Array 1 174592-173194 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLEN010000009.1 Salinicola sp. DM10 scaffold9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================================== ================== 174591 28 100.0 32 ............................ GATCAGCTCCGCGCGGCTGGCTGGAGTGACGC 174531 28 100.0 32 ............................ TCATTGACCGGGATCAGGGAGCTAGCCATTAA 174471 28 100.0 32 ............................ TTGTCGTACGCTGGATAAACCTTTTTGTCAGC 174411 28 100.0 33 ............................ TGACGGTCGAGCGCCGCCGCGCCCAGAAGGTGN 174350 28 100.0 32 ............................ AAGAGCTGAAGCGCCTCCGAAAGCGGCATGGG 174290 28 100.0 32 ............................ ATAGCCGATGCCTGCTCAAGAGACATTCCCAT 174230 28 100.0 32 ............................ GCCTGGGCCGCCGTGAGCGGCACGATCACCAA 174170 28 100.0 32 ............................ ACCTCGCAGCCGTGGCTCACGGGGTCCCGCAG 174110 28 100.0 32 ............................ TTGTTCGCCGCCTGTGCTCGCTCCCCGCGTGC 174050 28 96.4 33 ...........................N AGTCAGCCAGTGGCCTGATGCGCTGCCCGCGAA 173989 28 100.0 32 ............................ ATGTAGCGGGCGGTATGCGCCCCATACAGGCA 173929 28 100.0 32 ............................ TCTTGCGTGTTGGGGTCGTAGAGTTCCTTGGT 173869 28 100.0 49 ............................ TCACACCCCTAGCNAAAAAGCTGATCGCCGCCGATGGATCGCTCGCGTT 173792 28 100.0 63 ............................ TGCTCGATCAGCGACGCGGTGTGGGCGCTGAGNNNNNNNNNNNNNNNNTGGATCGCTCGCGTT 173701 28 100.0 32 ............................ AGGTAGAAGAGAAGATCACCATCGAGACCCTT 173641 28 100.0 32 ............................ TCTCGCCGCCGGCCAGCACCCATCGATCGAAT 173581 28 96.4 32 ...C........................ TATGTGGGTCGGCCGGGTGGCGCGGTGCTGTT 173521 28 96.4 32 ...C........................ ACATGCCCCGCTGGGCCAGCCGCATCACGCTG 173461 28 100.0 32 ............................ AGCACGAACCGATACTCCTCATCGAGATATGA 173401 28 100.0 32 ............................ TTGCGCATGCGCAGCCGGGTCAGGAACTCGGC 173341 28 96.4 32 .C.......................... TCAGCCATGGCTTGACGGAAGGTCATGCCGAC 173281 28 100.0 32 ............................ GTTCCAGCGGATCGGCAGCTCCGCGCCGGGCG 173221 28 92.9 0 .........A.................G | ========== ====== ====== ====== ============================ =============================================================== ================== 23 28 99.1 34 GTTGGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : TGGTCGTTGGCTGCCGCCCAGGCAGCTCAGAAACTTGAGAAGTCGGCCGCTTCCCGGCTCTTCTAGTTGGCTGCCGCCCAGGCAGCTCAGNNNAAAACTGATCATTGTCGGCTGCGATCAAGATCACGGTTGGCTGCCGCCCAGGCAGCTCAGAAATGGTCGTCGCCGGGGAGCGTTGCCAGGTGGTCGTGCGCTGCCGCCCAGGCAGCTCAGAAAAACGCGGTCGACCAGCTGGGAAAGCTGCCCGGGTGCGCTGCCGCCCAGGCAGCTCAGAAAGCTGCGCGGCTCTCGATCAGGCGCTTCAGGTCGTTGGCTGCCGCCCAGGCAGCTCAGAAATACGGGGCCGCTATCCGGTGCTTTGCCTGGANNNNNNNNGGTTGGCTGCCGCCCAGGCAGCTCAGAAACGAAAGCGGCGGGCTTTGGTCAGGGTGCTGCAGTTGGCTGCCGCCCAGGCAGCTCAGNNNNAAAACCGAATGCGGTCGCGGCGTCAGGACCATCAT # Right flank : CACCATGGCATCAGACAATTGATAGCGGATGAAAGGCCTATATAGCGCGGCCTTACTCGCGTGTGTCTGCGCCAGGCAGGGGGCCAGCCACGGAGCATCCGCGCCTCCGTCGACACGACCCTCACAACGAGGTTGCCCGAAGACAGATCCTTGGCGAGTGCAACCCTTGCCATCAGGCGGCCGTCGTTGAATGCCTGCCGGCGCGTAAACGATACAGTCATGCGAATTCAGATTTGGCTGTTCGCGCAACAGCAAACCGCGGATCGTGATGTCGCCCTTGGCGCGATAGCCTTCGTCGACATCACGCCAAAAACTGCAGAGTTCACACGATCAGGTCTTCATCCTTCCAGAGGCGGAACCCGCCATCGAAGGCGAGTGCGTTTTCGCCGCGCCGGCATTTCGGCGGGAGCGTGTCGAGCTTTTTGACGTTCCCGCCACCAATAACGATGTAATCGGGCTCAAGCGCTGCGGAGAGGCACTCAACGACATCGAACACGCGC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 175574-174688 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLEN010000009.1 Salinicola sp. DM10 scaffold9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================== ================== 175573 28 92.9 38 ..........................NN NNNNAAAGATAGGTGAAGCTCTCGATGTTGATGTCGAG 175507 28 100.0 32 ............................ TCGGTCGTCGTCGATAGCGCAGTGATACGGCT 175447 28 100.0 33 ............................ AGATCGCACCGGCGATTGGCGCTGCGCTGAGCN 175386 28 100.0 32 ............................ TTCTCGCGAATCTCTCGCGAATCGCGGTCGTA 175326 28 100.0 32 ............................ ATCTCGACCAGCTCTTTCCCCTCGTTGCTGCG 175266 28 100.0 32 ............................ TTCGGCAATGGCGAGGCGTTCGGCGACGGCGT 175206 28 100.0 32 ............................ TGCTCGCCGAGCTGGGTGCCACCCACCTGCTG 175146 28 100.0 32 ............................ AGCTCGAATAGCTGGGCTTCTTGGTCTTGGTC 175086 28 100.0 32 ............................ CTTGAGAAGTCGGCCGCTTCCCGGCTCTTCTA 175026 28 89.3 35 .........................NNN AAAACTGATCATTGTCGGCTGCGATCAAGATCACG 174963 28 100.0 32 ............................ TGGTCGTCGCCGGGGAGCGTTGCCAGGTGGTC 174903 28 92.9 32 ..GC........................ AACGCGGTCGACCAGCTGGGAAAGCTGCCCGG 174843 28 92.9 32 ..GC........................ GCTGCGCGGCTCTCGATCAGGCGCTTCAGGTC 174783 28 100.0 40 ............................ TACGGGGCCGCTATCCGGTGCTTTGCCTGGANNNNNNNNG 174715 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================== ================== 15 28 97.9 33 GTTGGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : AGAGCCTGACGCAACTCATGGTGCAACCCTGGCTCAATGGCATGCGCGAACTCGTCGAGACCGGCGACATTCTGCCAGTACCCGACGGAGTGCTGCATCGCGTGGTCAGGCGCCGGCAGTTCAAGACCGGCAACGACAGCCAGGTGAAGCGCTACGCACGGCGGCATGCTATCGACCTCGAAGAGGCGCGAGCGAGGTTCGCACGCAGCAGCGAACCGCGCATTACCTTGCCCTTCGTTTCACTCAACAGCCGGTCCAGCCAGCAACGCTTCGCCCTGTTCATCGAGCATGGCGAACCGCAGCCGACACCGGCCGATGGCCCCTTCAATCACTACGGCCTGAGCCAGGGGGCGACCATTCCCTGGTTCTGACCCTTTTTTCGCGCGCTTTTATAGCGCTCGGAAAAACAAGGGGTTAACGACGCCTCCGCAAAAAGGGAGGCGTCGCGCTTTATGGCTATTGCTCTTTAACAATCAGGGTATTAGCTTGAAAAAGCTCTA # Right flank : CGAAAGCGGCGGGCTTTGGTCAGGGTGCTGCAGTTGGCTGCCGCCCAGGCAGCTCAGNNNNAAAACCGAATGCGGTCGCGGCGTCAGGACCATCATGTTGGCTGCCGCCCAGGCAGCTCAGAAAGATCAGCTCCGCGCGGCTGGCTGGAGTGACGCGTTGGCTGCCGCCCAGGCAGCTCAGAAATCATTGACCGGGATCAGGGAGCTAGCCATTAAGTTGGCTGCCGCCCAGGCAGCTCAGAAATTGTCGTACGCTGGATAAACCTTTTTGTCAGCGTTGGCTGCCGCCCAGGCAGCTCAGAAATGACGGTCGAGCGCCGCCGCGCCCAGAAGGTGNGTTGGCTGCCGCCCAGGCAGCTCAGAAAAAGAGCTGAAGCGCCTCCGAAAGCGGCATGGGGTTGGCTGCCGCCCAGGCAGCTCAGAAAATAGCCGATGCCTGCTCAAGAGACATTCCCATGTTGGCTGCCGCCCAGGCAGCTCAGAAAGCCTGGGCCGCCGTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //