Array 1 39383-39995 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYVP01000012.1 Listeria monocytogenes strain LM07-01345, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 39383 29 100.0 35 ............................. TAAAAAGGTTTATTGTTATCACCAGCTTTCATTAA 39447 29 100.0 37 ............................. TTTATTTCTCCTACGCTTTTCTTATTTCTGTAAATAA 39513 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 39576 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 39640 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 39705 29 100.0 36 ............................. CAACTTGAAACCTAGTCTGATAACATAATCAACAAT 39770 29 100.0 36 ............................. ACAATAATAGGATATTTTGGATTTGTCTGCGTTCCT 39835 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAGAGTGTAGTATT 39901 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [39924] 39967 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 94.8 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCAAGTATCAAAGAAGTTATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAGAGTTGTAAATGGTTGGGGGAAGGGGAATTTGGCGGTATTTGCTTGGGGAAATCTTCAGGATAAGGGGAGGTTTTAGATGTTTTTTGGTAGGTCGACAGAAAGGGGCGTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGAG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCCAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCATTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGAGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 55060-56385 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYVP01000012.1 Listeria monocytogenes strain LM07-01345, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 55060 29 100.0 36 ............................. TTCATTACAATACGGATAATATTCATGTTCATATTG 55125 29 100.0 35 ............................. TCGCTTGTGTATAAACACAAGTCTACCGCAACACC 55189 29 100.0 34 ............................. TAACTTAAATAAGCATAAGGAAATGCCGCGCATG 55252 29 100.0 35 ............................. GAAGGATAAAATATTTTAAGAGTAGGTGAACTCCT 55316 29 100.0 35 ............................. CTATTTTTATACGTTTTAAAATGCCAGTTATCAGT 55380 29 100.0 35 ............................. TTGCTTCCCAACGAGCTAAATTTGCGTTAAATCGG 55444 29 100.0 35 ............................. CTCACTTCCACCACCTCGCATTCTGTGTTTGTTTC 55508 29 100.0 37 ............................. CATGGGATAAAGAAATCATCATTGCTCCCCCACGCAT 55574 29 100.0 36 ............................. AAATAATATTCGAAGGCAACAAACTAAATCTTTTTA 55639 29 100.0 36 ............................. TCGTTTGCAAATGAATCGCTCTTCTGGCTCGTATCC 55704 29 100.0 35 ............................. CGGGGAATATCTCTTTAAAGCTTAAATACGAATGC 55768 29 100.0 37 ............................. TTATCAAAAACTTCAGCTAAGGTTGCGGGTAGTAATT 55834 29 100.0 36 ............................. TCAACAAGCGAACCACTAACGCCCGGAGCGTCTAAA 55899 29 100.0 35 ............................. CCGGAAAATTGTGATTTAATGATTAGCAATCCACC 55963 29 100.0 37 ............................. AGAAGTGGAATACGTTGGAGTGGTTAAATATGACACG 56029 29 100.0 36 ............................. ATTTAAGTATTAATGTTTTTAAAAAGTCTGATTTAT 56094 29 100.0 38 ............................. AGTCCCATATCGTGATAGTATGCTACGCGATCAAATTC 56161 29 100.0 35 ............................. CAAGTAACAGGAAAAGGACAAGTATATCTATTAAA 56225 29 100.0 37 ............................. TACAACATGAGCTGGCTATTCTCTTCTGCTGAAACAG 56291 29 100.0 36 ............................. CCTAATACACCTAAACTACTCTTATATATAAAAACA 56356 29 93.1 0 .......................A....C | C [56379] ========== ====== ====== ====== ============================= ====================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAAATTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGTGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATAAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGTATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAAATTTTGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGTGGAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAGTAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACTACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCCCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCGAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //