Array 1 38239-39401 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLBK01000019.1 Streptococcus dysgalactiae subsp. equisimilis strain KNZ04 sequence019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 38239 32 100.0 33 ................................ AGCGATTTTGACCGCTTTCTCGCCACCTTTTTT 38304 32 100.0 35 ................................ ACTATTTAAGACGACTTCCGAACCAGCGGAAAATG 38371 32 100.0 34 ................................ AATTGTTCCGCCGAGAGATTGAAAAAGCGATGCC 38437 32 100.0 34 ................................ TATTAGACCACTCACAATATCTCTTGCGTTTTCA 38503 32 100.0 37 ................................ GTCTTAGTTGTGCGTCATATCCTTCCAAATGAGACAC 38572 32 100.0 34 ................................ CAATCACGGTTCATGTTCCTGAAAGAATAGTGTG 38638 32 100.0 34 ................................ GTATCTGTCCTATGTGCTAAAGCTATTTGCGCTT 38704 32 100.0 36 ................................ TAATATTCTTTTTACTTTTACATGTGTCCACGTATT 38772 32 100.0 34 ................................ AAGTCATCACGTAAATTTTGCAATAATTCATCTG 38838 32 100.0 33 ................................ AAAAATACGACAAGTAGCTATACATCCGTTAGC 38903 32 100.0 35 ................................ ATGGTATTATAAAAAGCCTGTGTATGTAAAACTTG 38970 32 100.0 34 ................................ GTTTAGCTTATGAGACTATTATAGACTAGTACGC 39036 32 100.0 34 ................................ TGAAAGTAAAGCTTACATATTTTTCGTTATTCAT 39102 32 100.0 34 ................................ CTTTTATCTGTAAAATCGACGAAGAGCACGAAGT 39168 32 100.0 36 ................................ TTTATAAACCTGCCTTTCTGTTAATTCTTTATCTCT 39236 32 100.0 36 ................................ ATTGTAATCCACTGCCTGCTCTCAACTGATTACTTG 39304 32 100.0 34 ................................ GTTCTGATTTTGGCATGTCCGTCAAGGATGTCAT 39370 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ ===================================== ================== 18 32 99.5 35 GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACTGAAACATCGGCGGGCAGAAAAAGATTGCGTCATGTTGCTAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCGGAATTTGTGGATATAAAGCACCGATTAACACAAATTATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGCCCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAACCTAGGTTTCACAGAAAACCCTAGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTCTTCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCT # Right flank : CCTTGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTATTTTCTCCCCTCTCTTTCCCCCTCACATATGCTATAATAAGCTTAACAAATGCATGGTAAAGGAGTTAGAATGGCTAAGGTTCGGTATGGGATTGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGATGCGTTTGGCTGGCAATGGCGAGGTTGTGGCGGTATCCAGTCGGTCACTTGATAAGGCAAACGCTTTTGCGGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATGCGTCGATTGATGCCATTTATGTAGCAAGTATCAATCAGGACCATTTTCCTGCGGCTAAGAAGGCTTTGCTGGCAGGCAAGCATGTTCTGGTGGAAAAACCGTTTACCTTGACAGCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCACGGCTTGTTTTTGATGGAGGCTCAGAAGGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 16189-15559 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLBK01000088.1 Streptococcus dysgalactiae subsp. equisimilis strain KNZ04 sequence088, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 16188 36 100.0 30 .................................... TGCGGCAATTACGCAAGAAATATGCGATTT 16122 36 100.0 30 .................................... GTAACTTTATGGCTATCTACCAAGGGGAAA 16056 36 100.0 30 .................................... AGCGTTATTACCATTCATGCCAAACATGGT 15990 36 100.0 30 .................................... AGGGAAGTGGCTATGGAAAACAGCAAAGGG 15924 36 100.0 30 .................................... CATACTCAGAGAGCGAGTATAAAAAGTCTA 15858 36 100.0 30 .................................... ATAATTGTCGTAAACTTACCAAAAGGTGGA 15792 36 100.0 30 .................................... AGATAAAGTAACAAAAGTAGTCTACGAAGT 15726 36 100.0 30 .................................... AGTAAAACAGCTTGTTGAATCAGGGAACAT 15660 36 100.0 30 .................................... AGTAAAACAGCTTGTTGAATCAGGGAACAT 15594 36 94.4 0 .................................TT. | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 99.4 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : TAG # Right flank : AATATCGTCAATATGACTTGAGAGAGGGATAAATACAATATCCTTATGCCTTCCCATTCTTTCTATTAAAACGTTTTCATGTTATAATAGTCAAAAGGCGAAGGAGGGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCGGATGGGGTTGAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGGTTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGGTAACTAAACCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGGGGGTAACTAATCCTAAGGATGCTCTTCCCGGGACCATTCGTGGTGATTTTGCCCAAGCTCCTGGTGATGATGGAGGTATTTTTAACGTGGTGCATGGGTCTGATTCAAGAGACTCTGCTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //