Array 1 61110-59678 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNXW01000001.1 Escherichia coli strain HH20H NODE_1_length_670541_cov_215.791722, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 61109 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 61048 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 60987 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 60926 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 60865 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 60804 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 60743 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 60682 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 60621 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 60560 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 60499 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 60438 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 60377 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 60316 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 60255 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 60194 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 60133 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 60072 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 60011 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 59950 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 59889 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 59828 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 59767 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 59706 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.1 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 87875-86809 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNXW01000001.1 Escherichia coli strain HH20H NODE_1_length_670541_cov_215.791722, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 87874 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 87813 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 87752 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 87691 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 87630 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 87569 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 87508 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 87447 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 87386 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 87325 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 87264 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 87203 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 87142 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 87081 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 87020 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 86959 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 86898 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 86837 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //