Array 1 102185-100958 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAWI01000004.1 Streptococcus oralis subsp. tigurinus strain JPIBVI Contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 102184 36 100.0 30 .................................... AAAATAAAAAAAGTTATTGACAACGAAACA 102118 36 100.0 31 .................................... ACAACAAAAGAGACAGAATAAGCAACAACAA 102051 36 100.0 30 .................................... TTACGTGATCCGATCAATGGGAAGCCATTA 101985 36 100.0 31 .................................... ATTCAAAATTATTGATAAAGCATTGCTTGAT 101918 36 100.0 30 .................................... GCCCATAACCACGTTATCGCTTACGTTTCC 101852 36 100.0 31 .................................... CGTATTTTCACAAAGAGTACACAAAATTTTC 101785 36 100.0 30 .................................... TTGGTATGTACTCAACGCAGATGGCTCTTG 101719 36 100.0 30 .................................... ATGCGACAATGGAGACAGACAAGACGCTTG 101653 36 100.0 30 .................................... GGCAGTCATGTCCACTTCAAGATCCTCAGT 101587 36 100.0 30 .................................... ATTGCTTTTCCTAGTGGGGTTGATGTATCA 101521 36 100.0 30 .................................... ATAGCTTCTCGCTGGTTGAAGGACGATGGA 101455 36 100.0 30 .................................... ACGAAAGGAAACATGAAAACAAATGCCTTT 101389 36 100.0 30 .................................... CTTTATCCTCTACTTCTTACGGTTTCCCGC 101323 36 100.0 30 .................................... AAATCAAAGGGGGTATTTCCGTACATTTTA 101257 36 100.0 30 .................................... TCGGGCTATATTTGATTTTGAATTCGAGTA 101191 36 100.0 30 .................................... TCCAGACCATGGATATTATCACAAAGACCC 101125 36 100.0 30 .................................... TCAAGACGAACATTTAAATAATTTGCAATC 101059 36 100.0 30 .................................... CGCAGAGAGGTCTTGCATTAAGTCACACAA 100993 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== =============================== ================== 19 36 99.9 30 GTTTTAGAGCTGTGTTGTTTCTAATGGTTCCAAAAC # Left flank : ATCAGCTCAATGACAAACCCGAAGTCAAGTCCATGATTGAAAAGTTGGTTGCTACGATTACAGAATTGCTGGCATTTGAGTGTTTGGAAAACGAGTTAGACCTAGAGTATGATGAAATCACCATTCTAGAGTTAATCGATGCACTTGGTGTCAAAGTCGAAACTCTGAGTGATACACCTTTTGAAAAGATGCTAGAGATTGTCCAGGTTTTTAAATATCTTTCTAAAAAGAAACTCCTTGTTTTCATCAATGCATCAGCCTATCTATCAAAGGATGAGTTAGTAAATCTGATAGAGTATATCCAACTAAATCAACTAAGGGTTTTATTTGTCGAACCTCGAAAAGTCTATGATTTTCCGCAGTATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGAGTAACAATTGGAACCTAACGAGCTGAAGTCAGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATCTTTCTACGAG # Right flank : AGCTACTCATTTTTTGAGTAGCTTTTTAACTATTCCAACTCTACACATAGCTCATTCCTTTATAGAAAAGGAAAACGGCTAGTGCGATAAAAAATAGGGCTGCTCCGATTCGCTGGCTGGTACTATACATCCTTTTTCCCCATTTGACTGGAAAGATGATTGCTAGAAAGGCCCCACCTACTGCGCCGCCAATATGCCCTGCTAGGCTGATTCCTGGGATCAGAACACTTCCAATGATATTTATCACAAAAAGCGTCAGGTAGGATTGCCCTAACTGCTGGATATAGGGGTTGCGAGTTGCGTAGCGCAAAACAATAATCGTAGCAAATAGTCCGTAAAGAGAAGTGGATGCTCCTGCTGCAAGGACTTTCGGTGTAAAAGCAAACACAAAGAGATTGCCCATCATTCCTGATAAGAGATAGAGAAAGAAGAACTGCTTAGAGCCGAAAATCTCCTCCACCTGTCGTCCAAGAAAGTAGAGAGAAAGCATATTGACAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCTAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 16250-16481 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAWI01000008.1 Streptococcus oralis subsp. tigurinus strain JPIBVI Contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 16250 36 100.0 30 .................................... TAATTATTTCAAGATGCTTTAATGAAGACC 16316 36 100.0 29 .................................... TGTATGCCTTGTACGCAGCTCAAGAAGCG 16381 36 100.0 29 .................................... CTTTGCAATTCAACATGATTACCGCAATG 16446 36 97.2 0 C................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 99.3 30 GGTTTTTGTAGTCTCCAAAATTGTGACCGATAAAAC # Left flank : CATTCTTCAGGCACGAAATTAACGACATAAGCAGCAACTAAACTCGCCCCTACAAGTAAGCCTGTTCCTAGATATTGCCCCGCATAAATATGCCATTTCTGTTTATTCTGTGATAGCTGTGCAAATAAAATAATTAAAATAATTAAATAATCGATACTGGTGGAAATATAAACACCAATAGCAGATATGATTGTCTGTCCCATAAAAACCTCCTGTATTAGTCAGTAATAAATCAGCAGATTTTAGGAGAGCACAGACACATTAATTTAGCTATCGCTAGTGGGTAATGTCGAACGTAGGAAAGCATTTTACTCCTCCTCAAAACGTAGTTACAAAGTAATTTCTAACTGGAATTCGGTGACTACTTCTATGTAAAGTATAACATACTATACTTTACTTCGTAAAGTGTGGGCTCTCCGAGGGGGCTTGCAGACAGTTACTCGGCTTTTCAAGCCGAGTAACTGCGCACCTTCATGGTGTCATTAGCTGATACCATTTGA # Right flank : CCTCAATAAAAAAGCTCTCTGAAGTCAGAGAGATGATTTGAGCTCGGGCTAGAATCCTAGTGAAAAAGATGAAACTCCTTGTGTTCATCGAACACTGTTTCCTTTCCCTATTTTCATACGGATTTTTAACGCCTTTAGCATCATGATTCTTGCCGGATAAACCGTTTATAGACTAGGCGATGAGCCGAAGATTGTATAAAAATTTTAGTGAAACAAAAAATCTCCCCGAAGGGAGATGATTTGGTTTATTTTACCTTACAGTGCTAGGAACCGTAACCGAAGATAATACTTTAGTATATCGAGGTAGGGTGACAAAAGTAAAAAAGCTCTCTGAATATCAGAGAGCTCAAGTCTTGCTGGATAAAACGTTTATAGACTAGGCGACGAGGCGAAGATTGTACTAATGGTACATCGAGCTGAAGCCAACGAAGTATAGAAACGTTTTAGACGCAAGATTAGCGACGAAGTCCGAGAGAGTTGATCAACTCACGGTAACGGTT # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTTTGTAGTCTCCAAAATTGTGACCGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //