTGCCTCCGGCGGGGGCCCAACGACTCCGGGATGGAGTTGCCGAACGGTTGCGGTCGTGGGTGGTTGGGGTGGGATGCCATCCCGTCCACCGCCGACCCAGGCAGAGCCGAGCAGACCAGGGCCAGGGTGACAAGGTCGTTCGTCCGGTAGGGCGCTCCACCTTGTCACCCTGGCCCTGGCCCGCTCCACGGTGTGTGGGTCGGCGGCGGACGGGATGGCAGGGGCGGGGGCGCGGTGCGCGCCAAGCGCGGCGAGTCAGCGGTACCTTGTCACCAGTAACCGGCGGCACAGGCGGAGGGATCTTGGGCGAGGAAGTGAATGAAATCGGCGCTGTTGATCTTTAGCGGCCCAGGTCAGAAAGT # Right flank : CGGGCAGCACAGAGGCAGCGAAACGGTTGCCAGCCGTTGATGGTGCCCGAGGCTCGACGTGCACCACGGCCACCTGAGCGGCACCAGAAGGCAACGGCTTGCAGCCGATGATGCGCCATGTCGGCGTTCACACCGAAGAGGTCACTGGTTCGATCCCAGTATCGCCCACGCAGATCAAAGGCCACCTTCCATCGATGAAGGTGGCCTTTCTGCTGCCCGTACAGCAGCGAAGCACAGCAGTTCTCGTCAGTGCCCGAGTGACTCACCGAGGCGCTTGAGTGCCTCCCGGGTCGCCGTGGACGAGACCTGGGTGTAGATCTCCATCGTCACCGAGAACCGGGCGTGCCGAAGGATCTGCATGGCAACCCGTGGATGCACGTCGAGGTCGGCCAGGAGGGTGGCACAGGTCCGGCGGGCACGCCGGTTGCCGCACGCCTTGTAGAGCACCCGATCGGGCAACTCATCGGTGTGCTGCTCGGTTAGGACCCGTCCGGTGTCCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 68482-67525 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWGR010000027.1 Micromonospora sp. DH13 NODE_27_length_121188_cov_15.263239/1-121188, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================= ================== 68481 28 100.0 34 ............................ TGAGCGCCATGCCCTTGATAAGACCACCACGGTT 68419 28 100.0 33 ............................ GTCGATCATCGTCTACCCCGTGCGGTCCACGGT 68358 28 100.0 33 ............................ TCTGCGTCACGATCTCCATCTGCGTAGCCGAAG 68297 28 100.0 33 ............................ CAGGGCTCACGATACGCCACAACCGGTAGGTAT 68236 28 100.0 30 ............................ CAGTCTCCCGAGCCGCCGCCGCCGCCGCAG 68178 28 100.0 33 ............................ GAGTGCCTGCACGTCGTGGTCGACCCGGACCAC 68117 28 100.0 33 ............................ TCGCACGGTCGATTCCGTGGCCCCCGCCTGCAT 68056 28 100.0 33 ............................ GAAGGAGATCGAGGCGCTGACCGGCTCGTACCG 67995 28 100.0 33 ............................ CGGCTACGGGTGCGCGCGGGCCAGAGTGCCGAA 67934 28 100.0 33 ............................ CGGCTACGGGTGCGCGCGGGCCAGAGTGCCGAA 67873 28 100.0 33 ............................ CGCCTCCGGCAGCTGGAGCCCCTTGCGGCCGTC 67812 28 100.0 33 ............................ CGTGATCTCGACGTGGGTGCGGGTGTGCGTGCG 67751 28 96.4 33 ..........T................. CGTGCTCCGCCGAGCCCGACCCGGCCGCCCTCG 67690 28 100.0 33 ............................ TAACGCGAACACCGCGTGGGGAACCTGCACCGG 67629 28 100.0 49 ............................ CAGACGGGCGTCTGTCGCCGACAGCGTCCTCGCCGAGCAGGGCGCGGGG 67552 27 85.7 0 .A......A-.....A............ | T [67530] ========== ====== ====== ====== ============================ ================================================= ================== 16 28 98.9 34 CTGTTCCCCGCGCACGCGGGGGTGATCC # Left flank : AGTACAGCCGCGTCTTCGAACACTTGGTCGCCACGGCGGCCGGCGCTCGGGAGTCGCGCGACCTGATCCAGGAGGCGATCGACGGGCTGTGAGAGGACGGCGCGGGTGGAAGAGATCAACCAGGCCTCGGCGACCTGGCGAAAGAGCACCCGCAGCAACGGCTCCGGAGACTGCGTAGAGGTCGCGGGCCTGCCAGGCAAGATCGGCCTCCGCGACAGCAAGGACCCGGCTGGTCCGGTATTGATCTTCGAGCAGGCCCCCTGGGCCGCCTTCATCGAAGGAGTCAAAACGGAAGGGGCCGGCCGCGAGTAACCAACGGTTGAGCCGGCATGAGGCCTGGTGTTACCCCAGCCCTTGCTTAGCCCTCCCGACAGCAAACGGCGTCCAGCCCATCCGTTGCACTCGACCGAACAAGACAGCCGACAGCGGACGAGGTGATCTTGGCAGGCAAAGTGAATGAAATTGACGGAGTTGATCTATAGCGCCGCAGGTCAAGAAGC # Right flank : CTTGACCGTCAACTGGCCGGGCCCGCCGGGCCCCTGCTCACCGCGCACGGGCCAAGGCAGTCCTGTCGTCGAAACTTGCCCGGCTCACCCATCAACGCGCGATATCCACGGCAGGGGAGAATGGCATCATGCAAGGCGTCCCCGACGAGAGGTGGAACAGTGTCTCGAACCATCATTGTTGCCGATGACCAACCGCTCGGGGAGGCGGCGAAGATCCTCGGCGCTACCATCAAGAGGATCACCACTAGCGCGGCGCTGAAGTCGGCGGTCGACCGAAAAAAGCGTCGGGAGTTCGCCGACTGGCTCAAGAGCGGCGGCCTTCCCGGCTTGGCAGAACCGGTCGTCGGCGAACGGAACAACGCGTGAGTCACGTGAGCCTCCCCCCTGCGCGACAAGTCGACATTGGCCCACTAGCCGAAGCTGGCCGCACACGCCTCGCCTTTGGGCACCGAGGTCATCGGAACATGCGATCCTGCCCAACGAAGTGAATGAAGTCCGTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //