Array 1 18-338 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIQH01001223.1 Bathymodiolus thermophilus thioautotrophic gill symbiont strain BAT/CrabSpa'14 BATSymA_Scaffold946, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 18 35 100.0 36 ................................... GGCGCAGCAATAGATTGGATAGGAGACATATTTTGA 89 35 100.0 36 ................................... ATCTGATGACCAGCTGGAATATGCGGCTGATGATGT 160 35 100.0 40 ................................... TGCCGTCAAGACTGAAATTAATTTCAAGGGGGTAACATTC 235 35 100.0 34 ................................... AAATGACAAAATCGTTAAAGGCATACAATGAATT 304 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 5 35 100.0 37 GTTTCAACTGCCGTATTCGAATAGGCGGGTCTCAC # Left flank : TTGGCTCTGGAGGTGGAG # Right flank : GGTAAGATGGGGG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTGCCGTATTCGAATAGGCGGGTCTCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [11.7-8.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 4886-8278 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIQH01001249.1 Bathymodiolus thermophilus thioautotrophic gill symbiont strain BAT/CrabSpa'14 BATSymA_Scaffold97, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 4886 36 100.0 30 .................................... TTTGGCGGGGTTGCCCTGCTATTCGTGGTT 4952 36 100.0 30 .................................... CTCGTTCAGGTTCTCGTGGTGGTATCCGTC 5018 36 100.0 30 .................................... ACAAACAACTTGACACTTTATTTACTAAAA 5084 36 100.0 30 .................................... TTTTTATTTGTTCTTGCAGGTGATTCGTTA 5150 36 100.0 30 .................................... AGTCGAAGGGTCGGGTTTTTCAAACATCGC 5216 36 100.0 30 .................................... TAAAGTTGATCAACTTTCTAAAGTCTCTCA 5282 36 100.0 30 .................................... CCAAATATTCGATTTAAGCAATAATTATTT 5348 36 100.0 30 .................................... AAGGGTTTTTAACTGGTGCTGGTACTTCGG 5414 36 100.0 30 .................................... TAGACACACAAATATATCACAAATGCGAAG 5480 36 100.0 31 .................................... TTCCTTCTCGGAGCAATGTATTACGCCTCAT 5547 36 100.0 30 .................................... TTAATTATTCTTTGATATGTCAATGTTTCG 5613 36 100.0 29 .................................... TGCAAGGCATTAAGTATCCCTTTTTTTAT 5678 36 100.0 30 .................................... ATTGAGTTTTTAATCAAGACAGAAAACAAA 5744 36 100.0 30 .................................... TAGGCGTTCTGGTGGTGCTCCTGGTAATCT 5810 36 100.0 30 .................................... TGGGTGTTGGGTGTGGGTGTTAATGTGCCA 5876 36 100.0 30 .................................... GTGGCGCCAGCGGTTGCGATAGCGGGTAAA 5942 36 100.0 30 .................................... AAGTCTAAGTACGCTATAGATAACGAAGGT 6008 36 100.0 30 .................................... CTGACCATTGCTTACATTCCAGTTCTTTAA 6074 36 100.0 30 .................................... CTATCTTTATCAACCCTCTTAGCATTATCA 6140 36 100.0 30 .................................... TTGTTTGTTGTTCTTGGTTTGATTGCGTCC 6206 36 100.0 30 .................................... TTAATGATTCCGCTTCTGCCGTTTCTGCCG 6272 36 100.0 29 .................................... TAAAGTTTTTAATTTTGGTTTATTTTTTT 6337 36 100.0 30 .................................... TTCAATACATTTATGACGACTGCGAGACAT 6403 36 100.0 30 .................................... GTAAGAAATATAATATACTGCCAAAGTTGT 6469 36 100.0 30 .................................... CGATGATGGCTGTTCACCATTGTGACTTAC 6535 36 100.0 30 .................................... CATCGATAACTATTGATAAGGCGCGTGATA 6601 36 100.0 30 .................................... TCTAGACATCATTCTAAAAGGGATTTCGCT 6667 36 100.0 30 .................................... TAAAGAGGCGTTGAATGATAAGATTGAATT 6733 36 100.0 30 .................................... TTTGTCATTGTTTTACCCTCATTATTTGGT 6799 36 100.0 30 .................................... ATACGCCTCATCGCCAAGGTCTTCTCTGTC 6865 36 100.0 30 .................................... TGTCTAATGTATATGGTTCTGTTCTTGGTA 6931 36 100.0 29 .................................... TATATTGGTGGTGCCAATGATATTTCTGG 6996 36 100.0 29 .................................... CCGCCGGCAGGTGAACTAAATTGTTCTGA 7061 36 100.0 30 .................................... TATGCACGCATAATTGAGTACATTATTCTT 7127 36 100.0 30 .................................... ACGCTAGAATCAGACCCCTTGTCAAGGCAT 7193 36 100.0 30 .................................... GCATCAAAGAGAAGAGCGGCAAAAAATAGA 7259 36 100.0 30 .................................... AAACAAGCCAGCACTAGAAATGCCACCATA 7325 36 100.0 30 .................................... ATTATTAATCTTTGATATGTCAATGTTTCG 7391 36 100.0 30 .................................... CAAAACCAAATTTTGCAAAATATTAAAAAT 7457 36 100.0 28 .................................... CGCATTATACACACATAATAAGAATTGT 7521 36 100.0 30 .................................... CATAGCAGTCACCGCCTTTATTTCACTTGG 7587 36 100.0 30 .................................... TATGATAGTGCTAGCAAGACTCAGCCAACT 7653 36 100.0 30 .................................... GGCGTTTATATTCTATAAAAATTCGTTATT 7719 36 100.0 30 .................................... CGCAAGTCTCATCAACATTCTTTTAAAGAA 7785 36 100.0 29 .................................... ACATGACAATGCAACAACTAAAAGCACAA 7850 36 100.0 29 .................................... TGGGGAAATCTTCGCTCGTATAAGTATTC 7915 36 100.0 30 .................................... GATGACACAGAAGCCATTGATGTTGACACA 7981 36 100.0 29 .................................... CGGAAGTAACAATGGTGAACAGCCATCAT 8046 36 100.0 30 .................................... GCCGCCTCGTCAATATAAATCATAATCTTT 8112 36 100.0 30 .................................... TCCTCCTTAGGTTTAAGCCAGTTTGACCAC 8178 35 97.2 30 ........-........................... TACTCTATTTTTATCAGACATATAATACCC 8243 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 52 36 99.9 30 ATTGTAACCGACTATCGCCTAAATGCAAATCACAAC # Left flank : TCAGCAAAAGCGTTGAATTTAAAAATAAAAAAATGCCACTAATGGTGTCGTTGCATTATTTAATGGCAGATTTAAAGCGAAATTTTGTCAAGGAAAGTAAAAAAATAGTTTACCCATCTTTGTAATGTTTGGCGGACTTTATGCCATGTGGATAATCGTAATGTTTGATTTGCCTACTGAGGATGAAAGAGCTAAACGAGATTATCGTTTCTTTCGTAAAATGTTGCTTGAAGATGGTTTTAGCATGATGCAATACTCGGTGTATATGCGTCATTCTAGTAGCGAAGAAAATGCACAAGTTCATGTCAATCGAGTAAAAATGCATTTACCAGCAGACGGCGAGGTACGCATTATCAAAATAACAGATAAACAGTTTGGACGAATTGAGGTTTTTTACGGAAAAAAACGTCGACCCATCGAAAAAGCACCAGATCAATTATCATTTTTTTGACTAGAAAAAAATGATAAAAGACTGATATTAAGGCATTTTAGGTAAGGCG # Right flank : CGTAACAAAGTTATTATAATTATGTAATGTAATTGCAACCGACTATCACCTAAAGGTTAAAGATTGGTCGGTTAGTTTTTCGCTACCATTTAAAAATTTATCAGAACAGTAAGGATTAATGGGTGGTTGTTAAACCACTCTTTAACAATCACAAACAAGATATAAAAAATAGATATCTATCTGTAGAAATGCAAATAATTTACCAAAAGGAATGTCAATAAAATGAACTTAACTGTTATTATCCCCAACCAAAGAAAGGCACTATTTCTTGCTAAAAAGCAACTGAGTGAGTTGGTTTATGATGCTGTGAATTTAGAGGGTATAAAATATACTTTGCCAGAAGTGCAAACTTTATTAGATGGGGTAACAGTGGGCGGGCATAGGCAAATAGATGCGTTAATAACACAGAATCAGATTGAAGCATGGAGGTTTTTGTTTAAGGTAATTGAAGATAAGAGTTTTGATTTATCTGCTGAATTTGTGTGCCAATTGCAAGAAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTAACCGACTATCGCCTAAATGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 5253-4473 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIQH01001171.1 Bathymodiolus thermophilus thioautotrophic gill symbiont strain BAT/CrabSpa'14 BATSymA_Scaffold9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 5252 36 83.3 39 ..TT...T..T..................G.....G GCTTTAGCGTAGTAGAACATCTCTCCCATATTTGTAACT 5177 36 94.4 39 ..........T..................G...... GAGTCGGTGTAGGAAAACATATACCCCATATCTGTAACT 5102 36 91.7 39 ...T......T..................G...... ACGATAGTGCTGGCGAACATGTAGCCCATATCTGTAACT 5027 36 86.1 39 ..A.......T...A..G...........G...... GCAGAAGCATCGAAAAACATCCAGCGCATATTCGTAACA 4952 36 83.3 39 ....CC.........C.G.T.........G...... GCTTCGGTATAGTCGAACATTCCAATCATATTTATAACA 4877 36 88.9 39 ..A..C....T..............T.......... GCAATAGCACCAGAGAACATATCCTCCATATTTACAACC 4802 36 88.9 36 .C..C..............T.....T.......... GGAGTTGAGGAGAACATTGAGCTTGTATCTGTAACT 4730 36 88.9 36 C...C..............T.....T.......... AGAGTGTCAATGAACATATGGCTCATATTTACAACC 4658 36 100.0 39 .................................... GAAGTGGCATAACAAAACATTTCTTTCATATTTACAACC 4583 36 100.0 39 .................................... ACATTGGCGCCATAGAACATTCGATTCATATTCGTAACA 4508 36 88.9 0 ....CC.................G...........G | ========== ====== ====== ====== ==================================== ======================================= ================== 11 36 90.4 38 TTGCTAACATCCCAGTTACCAATATCTTGATTGAAA # Left flank : AATAACTCAGGTTAATTTTATCGCCTTCGCTAGCGTTAAAATCTTTAATGGTGTCATGACCCGCATTTTGATAACTATAAACAAAAGTATCCGCACCAGCGTTACCCGTAAGAGTGTCATCGCCTGCACCGCCGTAGAGTGTGTCGGCATGGTTGCTCCCTGTTAGCGTGTCATTGTCACCTAAACCGTGAAGGGTGGCAGCCTCCCCATGTCTGCTCTTATCTATTGTATTCTTGGCGTTGTTGCCAACAAATACATCTTTAATACCATTGTTATTACTGTCATTAAGTAATCCATTATCAGCAATAGTCCAGTTCTTGTCCAGTAGTGCTTGGCGTGCCGTGGCATTGGTGTATTTAGTGTCATTTGCACCAAAACTTACGCCTGTTTTTATACCCTCATTGTCGGTTACATTAATATCTGACCAGCCTGCTAGTAATAGGTCGTAGTTTTCAGTGCTAAAGGCGGTTTTATCAAGTATATTATTAGCAACCTCCAGA # Right flank : CCTTCGTTATAGCAAACGCCTCGAGTAATAGTTTCGTCATAGCAAAACATATAACTCATATTGGTTGCCAACGAAGTATCCATGTTACTAATGTCGTCGTTGAATGAAGTGTGCCCGAAGTAGAGAAAGGAAAGATTGGCACTTTGTTCAGTGACCAAAGTTGCCACTTCATCAGTCATTATTGCTTGAGCAGCACTATCTGTTGGATTGGTAAAGTCTGTTTTTGCTTCAATAGCAGCTTGATAACGGTCTTCTAGGTAGTAATTAACACCTTTTGCCACCATGGATAATTGCTCAACAGTGGTTTTGTCGTCATCAGGTGTGTTCCTGACATAGCCAGAATCCTCGTAAATTTTGTTAAGAACATCGGCACTACTTAATACAGTAACATTAAAAAAAACTGAGGCTGATATCAACTGAACTGCATCAATTTCATTGTATTCATTGACACTATTGCCAATCGTTAAGCGAATTTTATTTGATAAGTAATCAAGTGCATG # Questionable array : NO Score: 5.10 # Score Detail : 1:0, 2:0, 3:3, 4:0.52, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGCTAACATCCCAGTTACCAATATCTTGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 1 248-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIQH01000149.1 Bathymodiolus thermophilus thioautotrophic gill symbiont strain BAT/CrabSpa'14 BATSymA_Scaffold1131, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 247 35 100.0 38 ................................... ACCAACACCAACTAAAAATAAAAAGGAGAAAGAATATG 174 35 100.0 37 ................................... TTATGACTATTTCCTCACCATTTTTTAAGATGGTTTT 102 35 100.0 34 ................................... CTGCTGAGGGGTGGGTTTTGGCTCTGGAGGTGGA 33 33 94.3 0 .................................-- | ========== ====== ====== ====== =================================== ====================================== ================== 4 35 98.6 37 GTTTCAACTGCCGTATTCGAATAGGCGGGTCTCAC # Left flank : ACAGCACCAATTATACTA # Right flank : C # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTGCCGTATTCGAATAGGCGGGTCTCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 43-216 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIQH01000229.1 Bathymodiolus thermophilus thioautotrophic gill symbiont strain BAT/CrabSpa'14 BATSymA_Scaffold1203, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =================================== ================== 43 35 100.0 35 ................................... GGAAAACTGCTTTCTCAAAGTGAGGAGGTCCTTAA 113 35 100.0 34 ................................... CTAACAGCAACTACTCAACTATTTGCGGAGGTAT 182 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =================================== ================== 3 35 100.0 35 GTTTCAACTGCCGTATTCGAATAGGCGGGTCTCAC # Left flank : GTCTCACCCCACAGGGAGCACAGATCTCGCTAACTCTCGTGGG # Right flank : AAATGGTTGCAGAC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTGCCGTATTCGAATAGGCGGGTCTCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [28.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 3284-3530 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIQH01000370.1 Bathymodiolus thermophilus thioautotrophic gill symbiont strain BAT/CrabSpa'14 BATSymA_Scaffold174, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 3284 35 100.0 36 ................................... ACACAATATTTTAACATTTAGGAGAAATTTATGGCT 3355 35 100.0 36 ................................... CTATTGCGCGTGGTACGCATAATCCAGCTATTGTTG 3426 35 100.0 35 ................................... AGGCTGCATTGGAAAATGCGATTGCTTAGTTTTTA 3496 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ==================================== ================== 4 35 100.0 36 GTTTCAACTGCCGTATTCGAATAGGCGGGTCTCAC # Left flank : GAAGATCAAATCTCAAGACTATTCACAAAATGGTCGAAAAGAAATTGGCACACTTGTCTCTCCCCACAGATTTAGACACACAACAGCGACAAAAATTACCAATAGCAAATGCCATTTAAAATCACTGGTCATTCTGACATTAAAACAACTTTAGGTTATGTTGAAACGAATATTGACGATTTGAGAAAGATTCAATCAGTCATTAATAACGCAAGAAATAGATAAAAAACCACTTACCGCTTTTTCGATAAGATCACACAAGTGCTTACTTGTTGTAAAAAACTAAAAAATATATTCTTAAATTTTATTACAGATCTTACTATATTTATTAAGCAAATCATCTAGGTAAAAAAGTTTAAAGAGCCAAAATTTCTAACTTCAGTGGCAATCAAAATTAAAAAAATTCTGTTTAATTTATTAAACCTTGCTTATCTCATAAGCACTACTAAGCGCTGTATTTAGGCGGGTCTCACAAAACACTAGTATGGTGTAAACGCAAT # Right flank : GATTAAGAAAATGTATGTACAAATTGTAGAGTTGCGTTTCAACTGCCGTAT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTGCCGTATTCGAATAGGCGGGTCTCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 50-3438 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIQH01000377.1 Bathymodiolus thermophilus thioautotrophic gill symbiont strain BAT/CrabSpa'14 BATSymA_Scaffold180, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 50 28 100.0 32 ............................ GCTTCGACTGGTATCACTAATAATTGAGTTAA 110 28 100.0 32 ............................ TGATACATTTCACGACAAAACATACAGCAACT 170 28 100.0 32 ............................ CATGCATCATTCTACCAATATCCAATTCAACA 230 28 100.0 32 ............................ TGCAAGTGATTTAGCGGCTAACGATGCTAATT 290 28 100.0 32 ............................ TGATAAAACTTATTCTCATAATAAGCATTTGA 350 28 100.0 32 ............................ TCACACATCACATGCTTATCAATACCACGAAC 410 28 100.0 32 ............................ CAGCAAAATTAGCCTCAATTGATACACCAAAG 470 28 100.0 32 ............................ TTAGTTGGCGTCCATATTTTTAACATAATCAT 530 28 100.0 32 ............................ GTTATCGTTTACAGTTCCTAACGGTGCTTGAT 590 28 100.0 33 ............................ CGCCTTTTTTTGGTTTTCAAAATCAGTATTGAG 651 28 100.0 32 ............................ AACAAATAAATTAAATAAAAGGAAAATTATGA 711 28 100.0 32 ............................ TGGTGGTCCTCTTTATTTTGCTGGTGGTTCTC 771 28 100.0 32 ............................ AATCAGTAGAATCACCACCAACAAGCCAAACA 831 28 100.0 32 ............................ TCTTGATAGAGGTCTTTTAAAGTCTGATTTTC 891 28 100.0 32 ............................ TGGTACTCAGCCTGTTTGGCTTGTTGGTGGTG 951 28 100.0 32 ............................ AGCATTAAAAGTGGTCTTATGAGAATGAGACA 1011 28 100.0 32 ............................ TTTAACGATTTGACCAAAAACATCTGTAGCAC 1071 28 100.0 32 ............................ AGCATAACTTAACCGCTAATAGAGATAATCGT 1131 28 100.0 32 ............................ AAAAAAGGAATCATTACAAGGATTGAAGGAAG 1191 28 100.0 32 ............................ ATGAAGATACTCAGAACGCTGAAGGCGTGCAT 1251 28 100.0 32 ............................ AATTGTCAAAAAGAATACGATTAGGAACGAAA 1311 28 100.0 32 ............................ AATGCGGCTATTCTTTTTTTGCCTCATCTATC 1371 28 100.0 32 ............................ ATCCAATGCTCTTTTGAGCCCCGATTGCGCAT 1431 28 100.0 32 ............................ AGAAATTGGCGCACGAACATTGACGCTTGATT 1491 28 100.0 32 ............................ ATTTTGAATTTTTACATCACCGACTAATCTAA 1551 28 100.0 32 ............................ ACAAATAGTAAGAGACTAAACAACCAAATAAA 1611 28 100.0 32 ............................ GAAACAACTCGCTGGGGATGATGACGAAGATG 1671 28 100.0 32 ............................ ATAACCTGCGTTGAGTAAAAATTTATACATTA 1731 28 100.0 32 ............................ AGACAGTAAGAAGAATCGATTGAATAAAATCA 1791 28 100.0 32 ............................ ATCAAGACCAAAAGTACTATCATTACCGCCCA 1851 28 100.0 32 ............................ TCTTGTTGATACATTAAAAAATGTCAAAGTTG 1911 28 100.0 32 ............................ ATCTGAAGTAATGTTGTAAGTAGTAGTTAAAG 1971 28 100.0 32 ............................ CTGGTAACTTTAACTCAAATCCTAGCGCCAAA 2031 28 100.0 32 ............................ TAATGTAAACCCTTGTTCTTCAAGCCTGTAAT 2091 28 100.0 32 ............................ GCTACCAGTTTGACCAACGATTATAGTATGCA 2151 28 100.0 32 ............................ CATTAAAGTTTTTCCATTGCGCATACGCATTG 2211 28 100.0 32 ............................ CTTTTATGGTTGCTAAGTCCCCGTTCTCCATT 2271 28 100.0 32 ............................ AGTTAAATAATGAGTGCTGGTGGTGGTCATAA 2331 28 100.0 32 ............................ TTAAACAACAAATCATCCCCATACCCCATATA 2391 28 96.4 32 .................T.......... TAAACTAGCAAGTTTATAGCCTTGTTTTATTA 2451 28 100.0 32 ............................ ACTACCCATCAAAGTTTGGTCATAAAAATTAT 2511 28 100.0 32 ............................ CGATAGCAAGCAAGACACTAACACCAATCAAA 2571 28 100.0 32 ............................ AAATCAACAACACCCCAAGAAATTGCGACAAA 2631 28 100.0 32 ............................ TAATTTGGGCGAGCCGGGTGATATGCATGAGA 2691 28 100.0 32 ............................ AACCAGTGGAATAAACTTATCCTGTCCATTAT 2751 28 100.0 32 ............................ ATAAAGAAGCAGAGGGATTTGCATGACAAGAA 2811 28 100.0 32 ............................ CGATACTTATACTAGTCAAGCATATAACCCAA 2871 28 100.0 32 ............................ TTACCAACCCTCGGCTTTTTAACCACCAAACC 2931 28 100.0 32 ............................ AGGCAAATATCTTAATCTTGATCTGACTAATT 2991 28 100.0 32 ............................ GATTAAGGTTAGTGGGTTTGCTGTGGCGGATG 3051 28 100.0 32 ............................ GCACTACCTTTAGTTTTAATATTCACACTAAT 3111 28 100.0 32 ............................ ACGCTATGTGGTCTCGTCGAGCTCGACTCGAC 3171 28 100.0 32 ............................ AATTAATAGAACCACCACGGGGTTTAGATTTA 3231 28 100.0 32 ............................ CAATTAAAAACCCCGTATCTGCTTATGAGCAG 3291 28 96.4 32 .................T.......... ATACGCAAAAAGTTCAGGAACATCGTTACCAT 3351 28 100.0 32 ............................ ACTCTAATAAAGTGGTATCCATTTTATTATTT 3411 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 57 28 99.9 32 ATTCACCGCCACACAGGCGGCTTAGAAA # Left flank : TTTTGTTTTAAATGATTGTTACAATTGTTCTTTTTGCAATTAAAATACTA # Right flank : TGATAAAATCAATGCTCCAATCAATGGAGATAATTCACCGCCACACAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4358-5101 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIQH01000330.1 Bathymodiolus thermophilus thioautotrophic gill symbiont strain BAT/CrabSpa'14 BATSymA_Scaffold137, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 4358 35 100.0 40 ................................... CATCTGAATAGTTTGTGTTATCTAGTTCTTGCATAAGTTG 4433 35 100.0 37 ................................... TTAAGTTCTGACAATTCAGAATTAAGCTGACTAATAT 4505 35 100.0 36 ................................... AGACAAATTCTTAAGACTGGACAGGTCTGGAGATAT 4576 35 100.0 33 ................................... TGTTCTGGACAAATTCTACAATTACTTCTTTCT 4644 35 100.0 37 ................................... TCAACAAGTCTTAGAAAGCCATGGTTTAGAACCTTAT 4716 35 100.0 36 ................................... GAATATACTTAATGAGTCATTAGTGACATCGTCTAA 4787 35 100.0 34 ................................... TTCTTTTTGAATTGCGCTTTGGTCACTTTAATGT 4856 35 94.3 37 ................T....A............. AAAGCCAATGTTGCCAATAGAAAAATCAATCATTAAT 4928 35 97.1 34 .....................A............. GCCAAAGAAGTACATGTCAACAAAGCGGGTTTTT 4997 35 97.1 35 .....................A............. CCCTAAGTCTATTAGTGTGTCGTGAGTCTCATATA 5067 35 94.3 0 .....................A............A | ========== ====== ====== ====== =================================== ======================================== ================== 11 35 98.4 36 GTGAGACCCGCCTATTCGAATGCGGCAGTTGAAAC # Left flank : ACAAACGCTTGCGCCACCTCGCCGAAAGGCAGTAAATAGTTTACCCATATTTACACACTCTTTTGCAAATATGGATAATCTATTGGATACCGTGCCACAGACTCTGGCTTTAAAAATCAAAGTGCGTTACTCGCCTTATGATTGAGTTGAATTTACGAAACTTGGTCACAAGGCAAGTAACGGCCTTTACCCTCATAAATAGATAGTTTTTCAACCTATTTAATAAACGATTAAGGTATTATTGCCTTAGTAGATAACACTGTAAACCCTACTGTAATTGTTACCCAATTCGGCAAGCACGATAAAAAAATAGCAAGTTAAGTTATTTCATTAAAAATCAATCACTTAAGTTTTTCACTTGCCGATTGCCTTAACCACAACACTTTAACCAAATTAAAAAGGTATAATATGCACAGTTTCACTAGATTTTCTAAAAAATCACCGAGGTTGCCGAATTCGTCTTGTATTTCGTTGATTTATAAGGTGTTTTTTAGGGTACT # Right flank : TCCATTCTCTGTTCTCAAACTTTGCGTGGGAATGTGTATACATAAAAAAACATAATTTAAGCCGATTTTTTAAAGAACATATGTGGCTTTAGTTGCATTACAATTAAATGATGTTTTGCTA # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGACCCGCCTATTCGAATGCGGCAGTTGAAAC # Alternate repeat : GTGAGACCCGCCTATTCGAATACGGCAGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 7911-7311 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIQH01000486.1 Bathymodiolus thermophilus thioautotrophic gill symbiont strain BAT/CrabSpa'14 BATSymA_Scaffold28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 7910 35 100.0 38 ................................... AAATTCAGCCCTCAGCGTCAAATCATGGTGAATTGGCA 7837 35 100.0 35 ................................... TTTGGGATAATTTACATAACAAAGGGGCTGATGAT 7767 35 100.0 36 ................................... TTTTCATACAGTTTATATCCATTTTGAGTTTTTTGC 7696 35 100.0 36 ................................... TAAGTCTTTCACACCTGCTGTTGTGACACTTGACCA 7625 35 100.0 34 ................................... TTTGATACTAGTTACAGGTGATACATATGTGTAA 7556 35 100.0 37 ................................... TAATATACAGTTGTAGCATAATCAAAGTCATCATCTT 7484 35 100.0 35 ................................... ACTTGTTTTTTCTACTCCTGAAAAAACTCCAAAAG 7414 35 100.0 34 ................................... GCAGAAGCACCAGCAATGTAACTGCCCGTGGTGT 7345 35 97.1 0 ..................................T | ========== ====== ====== ====== =================================== ====================================== ================== 9 35 99.7 36 GTGAGACCCGCCTATTCGAATACGGCAGTTGAAAC # Left flank : TAATTTGCAAATAATAGGGCATTAAAATGACAAAAGAGAAAAAAACCATTGGCACCAACTCAATGACAAAACACTCAAAGGAATTGAGAAAAAAGACCTCAGCAGAATGGACTAAAAAACACATTATAAGCAAAGCAATCAAGTTTAATAAATCTCAAGAGAGTGATATAAAACTATTGTCTGATTTTGAATCAATTGAAGCAGGCTCAAACAAAGAAAGGTTGCAGCTGTTAGTTGATTGTTATTTGAAGCAATGATGCAAGTAAATATCGCTACAATTATTATCCAATTCGGCAAGCATGATAAAAAAATAGCAAGTTAAGTTATTTCGTTAAAAATCAATAACTTAAGTTTTTCGCTTGCCGATTGGCTTAACCACAACACTTTAACCAAATTAAAAAGGTATAATATGCACAGTTTCACTATATTTTCTAAAAATCACCGAGGTTGCCGAATTCGTCTTGTATTTCGTTGATTTATAAGGTGTTTTTTAGGGTACT # Right flank : ATCCCCCACCCATTCCCACGCAAAACATGGGGTGGCAAACACTTGGTAGTATTTATGAAGCGAGCAAGACTTAATGGGTTAAATTTTGTGCATCTTAAAGAAAGCTTATTAATTCCGATATTGCCTTTTAAAAAAACAGGTGGCTGCCTTTACCTTGTTTCAGTTATTGCCAATTAAAAAAAAACCTCTTTTAATCGAGGCTTTTATAAAAATATTATAACTTTACTTTAAGATATAAACTATTAAAAACTATTCAGCTCCCCCAAGTCTTTTTATAGCAATGTTAAAATAATTACTGTCTAATTCGTAACCCAGATAATCAAATATTTGTGATTTGATGCAAGCCATTGCGGTAGATCCACTACCCATAAAAGGGTCTAGGACAGTTCCCCCAGTTGGGCAAAATGCTTTTATAAGTTTTAGCAATAAGTCAACTGGTTTTTGTGTTGGATGAAATTTATTACCTGTATAGTTCCAACCCATGACACTGGGTAAGACTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGACCCGCCTATTCGAATACGGCAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 118-852 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIQH01000713.1 Bathymodiolus thermophilus thioautotrophic gill symbiont strain BAT/CrabSpa'14 BATSymA_Scaffold485, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 118 36 100.0 34 .................................... CAGAAGAAGAATCAACAATCATCCCCCGCAACTT 188 36 97.2 35 A................................... TTCAATCGCGGCTACGTTGTACGATTCAATTTCCA 259 36 97.2 34 A................................... CTATCTTCTCACTTGACCCTCTAGCTGACTTTAG 329 36 100.0 36 .................................... TGTTTCGGGAAAAGAACTTGAGAGAATTTGAATATT 401 36 100.0 33 .................................... ACATACCATTGCACTGAAATCTAAGGTTAGATT 470 36 97.2 35 .................T.................. ATATTCTTCTGCTCTCCGTCTCAAGGTATATGTTG 541 36 100.0 36 .................................... ATAAAAATCCGCTGATGAACCGCCAAATTCTCATGA 613 36 100.0 32 .................................... AAAGACTATGACTGCTAATAGTTGCAGTACTA 681 36 100.0 33 .................................... ATTATGTTGTATTTTATTATTTGATAGGTTTTG 750 36 100.0 31 .................................... TTAAAAGTATCTCCTAGGAGAACTTCATCAA 817 36 94.4 0 .........T........................G. | ========== ====== ====== ====== ==================================== ==================================== ================== 11 36 98.7 34 TGTGAGACCCGCCTATTCGAATACGGCAGTTGAAAC # Left flank : CTTTAACCAAATTAAAAAGGTATAATATGCACAGTTTCACTAGATTTTCTAAAAAATCACCGAGGTTGCCGAATTCGCCTTGTATTTCGTTGATTTATAAGGTGTTTTTTAGGGTACT # Right flank : TATTCCTTATCCTTAGGTTTTGTGTAGGAATGTGTCTGCACAAAAAACATAATTTAAGCCGATTTTTTAAAGAACATATGTGGCTTTAGTTGCATTGCAATTAAATGATGTTTTGCTA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTGAGACCCGCCTATTCGAATACGGCAGTTGAAAC # Alternate repeat : AGTGAGACCCGCCTATTCGAATACGGCAGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 49-8182 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIQH01000069.1 Bathymodiolus thermophilus thioautotrophic gill symbiont strain BAT/CrabSpa'14 BATSymA_Scaffold106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49 28 100.0 32 ............................ TCCTGATAGAGGTCTTTTAAAGTCTGATTTCC 109 28 100.0 32 ............................ TTACTGAGAATAGGTTGCTCACCAAGATTGGC 169 28 100.0 32 ............................ GATAAATCTGATTCCTAGCACAATCCTTCGCC 229 28 100.0 32 ............................ TGATGATAAAGATTCTACCCCTGCCGATGCCT 289 28 100.0 32 ............................ ACTTTAATCGTCCTAAGTCTTCTACTTATTCT 349 28 100.0 32 ............................ ATTCACTTTGAAATAATCTTTGGGATAAACAT 409 28 100.0 32 ............................ AAGATTAGCAGGAGCACCACCAGAACGACCAG 469 28 100.0 32 ............................ TCTTTAACAGATAGGCGAGACGGCGTATTATC 529 28 100.0 32 ............................ ATATTCACCGCACATATAATAACGAATATGCT 589 28 100.0 33 ............................ AACTATGTCTGTTCGTCGTTCTACTTTTGATAT 650 28 100.0 32 ............................ TAAATGAAATGTACGAACCATTGACATATCAA 710 28 100.0 32 ............................ TTTACCCTAGGCAATGCCCTTGGTTGTTACTC 770 28 100.0 32 ............................ AAACACTGGTAGTGGGTCTTTTGTTGGTCGTT 830 28 100.0 32 ............................ TTCTATTTTTCCAGTTTTATACGCTTCAACCC 890 28 100.0 32 ............................ GTAATACTAGCAGCTATGCCAACATCTACAAA 950 28 100.0 32 ............................ TGATAATTTTGATGAAGCCGTTTCTTTAGGTA 1010 28 100.0 32 ............................ AGTAACCGGAATTCGAAAAGCTTGAAGTGGAT 1070 28 100.0 32 ............................ TTCAGATGGCTCTCTTCATGTTGATCACTTTC 1130 28 100.0 32 ............................ TCCTTATCAATAGGGGCAGTAGACTTAGGGAG 1190 28 100.0 32 ............................ TATTCCCAAGGTATTCATCAGATGTGGTCTCG 1250 28 100.0 32 ............................ TAGTGGCAGAGTTACAAGACAGAGTTAATGCA 1310 28 100.0 32 ............................ AGTAGTCCTAAAAATCTTCTTACGAAGACGCT 1370 28 100.0 32 ............................ TTTTATGAGCATCTTGCTCCAGAGTCTATGGC 1430 28 100.0 32 ............................ ATTGACCTTAAAATAGTCTTTAGGATAAACAT 1490 28 100.0 32 ............................ GAAAAAATTAAAATAGTTGTTAAACTACTATC 1550 28 100.0 32 ............................ AGTGCAAGCATTCGTGCAATACACACACTGGA 1610 28 100.0 32 ............................ TTAAAGTATTGAGCGTTATTATCCCAGTTTGT 1670 28 100.0 32 ............................ TTTTACGCTGGTTATAGTATTAGTGTCTAAAG 1730 28 100.0 33 ............................ TACAATCAAGTGCTAAAGGTCTTGAGGCTGGTG 1791 28 100.0 32 ............................ TTCTCAATGTATCTGCCCTCGTATCAGATTGC 1851 28 100.0 32 ............................ GTAGTTACTTGTAATGTCCTCGAACTCGCTTA 1911 28 100.0 32 ............................ TCTTAAAACAACAAGGAGAAAGGACAATGATA 1971 28 100.0 32 ............................ ATAGTTACTTGTAATGTCCTCGAACTCGCTTA 2031 28 100.0 32 ............................ TCGCTATCTTGCCATTTAGACGAACTCCTTCT 2091 28 100.0 32 ............................ CATATGTAAGCGTCATCATCAATAACATCTGC 2151 28 100.0 32 ............................ TTCAAATTATTCACTGCTTGAGACTGAAAATT 2211 28 100.0 32 ............................ TTCAACAGGTATGCTAAGTGCTGTAACTCTTT 2271 28 100.0 32 ............................ ATTTGACTTGCTACAACAAGGAGAACCTTATT 2331 28 100.0 32 ............................ TCCTAAGTTGGTGAGGTCTAATTAAAAAGATA 2391 28 100.0 33 ............................ TATTAGTAAAGTCTTCTGGTCTAATATGCATTC 2452 28 100.0 32 ............................ CATGACGGGACGAGTAGTGAAATGTTGAGAAA 2512 28 100.0 32 ............................ ATTAAGTTGTAATCGAGTTTTTAAACAAACTT 2572 28 100.0 32 ............................ TTTGATATGTCGCATACTCTTAAGACTACCTT 2632 28 100.0 32 ............................ TTGTGGAGAAGCAGAAGTAGTAGCAGAAGTCT 2692 28 100.0 32 ............................ TCGTATCAATAAGCCTTACTTGCTCTTGCTCT 2752 28 100.0 32 ............................ AATACTAAAAAATCCATCAGTAAACTTGTAAT 2812 28 100.0 32 ............................ TGGCTAAAATCAAAACCAAAAATAATGGCATG 2872 28 100.0 32 ............................ TTTAGATTTAGAAAAAAGTAACCTATCTTCAG 2932 28 100.0 32 ............................ GACTGGTATCAGCAAGAAACCTTTGGCTACGG 2992 28 100.0 33 ............................ AAGCATCAAATAAAGAGAATTGGTTGTTTGTAA 3053 28 100.0 32 ............................ TCTTAAAAATCGACTCGGTTGGTGGCTTGATA 3113 28 100.0 32 ............................ GTTTTGGTATGCAAATGTTTTAAAAATATAGG 3173 28 100.0 32 ............................ CCCTTACTAAGTAATGTTTCCTCTGTTTCTTT 3233 28 100.0 32 ............................ ATTTAGCGGAACTCCTTCTATAAAGTGCCATT 3293 28 100.0 32 ............................ ATTAACCTTAAAGTAATCTTTGGGATAAACAT 3353 28 100.0 32 ............................ TCCCAAAAAATGGGCTATTGACTCAATTATTA 3413 28 100.0 32 ............................ TTCGGGTATGTGCCTGTCCATTAACATATAAG 3473 28 100.0 32 ............................ AATAGCAAACATAACTCACATAGACTCTTTTA 3533 28 100.0 32 ............................ GAGAGTAATGGCAGTTAAACTAATAGACTCAG 3593 28 100.0 32 ............................ TAGTTTTTCAATTGTCAAGTCAAAGAACTCTT 3653 28 100.0 32 ............................ TGTTTACCTGAAAATACGGCTCTCAGGATTGC 3713 28 100.0 32 ............................ TCCGTAAAAAATTATCAAAAAGTGAAAAGAGA 3773 28 100.0 32 ............................ TATAGTTGAAACGACTGTAGAAAAAGTTATAT 3833 28 100.0 32 ............................ GCTGACGGATTTTATGATTATTTAACTGGGCT 3893 28 100.0 32 ............................ TTGACAATGTAGACAACAGCGCATACAAGCAA 3953 28 100.0 32 ............................ ATACTATCTTTTTACTCCATTGTGTTATAAAG 4013 28 100.0 33 ............................ ACTTTATAGAGTGGTATCGGGTTTATTATCCTT 4074 28 100.0 32 ............................ AATTTAAAGCAAGGTGCAATATTTGGTTTTTC 4134 28 100.0 32 ............................ AACTAATTTTGGCTCATCTGAGTCTAATAATT 4194 28 100.0 32 ............................ ATACGGTTTTGAGATTTTAACGCTAAAATATT 4254 28 100.0 32 ............................ AGTTACTATATATTGGAGTCTCTCATAATCTT 4314 28 100.0 32 ............................ ATTCTATGAGTTTCTTACCGCTCTTGATAACA 4374 28 100.0 32 ............................ TTGAGCGAGAAGGATTGGCTAACTAACGCTGA 4434 28 100.0 32 ............................ ATTAAGATAATCGGTTAACACTTTATCAACCA 4494 28 100.0 32 ............................ TCCAAATCAAGAAAACCCTCCTTGGGTGACCC 4554 28 100.0 32 ............................ CCAACAGTGATATTATATTTAGGGATACCTGT 4614 28 100.0 32 ............................ AACAAGACATGAAGCGGGATGAGATTACGAAT 4674 28 100.0 32 ............................ ACTTGATACTAACTGTGTTTACTGACACCTTT 4734 28 100.0 32 ............................ TTCAGGAGAATGCTCCTTTTGGTCGTGTTGTT 4794 28 100.0 32 ............................ TAAAGAGTTTTTTGACGTCTGCAGACACTAAT 4854 28 100.0 32 ............................ TATCTCACTTAGAGAACTGAGGATTAACTTTG 4914 28 100.0 32 ............................ TAAATCCAGTTTGTGTATTGCACGAATGCTTG 4974 28 100.0 32 ............................ ACCGTGTTCTTTAGTTCACGATATTAAACTAT 5034 28 100.0 32 ............................ CACTGACGAGAGCGCTCAAGACGACAACCAAC 5094 28 100.0 32 ............................ TCCGGGCAAATTAAGCTCTTGGTGTCTTGAGT 5154 28 100.0 32 ............................ TTACGCATTTTCTTGTTATTATGACAAAGACC 5214 28 100.0 32 ............................ TCTTGACCCTGTTATGGATGGTGTTCGTTTCT 5274 28 100.0 32 ............................ GATTAGTTTGTGCCACTTGGTAATTTATGTGA 5334 28 100.0 32 ............................ ACCTAATGTGGCACTACTTCCACCAACATTTT 5394 28 100.0 32 ............................ AACCGGATTATTATTATAGTCAAAGAAAGAAC 5454 28 100.0 32 ............................ AATGAAAATAATCGTAAGATAAACACTCACAT 5514 28 100.0 32 ............................ ACTTGTAAGCGATAAGGAGTCTGCGTTTGCTG 5574 28 100.0 32 ............................ TCCTGAGGCGTTGTATTCTTTCATAATGGCGC 5634 28 100.0 32 ............................ AATCCAACACGGTTACGACCTCTAGCCTTTAA 5694 28 100.0 32 ............................ TCAAGGCCATTTGGGTGCTGTTGCTGTTTCTG 5754 28 100.0 32 ............................ GTGTAAACGAAAAATTTTTTTACGAAGCCTTT 5814 28 100.0 32 ............................ TCTTGAGGGAAATTTCCACTGCTCATTGCGCT 5874 28 100.0 33 ............................ ACTGGGGTTGAGGTAAGGACTCCGAGGATTAAT 5935 28 100.0 32 ............................ ATTCTAAGAATTTTGTCAAAAAATGCTGCTCT 5995 28 100.0 32 ............................ ACCTTGATGCTATTCGAAGGAGTCCGATTTTG 6055 28 100.0 32 ............................ AGTAACGCCACTTTCCATTTTAGTTGACAAAA 6115 28 100.0 32 ............................ TGATGAAGGCGCATAGTCGGGCAACTGGGCCG 6175 28 100.0 32 ............................ ACTTGATTTTACTATTGAAGATGAAGATAAGC 6235 28 100.0 32 ............................ CAATCGACAAACTGATCCGTGCGGTCATCATG 6295 28 100.0 32 ............................ TTTGTAGAATCGGTTAATTTCCTAGCCGCAAA 6355 28 100.0 32 ............................ GATGCAAGATAATTTGTGGGTCGTTTCTAAAC 6415 28 100.0 32 ............................ AATTTACACATTCTTGCATCAATTCTTAACTC 6475 28 100.0 32 ............................ TGATAATCATTACTTACCTCAATAATCTTATC 6535 28 100.0 32 ............................ ACTTGGGTTTAAATGTGAAGATGATTTAAATG 6595 28 100.0 32 ............................ TATAGGAGTAAAAAATGGGGTGTTAGGGCTAA 6655 28 100.0 32 ............................ GCCTTCAGGCGGACGCCCAGAGGGCGAACACA 6715 28 100.0 32 ............................ AATTAATTATTTAGATATTAAAAATATAACTA 6775 28 100.0 32 ............................ GTTCTCAAGTTGCGATATTGACATATTGTTAA 6835 28 100.0 32 ............................ ACAATGAAAGGGATTCACATAAAAGCACCTCG 6895 28 100.0 32 ............................ TTATGGGTCTTAACATTGGTTCGCTATGAAAA 6955 28 100.0 32 ............................ CAATAGAGGATGATAATAATTCGATAATCGAA 7015 28 100.0 32 ............................ ATAGCCTTCAAACTTCAATTTATGCAGGGCTT 7075 28 100.0 32 ............................ AGTAAGTCTTTGTTTATAGTGTATATCATTGT 7135 28 100.0 32 ............................ CTTCTTGAGCGGGGTGACATTCCTTGCGCATG 7195 28 100.0 32 ............................ GACTAGGTTGGGCGATAAGAGTATTATCAATA 7255 28 100.0 32 ............................ AGTGATGAATGCGTTTTTGTCAAGATCTGTTT 7315 28 100.0 32 ............................ TTATTGTAGTTTGTTCTAGTGTAGTACATCAT 7375 28 100.0 32 ............................ TATTTATTTTATAATAACTAACTTGTAAGTGT 7435 28 100.0 32 ............................ CAAGTTTCAACAATTAAACCTAAAGCGTCTTC 7495 28 100.0 32 ............................ TCTAGAGATTGGCAATCTGGCGTCATTAGGGC 7555 28 100.0 32 ............................ CTTAACAGTTGAGTTTCACTATACGCCAAATC 7615 28 100.0 32 ............................ AATAGCGCTAATCCAAATGGGGTGGCTAACTT 7675 28 100.0 32 ............................ TAATTAAGGCAGAAGAAGATGCAGAAGCAGAA 7735 28 100.0 32 ............................ TCTTTGAGAAAAGAATCTTTACAGTTAGAATA 7795 28 100.0 32 ............................ GATTAAGGTTAGTGGGTTTGCTGAGGCTGATG 7855 28 100.0 32 ............................ GTCAACGGCAAATCAGTATTCGCCCCCTTAGC 7915 28 100.0 32 ............................ GATTAAGGTTAGTGGGTTTGCTGAGGCGGATG 7975 28 96.4 32 .................T.......... TCCTGAATTATAAAATGGCTCTTGCTCTTTCT 8035 28 100.0 32 ............................ ACTATTCGCCTCTACATCAGCACACTCAGCAT 8095 28 100.0 32 ............................ AACTTCGGACAATTGATAAGCACTTATTATGT 8155 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 136 28 100.0 32 ATTCACCGCCACACAGGCGGCTTAGAAA # Left flank : TTTGTTTTAAATGATTGTTACAATTGTTCTTTTTGCAATTAAAATACTA # Right flank : TGATAAAATCAATGCTCCAATCAATGGAGATAATTCACCGCCACACGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 50-13874 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIQH01000829.1 Bathymodiolus thermophilus thioautotrophic gill symbiont strain BAT/CrabSpa'14 BATSymA_Scaffold59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 50 28 100.0 32 ............................ TTTAGTAATAGTAGAACCTAAATCAGGTTGCT 110 28 100.0 32 ............................ AGTACCTGGAACCCGAAAAGCTTGCAAAGGAT 170 28 100.0 32 ............................ TATTCGTTACTACTACTGTGGTGAATATGGTG 230 28 100.0 32 ............................ TTCAGGAAGATGATCATTATCATAAGTAAGGG 290 28 100.0 32 ............................ TTGATGATTCTGCTTTTTCTGATGTTTCTCAT 350 28 100.0 32 ............................ AACAGGAGCATTAGGAGGAAGGAAATTAGCAG 410 28 100.0 32 ............................ ATCAATAGGGTCTCTAAAAGCCTGCAAAGGAT 470 28 100.0 32 ............................ CGAATATCTTGGTGGTTCTACTGGTCATTTGA 530 28 100.0 32 ............................ AATTAAAAATTACATTATAGCAAGAGAAAGAG 590 28 100.0 32 ............................ TTTTGAGGCCAAGGTAAGCCAGAAGTGAAATA 650 28 100.0 32 ............................ ATCAATAGGGTCTCTAAAAGCCTGCAAAGGAT 710 28 100.0 32 ............................ CGAATATCTTGGTGGTTCTACTGGTCATTTGA 770 28 100.0 32 ............................ AATTAAAAATTACATTATAGCAAGAGAAAGAG 830 28 100.0 32 ............................ TTTTGAGGCCAAGGTAAGCCAGAAGTGAAATA 890 28 100.0 32 ............................ ATCAATAGGGTCTCTAAAAGCCTGCAAAGGAT 950 28 100.0 32 ............................ AAACCTATGCGTAAGCGTGTTCCTGTTACTTT 1010 28 100.0 32 ............................ ACATAGCGTGAAGACCCTGAGAATAAGTTAAA 1070 28 100.0 32 ............................ TACTTGGACTCGTCCTCCTGGTATGGTCGGTG 1130 28 100.0 32 ............................ AATTATCCCAAACAAGACGGTTTGGAACGAAA 1190 28 100.0 33 ............................ CGCAAGGTAATCTTGCTGCCTTTGCTACTGCCT 1251 28 100.0 32 ............................ TACATACTCGGTTCCCGGTCTCACTTCTCGTT 1311 28 100.0 32 ............................ AATATAAAGATTATCAGTTGTAGGGTCACCTA 1371 28 100.0 32 ............................ AAGATTGGCGAGCGCAGGCCAGTAAAAATGGA 1431 28 100.0 32 ............................ TATGTGGTCTCGTCGTCATAAACTCCATTTTT 1491 28 100.0 32 ............................ CTGAGGAGAAGTAGCATCAGTAGTAGAAGTCT 1551 28 100.0 32 ............................ TCTGATAAGTTAGATAAACTTTGGGGTAAAGG 1611 28 100.0 32 ............................ TATGTGGTCTCGTCGTCATAAACTCCATTTTT 1671 28 100.0 32 ............................ CTGAGGAGAAGTAGCATCAGTAGTAGAAGTCT 1731 28 100.0 32 ............................ TCTGATAAGTTAGATAAACTTTGGGGTAAAGG 1791 28 100.0 32 ............................ TATGTGGTCTCGTCGTCATAAACTCCATTTTT 1851 28 100.0 32 ............................ AGTGACAAAAGACTGACGAAAACGATAATTAG 1911 28 100.0 32 ............................ AATATACATATCATCAGTAACAGTATCACCTA 1971 28 100.0 32 ............................ ATTCTTTCGGCTACTAAACTTGCTGGAGCAAG 2031 28 100.0 32 ............................ ATTGACACATCAAAGAATAACAACAATTTCTC 2091 28 100.0 32 ............................ TAAAAGTATTTTTAGGCTTAGGCCTAAAAATT 2151 28 100.0 32 ............................ TTCTGAATTATAAAATGGCTCTTGCTCTTGCT 2211 28 100.0 32 ............................ AGTAGTACGAAAAATCTTTTTACGCAAACGCT 2271 28 100.0 32 ............................ AGTTTCAATAGGGCGAGAATCTTCGATAAACT 2331 28 100.0 32 ............................ AATCCTTTGAATATCAGTAACAACAGAAACAG 2391 28 100.0 32 ............................ AACATGATATAAATCATAATCATCAGGTGAAG 2451 28 100.0 32 ............................ ATAATGCAAAACTTCAACTTTATCAGTTTGAG 2511 28 100.0 32 ............................ AAGATGACCCTGGGGAGAAGTAGAACTAGTAG 2571 28 100.0 32 ............................ TTGCTCGTGTTGTTGCTGTTACTAATGAGCCT 2631 28 100.0 32 ............................ AATAGAAATGAAGTTTATGACGACGAGACCAC 2691 28 100.0 32 ............................ AACTTATCAGAGGTATAAAGAACACCACCTTT 2751 28 100.0 32 ............................ TGACCTTGGCGCTCATACTGGTAAGTCTCTTC 2811 28 100.0 32 ............................ TCTCTGATGTGAAGTATTAGATATCTCCCGTT 2871 28 100.0 32 ............................ CATTAATCTGCAAACGAGTCTTAAGACAAACC 2931 28 100.0 32 ............................ TAAAAGTCCATTCGTGGACGAAAACTCTCAAG 2991 28 100.0 32 ............................ ATACGAATAAACGAAGTCATATCAACATTAAA 3051 28 100.0 32 ............................ TATTCTTTCGGCTAAAGGTGGTTCTGGTTCTG 3111 28 100.0 32 ............................ ATAACAGGACGAGAAGAGAAATGCTGAGAAAG 3171 28 100.0 32 ............................ AGAAATACCGGGCCGAAACTTACCAGTAATCC 3231 28 100.0 32 ............................ TTATATGTCAATGGTTCGTACATTTCATTTAG 3291 28 100.0 32 ............................ TTATCGCTATCGTTCTAACCGAATTACTGGTA 3351 28 100.0 32 ............................ ATTGCAAGCCTTTAGGGTTCCTGTAACAGGTA 3411 28 100.0 32 ............................ TTTAAAAGTTTGTGAAATCACACTATAACACA 3471 28 100.0 32 ............................ AGCAAGAGCAAGAGCCATTTTATAATTCAAGA 3531 28 100.0 32 ............................ TTAATAAAGAAATAGCTGCGGCACTTTTTTGA 3591 28 100.0 32 ............................ GTTAAAGATGAGAGACAATTGCATTTCAGAAC 3651 28 100.0 32 ............................ CATCACAGGACGGAAAGAAAAATGCTGAGAAA 3711 28 100.0 32 ............................ GGTAACAGGAATACGAAAAGCTTGCAAGGGAT 3771 28 100.0 32 ............................ ATCTTGATTTTATGCATAATCCCGATAATCTT 3831 28 100.0 32 ............................ AACAGTAGTATAACCTTTACCCCAAAGTTTAT 3891 28 100.0 32 ............................ GTCTCAAAATGAGAATGTACTTCACGATGATT 3951 28 100.0 32 ............................ TCTTCCTGGTATTGGTGCTTCTGCTGTTACTG 4011 28 100.0 32 ............................ AGCAAAATAAAGTGGGCCACCAGGAGGGTCAA 4071 28 100.0 32 ............................ TGATAATTTTGATGAAGCCGTTGAATTGGGTA 4131 28 100.0 33 ............................ ACATCTTATCAAGACCCTGCTGATAAGTTAAAT 4192 28 100.0 32 ............................ TCGATTGATTTTGTTGTTCCTACTATGCAAGC 4252 28 100.0 32 ............................ AGTTGTCAAAAACAAGACGGTTAGGAACAAAA 4312 28 100.0 32 ............................ ACTTCAGGCGTATCGTGTTCCTGTTTCTGGTT 4372 28 100.0 32 ............................ GACTTATTCGGTTCCTGGCCTTACTTCTCGTT 4432 28 100.0 32 ............................ ATCGATGGACTTTTAAGAGTCTTCATAATTAC 4492 28 100.0 32 ............................ TAAATGAAATGTACGAACCATTGACTTTCCAA 4552 28 100.0 32 ............................ TGTTGACGATGTTCCTGACCCTACCCCTTCCC 4612 28 100.0 32 ............................ TGCTACTGTTCGAACTTACTTCGATAATGATA 4672 28 100.0 32 ............................ TTTCTAGATTGAGAAGCAGAATAGAGAGAACC 4732 28 100.0 32 ............................ TTATAATTCTGCTGATTTTGCCACTACTATTA 4792 28 100.0 32 ............................ AACACAACGACCGCACGGAAGAGTCAGACCAG 4852 28 100.0 32 ............................ TATCAAGAGGCTTGGGCACCTTACCGTTACCG 4912 28 100.0 32 ............................ AACACGATTAATATCAGTAAGAACAGTAACAG 4972 28 100.0 32 ............................ TTTAAGTGCTCCAATGGCATGCTTTCATCCTT 5032 28 100.0 32 ............................ CCACAAGGTCATCTTGGTGCTGTTGCTACTTC 5092 28 100.0 32 ............................ AACTTAATACTAAGCGTCCTTATGAAGAGTCC 5152 28 100.0 32 ............................ TTTGCAAGCCTTTCGCATTCCTGTAACAGGTA 5212 28 100.0 32 ............................ TGAGTATGCCACTATGTCTACTAAACCTGGTA 5272 28 100.0 32 ............................ TTCAGCACCACCAGCATGATAAACAGCTTGAC 5332 28 100.0 32 ............................ GTCTAAATATCGTAAGAAAATGTCAAAAAAAC 5392 28 100.0 32 ............................ AGAAAACGAACCGGGTAATGATAGTAGCATTG 5452 28 100.0 32 ............................ TCCCCATGGGGTGCTATTGCTTCAGGTGCTGG 5512 28 100.0 32 ............................ CGGGTAAAACTTCATCTACATAAATGGGAGTC 5572 28 100.0 32 ............................ CAGGAGTATTGGAACGAAACTTACCCGTAACA 5632 28 100.0 32 ............................ TTACGAAGGTCTTGGACTTCACGCTGATGAGC 5692 28 100.0 32 ............................ TTGCACAAGGTTAATTGCTTTATTACTTTGAC 5752 28 100.0 32 ............................ AGCAGGAGCATTAGGAACAGTAAAACCAGCTG 5812 28 100.0 32 ............................ TTTGCAGGCTTTTCGTGTTCCTATTTCTGGTA 5872 28 100.0 32 ............................ TACTGCTGTACCTCTTGCTCAAGGAGATGTAT 5932 28 100.0 32 ............................ AAGTGACTGAGGCTGAAGACCAGTATGACCAG 5992 28 100.0 32 ............................ AAGATTAGCAAGCGCAGGCCAATAAAAATGAA 6052 28 100.0 32 ............................ TGTAACAAAGGATTGACGAAAACGATAATTAG 6112 28 100.0 32 ............................ ATTGACGAGAACGCTCAAGACGACAGCCAACA 6172 28 100.0 32 ............................ ACTCCGTGGTTCTCTCCAAACGATGATACTGC 6232 28 100.0 32 ............................ TATTGATTCTTCTATTTCTTTTATTCCTAGGC 6292 28 100.0 32 ............................ AGCACGAGCGAATTGCTCAAGCAATTCTTGCG 6352 28 100.0 32 ............................ TTTTGAGCAAAGGGAAGAGCAGAGGTAAAGTA 6412 28 100.0 33 ............................ AACGTAACCGCGATTTTCAAGAACGAATGTCAT 6473 28 100.0 32 ............................ AGTAGTCTCATCTATACGAGTGTAATGGTCAT 6533 28 100.0 32 ............................ GACTACGCTCAAGACGACAACCAACGCAACGG 6593 28 100.0 32 ............................ AATAGTCGAATAACCGAATGTCCACAATTTCT 6653 28 100.0 32 ............................ TCCTGAAAAAGGCTCTTCAGACGAAGTCTGAC 6713 28 100.0 32 ............................ ATTAAGATGAAAGAAATCCTTAGGATAAAGGT 6773 28 100.0 32 ............................ TCCAACATACCTCTAGAGAGTGGCAAAGATTT 6833 28 100.0 32 ............................ AAGATGACCTTGAGGAGAAGTAGAACTAGTAG 6893 28 100.0 32 ............................ TTGCAAGAACGTAGGCTAAAAAAGCTATTAAA 6953 28 100.0 32 ............................ TACTAAAGGGCATGACGGTTATACCCGTCTTA 7013 28 100.0 32 ............................ AGTTTTGGATTTCTGATTCAATGTCGTCCAGT 7073 28 100.0 32 ............................ TGACAAATAAGCATAGATTGTCTAATGTTGTT 7133 28 100.0 32 ............................ TCATTAGCCAGTGCATATCTCATACCCTCGTT 7193 28 100.0 32 ............................ AGTTTACATAAGGGCTACATACCCTAACAGAA 7253 28 100.0 32 ............................ TCTCAGATAGTATGATTGGCATTAGCCAGTGC 7313 28 100.0 32 ............................ TATATAGGGGTCTAAAAGCCCAAAAATACGAT 7373 28 100.0 32 ............................ AACAATGTAACAAGTTTTAGGCTACTGGACAA 7433 28 100.0 32 ............................ ATGGAGTTCAGAAGTAGCAACAGCACCAAGAT 7493 28 100.0 32 ............................ ACATACGATGAAGACCTTGAGAGTAAGTAAGA 7553 28 100.0 32 ............................ ACCAATAACACCAGCTGCAGCTGCAGGAGTGC 7613 28 100.0 32 ............................ TTTAGTGCTCCCATGGCATGCTTTCATCCTTT 7673 28 100.0 32 ............................ AAGGAGAACCTCCAGAACCTGATTTAGCCAAA 7733 28 100.0 32 ............................ TTTATTAAATTGCAGCTCTTCCAATTGGGCAC 7793 28 100.0 32 ............................ CACTTTAGGTCCTGATTCTGTTTCTATTGTTA 7853 28 100.0 32 ............................ AGTAATTTTTTTCATAACATAGCGAGCACAAT 7913 28 100.0 32 ............................ TTGGTATTCTGTCAACAACGATACTGCTATTC 7973 28 100.0 32 ............................ TTATTGAGAACAGGTTGCTCACCAAGATTAGC 8033 28 100.0 32 ............................ TCCAGAAAGACCAGGGCGAAACTTGCCAGTAA 8093 28 100.0 32 ............................ CCTCATCTCTAACGGAGAAAGTGATCATTAAT 8153 28 100.0 32 ............................ ATAATGCAAAACTTCAACCTGATCGGTTTGTG 8213 28 100.0 32 ............................ TGAACATGGTTTTCTTCATGGTTTTATTACTG 8273 28 100.0 32 ............................ AAGAAGAAAGATCACCACCGGAAAGACCGGGC 8333 28 100.0 32 ............................ TTCGGTTTTAAGGAGAATGTAATCCTCAAGCA 8393 28 100.0 32 ............................ CCTCATCTTCTACGGAGAAAGTGATTATTATT 8453 28 100.0 32 ............................ TTTAGCGGACCCAATGGCTTGCTTTCATCCAC 8513 28 100.0 32 ............................ AATTATCCCAAACTAAGCGATTTGGTACAAAA 8573 28 100.0 32 ............................ ACCTTCACGGTCAAGTGTAGTAGTAACATCAA 8633 28 100.0 32 ............................ TAAGACGTCTACTACTGACTCTACTTCTCCGC 8693 28 100.0 32 ............................ TCTAGTCGTAAAAGACCTAGAATTACGAGGAT 8753 28 100.0 32 ............................ AATTGACCCTGTTATGGATGCTGTTCGTTTTT 8813 28 100.0 32 ............................ TAATGATGATACTGCCGTTCGTGAGTTCGTTC 8873 28 100.0 32 ............................ ATCAAAGGATCAATAGGAGTTGCCATCCTAAT 8933 28 100.0 32 ............................ TTTTTAAAAGATGAAGAACCCATTATTTATCC 8993 28 100.0 33 ............................ AATGGTCAAAAACAAGACGAAGAGGCACAAAGA 9054 28 100.0 32 ............................ TCCTGAATTATAAAATGGCTCTTGCTCTTGCT 9114 28 100.0 32 ............................ TCTTGATCCCTTGATGGACAATGTTCGTTTTT 9174 28 100.0 32 ............................ TTTAGACTTCGAGAAAAGTAATCTATCCTGGC 9234 28 100.0 32 ............................ ATTAACGGATCAATCGGAGTAGCCATCCGAAT 9294 28 100.0 32 ............................ TGTAATAGCATCATGTGCTCTTTTAGGATGTT 9354 28 100.0 32 ............................ TCTATGTACTTCGTACTGAGCAATAAACACCG 9414 28 100.0 32 ............................ TCTTTATCAGATAAGCGAGACGGCGTATTATC 9474 28 100.0 32 ............................ ACCTTTGGCAGAGAGAATAGGATTAAGTCCAG 9534 28 100.0 33 ............................ TTCTTCCCGTGACTTGCCCGTTTAATTTGTAAT 9595 28 100.0 32 ............................ ATTAAAAGCATATTTTGTACTTTTGTAATTGC 9655 28 100.0 32 ............................ GTTTATAAAGCCCATATCTTCTGCACCAAATT 9715 28 100.0 32 ............................ AGTAGGAACACGATTCCATTTAACACTACCAA 9775 28 100.0 32 ............................ TACTTACTCTATTCCTGGTTTGTCCTCTCATT 9835 28 100.0 32 ............................ AAGGCAAAACTGAAGTAAAATAGTCGTGAGCT 9895 28 100.0 32 ............................ CTTGGCATTTGGCTCAATACTTTACTACTCGT 9955 28 100.0 32 ............................ ACCACCGAGATACTCGGCGCGTTGGAGACGAG 10015 28 100.0 32 ............................ ATTATCGGCAATATTAAAGTCGAGTATGTTAA 10075 28 100.0 32 ............................ TACTATGGTTGATACTGCGGCTATTGGTATTC 10135 28 100.0 33 ............................ ATATTCTTTCTGCGAAAGGTGGTATGGGTGCTT 10196 28 100.0 32 ............................ ACACATATAATAACGAATGTGCTTACCAGTAG 10256 28 100.0 32 ............................ TTAATGTCTTGAATACCGTAGTCTTTTGCAAT 10316 28 100.0 32 ............................ AGTCATTTTATAATTATCGGTATCATCTGACA 10376 28 100.0 32 ............................ TTAATACGGTAAAAACGAAAGGAAAAGGGAAA 10436 28 100.0 32 ............................ GTTAACAGGTACGGATGCGCACAAAGCACTAC 10496 28 100.0 33 ............................ AATTGTAGAAAAACCAAGTTTCCAGCAAGACTC 10557 28 100.0 32 ............................ AAGTTGGGCAGAAGACTTATTGACGTTAACAT 10617 28 100.0 32 ............................ TCCAGTTTTTGTTCCTTTGAAAGCGTCAGTGA 10677 28 100.0 32 ............................ ACCAAGAATTATCCCTAATCTGCCATAAAATT 10737 28 100.0 32 ............................ TTCGAGTCGGCCGCTTATTGTGCTCGCTATGT 10797 28 100.0 32 ............................ ATCTTAGTAGCAGAGAGAATCGGATTGAGACC 10857 28 100.0 32 ............................ TGATATTCGTGCTTATTTTGATAATGAGCCTG 10917 28 100.0 32 ............................ ATTAGCCATCAAACGATTAGGACAATGTAGAT 10977 28 100.0 32 ............................ GTGTTATTTAGTTCAAGATATTTAACTAGCAC 11037 28 100.0 32 ............................ CATAATTGAGAGGTGCTTTAAGTTTTTTGGTG 11097 28 100.0 32 ............................ AGTATTAGCACCGAGGTCAGGCATAGTAGCCA 11157 28 100.0 32 ............................ AGTTTGGCTTATGGGAGGTAATGAAAATGACC 11217 28 96.4 32 ........................A... GTCAAGACCAAAGGTACTATCATTGCCACCCA 11277 28 100.0 32 ............................ AAGTTGCTTAATAGTTATAATAATAATGATAG 11337 28 100.0 32 ............................ ATTGTTAATCAAATCGATTAAACTTTGGCTTT 11397 28 100.0 32 ............................ ATATTGACAAAGGATTGGTTGTGCCGTCTGTA 11457 28 100.0 32 ............................ CCCTTCCGGAGGGAATTTGTGTTGAATAATAT 11517 28 100.0 32 ............................ TGAACTACAGGAACTTGACAGGTTGGAGCAAG 11577 28 100.0 33 ............................ CTTCAAAGGCTTACGAGACACAGCAATAATGTC 11638 28 100.0 32 ............................ TTATTAAAAGTTTTGCCAGTCCTTCGGCAGCT 11698 28 100.0 32 ............................ ATTCTAAGAATTTTGTCAAAAAGTGCTGCTCT 11758 28 100.0 32 ............................ TTAAAGTCACCAACATCAGAAAAATCACGAAA 11818 28 100.0 32 ............................ TGATAATTTTGATGAAGCCGTTTCTTTAGGTA 11878 28 100.0 32 ............................ TACTATGGTTGATACTTTAGATACTGGTATTT 11938 28 100.0 32 ............................ AGATACTGGTATTTCTGTTGGTTCTCTTGCTG 11998 28 100.0 32 ............................ TGAGTATCTTTGTGAGCATTGGGCACAGGAGT 12058 28 100.0 32 ............................ CCTTCTAAAATTCTCTTCATTCATAACAAAAC 12118 28 100.0 32 ............................ AGCCTAACCAAATCAGGACAACCCAAAAACTC 12178 28 100.0 32 ............................ CGCAGTATAAGAACGAGTGGCAAAATCACGAA 12238 28 100.0 32 ............................ TGAACATTCCCCTTGGAGACCATTTGCTCCAA 12298 28 100.0 33 ............................ ATAACCAATTAAACAAGATAGACAGAAGCCTAT 12359 28 100.0 32 ............................ AGTAGCAAAGGCACCTAAATGGCCTTGAGGCG 12419 28 100.0 32 ............................ TATTATGTCCTCTAAACTTGGTGGTTCTTCTA 12479 28 100.0 32 ............................ GATAAAAGTAGGCTCAGAAGGAACAGCCACAA 12539 28 100.0 32 ............................ ATCAGCGTGAAGTTAAAGATTTGCGTGCAGCT 12599 28 100.0 32 ............................ ATTAAACGATTAGGACAATGTAGATCAATATG 12659 28 100.0 32 ............................ GCAAATAAAAAAAGGGAAAAACTGGAAAAAGA 12719 28 100.0 32 ............................ ATCGTCTTATACTGTTCCTGTTATGTCTGGTC 12779 28 100.0 32 ............................ TATTCGTTATTATTATTGTGGTGAATATGGTG 12839 28 100.0 32 ............................ TCATGATGAGGCTGCCCCAGTCCAACATTAGT 12899 28 100.0 32 ............................ AACAAGACTCGAGTTCTCGAGAAGTAAATAAT 12959 28 100.0 32 ............................ GCTCTCGCCTTCTTTTCTTAGGGACTATAATT 13019 28 100.0 32 ............................ ACTAAATCATATACAAACCTTGACATTATTAT 13079 28 100.0 32 ............................ GCACCATCCGACCTTAAGGTGCTTGTGTTATC 13139 28 100.0 32 ............................ GGACGACTTAAGGTTTGGGATTGACACAAAGT 13199 28 100.0 32 ............................ CGAATGGATTGCAACGAGGAAAATTACAATAA 13259 28 100.0 32 ............................ CTTTATAAAAAGAAGTCTTGCTATAACTAAAC 13319 28 100.0 32 ............................ ATAAACAAAGTTTGCCAACCTCGTTGAACCAC 13379 28 100.0 32 ............................ TTGCTAATCATTTTTTTACTCTCAATCTATTT 13439 28 100.0 32 ............................ AGGAGACTCTTGTTCACCACAAAGTTTCTGCC 13499 28 100.0 33 ............................ TCCAAATGTTGCCTGACCAACCGTTTTTAACAT 13560 28 100.0 32 ............................ TCCGAAAAACTCGCCGCTACATTAATCGCATG 13620 28 100.0 32 ............................ TCAACGCATCAATCTGCTTAGAACCAGCAACC 13680 28 100.0 32 ............................ AACTTCGGACAATTGATAAGCACTTATTATGT 13740 28 100.0 32 ............................ TGATAAAATCAATGCTCCAATCAATGGAGATA 13800 28 92.9 17 ....................A...C... GGAGATGAGCTTTTTTG A [13823] Deletion [13846] 13846 28 92.9 0 ....................A...C... | A [13869] ========== ====== ====== ====== ============================ ================================= ================== 231 28 99.9 32 ATTCACCGCCACACAGGCGGCTTAGAAA # Left flank : TTTTGTTTTAAATGATTGTTACAATTGTTCTTTTTGCAATTAAAATACTA # Right flank : GGAGATGAGCTTTTTTTGATTCACCGCCACACAGGCTTAGAAACCGAAACTAGTTCAACTTCATTTGGCACTAAATACACTGCTAAACAGGTGGATTGAAAAAAGACGACAAAGTTATATTTTTAACAGATATGCTTATTGTCGCCCACAACTTAGAATGTATTGCTACACCAATCATCTTCACCATTCCCCTGCAATTATTAAGTTACCATGTTGCCCTTATCAAAGGCACAGATGTAGATCAACCTCGTAATTTAGCCAAATCAGTAACTGTGGAGTGAGGCTGATTTAGGTAAAACTCTATCGATTTTATGTCTCATTCCCACTCTATACATAGAAATACACCTTCTTTAGTTTCTTATTTAGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //