Array 1 1250190-1252452 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065980.1 Staphylococcus felis strain FDAARGOS_1014 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1250190 36 88.9 29 ..........CGC......A................ ATAAGCATGTGACTAAGAAAAGAGGAATA 1250255 36 94.4 28 A........................G.......... AATGTGGAATGCACTACAACATTAGCGG 1250319 36 94.4 30 ........G.............A............. ATGCCGGACTAATTGCTGAAGATGTTGAAT 1250385 36 97.2 30 .........................G.......... ATACGCGCTTATTAAAAGTATAGGGTTATT 1250451 36 94.4 30 ........G................G.......... ATTTGTACGTTCGAATACAACGGCTACGTC 1250517 36 100.0 30 .................................... TACAGCTGAATTTATGCCTGCAGAAGTTGA 1250583 36 100.0 29 .................................... TTATGCCCTTGTTTAAATGGTCGTCACAG 1250648 36 100.0 30 .................................... TTCGCTAAAAGCTGTTATAACTGATATGAT 1250714 36 100.0 29 .................................... AAGAAATGACGTTACCAGAGTTGATTGAG 1250779 36 97.2 30 .........................G.......... TATTTTGTATTAATTCTTTACTACTGTTGT 1250845 36 97.2 30 .........................G.......... GTTGATACCAACCCAGACCACCCGGAACAT 1250911 36 97.2 30 .........................G.......... CGTTGTTTTTTAATAAGTGAGGTGTGTAAA 1250977 36 97.2 31 .........................G.......... ACAGGTGCTAATGCAACCGCTGTATTATAAA 1251044 36 97.2 30 .........................G.......... GTGTCGAAGTTAAACAAACTAGAAGTTTAA 1251110 36 97.2 30 .........................G.......... ACGTTTCATAAAAGATAAATCTGAAACTTT 1251176 36 91.7 29 ...C.......G.......A................ ATAAGTATGTGACTAAGAAAAGAGGAATA 1251241 36 97.2 29 A................................... TTAGAAGAAACATGTATCACGTTAGTTAA 1251306 36 97.2 29 ........G........................... ATTGAAGATTACAAAAAGAAATTAGGTGA 1251371 36 100.0 30 .................................... CGTTGAATTTGAAAAACCTGGTGAGTACAT 1251437 36 100.0 29 .................................... ATAAACATGTAACACAAAAAAAGGGTACG 1251502 36 100.0 29 .................................... TGATTTTTGGTTAGGTCAACTTATGACAA 1251567 36 100.0 30 .................................... TTTTTGTTTTTCCTTCTAATGCACCGCCTT 1251633 36 94.4 29 ..............G..........G.......... ATATGCAAATTGCATCTTAAAATGGGCGC 1251698 36 97.2 29 ............C....................... TACCTTACGAATTAAAAGAGTTAGATCGT 1251763 36 94.4 30 ..........C.C....................... ATTTTTATTCGATACTTATTCTCGAATTAC 1251829 36 94.4 30 ........G................G.......... ATGAGCCAGTTTTGTTTGATGCGCCACTTA 1251895 36 97.2 29 ............C....................... AGTACGTGTCGATTCATTTTAGAACGTTT 1251960 36 97.2 29 ............C....................... GATATTACACGTACAGCTTATGACGAAAA 1252025 36 100.0 29 .................................... TTAACTACTTCTTGCTCAACTGGTCTTCC 1252090 36 97.2 30 ...........................C........ TGACGACCCTATCACTGACAAATTAGTTGG 1252156 36 94.4 29 ........G................G.......... GATAAAATTGGGCTAATGTGGAAAGTGTT 1252221 36 97.2 30 ........G........................... AACTCTGCAAATTATGAAATTGTCGAGTAT 1252287 36 94.4 29 ............C......A................ ATAAGCATGTGACTAAGAAAAGAGGAATA 1252352 36 97.2 29 A................................... GAATTTAGAAAAACTCAAGAAGCTACGCA 1252417 36 88.9 0 ..............T..........T......T.C. | ========== ====== ====== ====== ==================================== =============================== ================== 35 36 96.6 30 GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Left flank : TTCTCTTGTCATAAAAATCGCCTACTTTCTTAATTTAACAATATCTATTCTCATAGAATTTGTCCAACTAAGTGTAGACGATTCACATTTTTGGGGCTCAAAGATATTCAAAGATTTCTACAATTGATTAAAAGTTATCAACTCACAACCATTATAATTACAAATCATCCATCTATTATCATTGAGGAAGAAAATGTTTATTTATGCAAAAGCAATAAAGAGTGTCACTCAATCAAAGATATAAGGGAAGATCTAGAAATTCTTATGCCACAAGAAACAATTAATGACAAAACGGTTAGAATGATTGCTTATCATGAATTCATAGGTACAGATTTAAAAGAACTAGCACGATACTTTGAGTTTATTAATGATTACAATTAAGATATAATTGAATTTACTATGATAAATTAAAAACAACAAGCTTTATTCAATGTTTAACTTCTTAACTAAAAAGCTAAAACCTCAAAAATGGTAAAAACTATAGTGTGTATTTTTGAATT # Right flank : CATTTTTTTCTGAATTTTTAGATATAATGATAATACTGGAATGACCAATTGATAATCAATAATCGAGAAATCTTAATGATACATGTCTTTTCTTTTCATTGATATAATGAAATGATATAGTCAAATATTTTTTAGAGAAGATTGTTTTATTTTATTAAGAAAGGGGAAGTTCGATGAAGTCTATTATTGCAAAACACGCTTTTAAATTGTCAGATGGGAATTTATTTGAAAAAGTGACACGTGAAAAACCAATAGTGAATGCTCATGAAGTAGGAATAGCTGTTCATGCATCAGGTGTGAATCCGATTGATACAAAGACGCGTCAAACACCACTTCAGACTGAAGCACGTGTATTAGGATATGAAGGGGCAGGTGTTGTTGAAGCAGTAGGTGAAGATGTGACACGTTTTAAAGTAGGGGATTGTGTGATGTTTGTCGGTGCACCTAAATGGGAAGGGTCGAATCAAACTTATCAAGTATTAGATGAAGCGTATATGACG # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [11-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 1292084-1294346 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065980.1 Staphylococcus felis strain FDAARGOS_1014 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1292084 36 88.9 29 ..........CGC......A................ ATAAGCATGTGACTAAGAAAAGAGGAATA 1292149 36 94.4 28 A........................G.......... AATGTGGAATGCACTACAACATTAGCGG 1292213 36 94.4 30 ........G.............A............. ATGCCGGACTAATTGCTGAAGATGTTGAAT 1292279 36 97.2 30 .........................G.......... ATACGCGCTTATTAAAAGTATAGGGTTATT 1292345 36 94.4 30 ........G................G.......... ATTTGTACGTTCGAATACAACGGCTACGTC 1292411 36 100.0 30 .................................... TACAGCTGAATTTATGCCTGCAGAAGTTGA 1292477 36 100.0 29 .................................... TTATGCCCTTGTTTAAATGGTCGTCACAG 1292542 36 100.0 30 .................................... TTCGCTAAAAGCTGTTATAACTGATATGAT 1292608 36 100.0 29 .................................... AAGAAATGACGTTACCAGAGTTGATTGAG 1292673 36 97.2 30 .........................G.......... TATTTTGTATTAATTCTTTACTACTGTTGT 1292739 36 97.2 30 .........................G.......... GTTGATACCAACCCAGACCACCCGGAACAT 1292805 36 97.2 30 .........................G.......... CGTTGTTTTTTAATAAGTGAGGTGTGTAAA 1292871 36 97.2 31 .........................G.......... ACAGGTGCTAATGCAACCGCTGTATTATAAA 1292938 36 97.2 30 .........................G.......... GTGTCGAAGTTAAACAAACTAGAAGTTTAA 1293004 36 97.2 30 .........................G.......... ACGTTTCATAAAAGATAAATCTGAAACTTT 1293070 36 91.7 29 ...C.......G.......A................ ATAAGTATGTGACTAAGAAAAGAGGAATA 1293135 36 97.2 29 A................................... TTAGAAGAAACATGTATCACGTTAGTTAA 1293200 36 97.2 29 ........G........................... ATTGAAGATTACAAAAAGAAATTAGGTGA 1293265 36 100.0 30 .................................... CGTTGAATTTGAAAAACCTGGTGAGTACAT 1293331 36 100.0 29 .................................... ATAAACATGTAACACAAAAAAAGGGTACG 1293396 36 100.0 29 .................................... TGATTTTTGGTTAGGTCAACTTATGACAA 1293461 36 100.0 30 .................................... TTTTTGTTTTTCCTTCTAATGCACCGCCTT 1293527 36 94.4 29 ..............G..........G.......... ATATGCAAATTGCATCTTAAAATGGGCGC 1293592 36 97.2 29 ............C....................... TACCTTACGAATTAAAAGAGTTAGATCGT 1293657 36 94.4 30 ..........C.C....................... ATTTTTATTCGATACTTATTCTCGAATTAC 1293723 36 94.4 30 ........G................G.......... ATGAGCCAGTTTTGTTTGATGCGCCACTTA 1293789 36 97.2 29 ............C....................... AGTACGTGTCGATTCATTTTAGAACGTTT 1293854 36 97.2 29 ............C....................... GATATTACACGTACAGCTTATGACGAAAA 1293919 36 100.0 29 .................................... TTAACTACTTCTTGCTCAACTGGTCTTCC 1293984 36 97.2 30 ...........................C........ TGACGACCCTATCACTGACAAATTAGTTGG 1294050 36 94.4 29 ........G................G.......... GATAAAATTGGGCTAATGTGGAAAGTGTT 1294115 36 97.2 30 ........G........................... AACTCTGCAAATTATGAAATTGTCGAGTAT 1294181 36 94.4 29 ............C......A................ ATAAGCATGTGACTAAGAAAAGAGGAATA 1294246 36 97.2 29 A................................... GAATTTAGAAAAACTCAAGAAGCTACGCA 1294311 36 88.9 0 ..............T..........T......T.C. | ========== ====== ====== ====== ==================================== =============================== ================== 35 36 96.6 30 GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Left flank : AGTGAAATTAACAAAAGGAAATTATTTATCGATTTACTTAAAGACGATGATAAAGAAAATGTATTACTTATATTGTACCCAGAAGCATTTTTGGGGCTCAAAGATATTCAAAGATTTCTACAATTGATTAAAAGTTATCAACTCACAACCATTATAATTACAAATCATCCATCTATTATCATTGAGGAAGAAAATGTTTATTTATGCAAAAGCAATAAAGAGTGTCACTCAATCAAAGATATAAGGGAAGATCTAGAAATTCTTATGCCACAAGAAACAATTAATGACAAAACGGTTAGAATGATTGCTTATCATGAATTCATAGGTACAGATTTAAAAGAACTAGCACGATACTTTGAGTTTATTAATGATTACAATTAAGATATAATTGAATTTACTATGATAAATTAAAAACAACAAGCTTTATTCAATGTTTAACTTCTTAACTAAAAAGCTAAAACCTCAAAAATGGTAAAAACTATAGTGTGTATTTTTGAATT # Right flank : CATTTTTTTCTGAATTTTTAGATATAATGATAATACTGGAATGACCAATTGATAATCAATAATCGAGAAATCTTAATGATACATGTCTTTTCTTTTCATTGATATAATGAAATGATATAGTCAAATATTTTTTAGAGAAGATTGTTTTATTTTATTAAGAAAGGGGAAGTTCGATGAAGTCTATTATTGCAAAACACGCTTTTAAATTGTCAGATGGGAATTTATTTGAAAAAGTGACACGTGAAAAACCAATAGTGAATGCTCATGAAGTAGGAATAGCTGTTCATGCATCAGGTGTGAATCCGATTGATACAAAGACGCGTCAAACACCACTTCAGACTGAAGCACGTGTATTAGGATATGAAGGGGCAGGTGTTGTTGAAGCAGTAGGTGAAGATGTGACACGTTTTAAAGTAGGGGATTGTGTGATGTTTGTCGGTGCACCTAAATGGGAAGGGTCGAATCAAACTTATCAAGTATTAGATGAAGCGTATATGACG # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [11-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //