Array 1 285655-286414 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDLY01000002.1 Salmonella enterica subsp. enterica serovar Rubislaw strain 227 NODE_2_length_545999_cov_22.9924, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 285655 29 100.0 32 ............................. CCGTCCACGGTACAACAATCAACGCCGGGAAT 285716 29 100.0 32 ............................. ACTGACAAACAGCGTGAGCATATCGCGCAACT 285777 29 100.0 32 ............................. TCTTCAGAAATGATGAGTTTTTCCAGTCCGTC 285838 29 100.0 32 ............................. TGTCGGACAGTATCTGGTTGGCTATGGGGGGC 285899 29 100.0 32 ............................. GAATTAAACGTTACTGGCATGATACCGTTCGG 285960 29 100.0 32 ............................. GTTTCGCAGGTACGGTTAGTCCGGCCAATTCA 286021 29 100.0 32 ............................. GCGACGGCGTTTATCAGTGCGAACAGGACCAG 286082 29 100.0 32 ............................. TTTTAGACATGGCAAACGCCGACAGGATGAGC 286143 29 100.0 32 ............................. AATCAGAAACAAACAAGACTTACTGGATGTTG 286204 29 100.0 32 ............................. GGCGTCGAACCAACAGTGCCCGGGCAGGATAC 286265 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 286326 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 286387 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTATAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 302559-303972 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDLY01000002.1 Salmonella enterica subsp. enterica serovar Rubislaw strain 227 NODE_2_length_545999_cov_22.9924, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 302559 29 100.0 32 ............................. GATGTGTCAGGAACGATGCAAATTGCGGACAG 302620 29 100.0 32 ............................. AGCTATATGTCTGACCGTGACGGGTCGGTTCG 302681 29 100.0 32 ............................. CGTCGCTTGCGTCCGGTCAGCGTGCGGGCGGT 302742 29 100.0 32 ............................. ATCGCGCCCTCATCTCCCCAGATTTTTGATAC 302803 29 100.0 32 ............................. TATCACTACCGGATCGGATCGGCTGAATTGAA 302864 29 100.0 32 ............................. AATATATAGTTATATATATGTTAAATAACCTA 302925 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 302986 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 303047 29 100.0 32 ............................. GTTTCTCCCTTGAGTAGTTCCTTTCGATAATT 303108 29 96.6 32 ................A............ CAAAACTGGATTAATGAGGACGGGTACGAAAT 303169 29 100.0 32 ............................. TTTACCCCCTGTTTACTGCAATAGCGCGGATA 303230 29 100.0 32 ............................. GTCGCGGGTCGTGTGTCTGTTTTATTTGACGT 303291 29 100.0 32 ............................. CCATCTTTTTCGCGCCTTGTTGGTCAGGCAAT 303352 29 96.6 32 ....A........................ CACATCTCCAAACTGGAACGCGCCAACGCTGC 303413 29 100.0 32 ............................. GAAAACTCTAAATCCAGCACGATTCGTTGTTT 303474 29 100.0 73 ............................. CTATTAATGCAGATTCTAAAAGAATTGCAGAAGTGTTCCCCGCGCCACCAACTCCTTGGGGGAAAACGGCTTG 303576 29 100.0 32 ............................. GCCAGCGCTAGCGCGCTCGCGAAATGGGAGCC 303637 29 100.0 32 ............................. GCTATTGTGATGCAGTCAATGCAATGGGGTAT 303698 29 100.0 32 ............................. GCCATACCCACAACCTCCAGACGCCCAAGCCC 303759 29 100.0 32 ............................. CAGGAGGAATCAACTCTCGACCCTGCTGAACC 303820 29 100.0 32 ............................. TTTACGGGCGCACAGCGAAAACTACCGAGGAG 303881 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 303943 29 86.2 0 TAA.........T................ | A [303967] ========== ====== ====== ====== ============================= ========================================================================= ================== 23 29 99.1 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAGATGATTTGGCAACAAATCACGCAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAATCAGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTGGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTTGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //