Array 1 178061-176645 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBQE01000006.1 Salmonella enterica subsp. enterica serovar Typhimurium strain NY_FSL S10-1269 NODE_6_length_294209_cov_12.0335_ID_4038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 178060 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 177999 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 177938 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 177877 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 177816 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 177754 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 177693 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 177632 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 177571 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 177510 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 177449 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 177388 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 177327 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 177266 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 177205 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 177143 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 177040 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 176979 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 176918 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 176857 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 176796 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 176735 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 176674 29 96.6 0 A............................ | A [176647] ========== ====== ====== ====== ============================= ========================================================================== ================== 23 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGTGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 196235-194193 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBQE01000006.1 Salmonella enterica subsp. enterica serovar Typhimurium strain NY_FSL S10-1269 NODE_6_length_294209_cov_12.0335_ID_4038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 196234 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 196173 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 196112 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 196051 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 195990 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 195929 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 195868 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 195807 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 195746 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 195685 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 195624 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 195563 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 195502 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 195441 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 195380 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 195319 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 195258 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 195197 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 195136 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 195075 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 195014 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 194953 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 194892 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 194831 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 194770 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 194709 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 194648 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 194586 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 194525 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 194464 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 194403 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 194342 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 194281 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 194220 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //