Array 1 175678-175008 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOID01000001.1 Nitrosomonas europaea strain Nm35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 175677 36 100.0 35 .................................... TCCGTTTGCCTGAACATTGCCGACATTAATATTCT 175606 36 100.0 35 .................................... CACTGCCCGAGCAGTATTCTCCGAATCTACGCCGA 175535 36 100.0 35 .................................... ATAGGTCTCGTTGGGAAAGATTTCGGCATGGAATC 175464 36 100.0 34 .................................... TTAGGATCACCATAACTGATCGCGTTAGCCAAGG 175394 36 100.0 35 .................................... GTAGTAATTTTTGTCTTCTTTCTTGATTCTGGTTT 175323 36 100.0 35 .................................... GTAGTAATTTTTGTCTTCTTTCTTGATTCTGGTTT 175252 36 100.0 34 .................................... AAATACTTTTCCTCATATGTCTCGAACCAGTAGA 175182 36 100.0 33 .................................... CATCTTTACTTCGAAACCATACGGCCAATAGAT 175113 36 100.0 34 .................................... AACGCCCACCTATCTTTTTCAACAGCAGGATACC 175043 35 75.0 0 ...........A......A...CGCC.....-..TG | A [175021] ========== ====== ====== ====== ==================================== =================================== ================== 10 36 97.5 35 GAAACACCGATGCCCTGATTTCAAAGGGATTGAGAC # Left flank : ACCGGATCACGATTCCGGAGATTGGGAATAAATATGAGAATAAGTGCACCACTACCCGGGTCCCATGCCAGCGGATCATTTTTTGAAAAGACAGGCAATGAGTGACTTTATCATCTGCTACGACATCACTGACCCACGCAGATTAGGACGCTTGTATCGTTATCTGATCAAACGGGCAGTACCATTGCAGTATTCGGTATTCCTGTTCAGGGGTGACGATCGTCAGCTTGAACGCTGTATACAGGATGCCATCGAGCTGATTGACGAAAAACAGGACGATTTGCGGGTTTATCCACTACCGGGCCGCGGCCTGAAAGCGCGTATCGGCCGCCCTACACTGCCGGAAGGCATACAATGGAGTGGCCTGCCGGCCAAATGGTAAAATATAATGTATCTGGAAGAAACAGTCGTTTAAAAAGAGGTAACTTGCAACATCCCATCAGTTTTCCTTATCGCCCTTTGCAATTTATTGATCTGGCGGAAGAAAAACACGGTGGTCA # Right flank : CGTAAATGCGTTTTGTCTGCTGTTTTCCCCGGCCATATATATCCAAGAATAATTCAACGTTGGCAACGTAAACCCGCAACAGCTCCAGATACACCCGCTTTACTTGTTATACTGCTCAGCCTGAAAATAACTGATCAAAATTACATTGATGGAGGAGAAATGGATATTTTGAGTTTGGTGGCAGGATTTCTGGCGGGTGCGCTTACGATTTATCTCGCCAGTTATTTCATGAAGCCGAGTGAAAACAAGACACAAAAAACGGTCGATGCAGGCACTATCAATTTGTTCGATCAGTTGTGGCAGACACATGAGCGCTTGCTCAACGAAATGAAGCAGGATGTAGAAAATCCCGATTTCAAATTTCACCGGGAATTTTATGTGCTGAAAAAAGGCTGGGGGTGGGAGCGCTGGGGATTTCATCGCAGAGGTCCCTGTATCGCCTATTTCCTGGAGGATCACAGTGATCTGCTGCCGTTGCTGGATTCGCTGACTTCTTACGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACACCGATGCCCTGATTTCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 1137-1750 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOID01000004.1 Nitrosomonas europaea strain Nm35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1137 37 100.0 35 ..................................... TGGCAATCCTTGATCCATAACGAGATGACTAGCTT 1209 37 100.0 35 ..................................... ATTGATGTTACAATCCGAGAAAACCGAGGCTCCTA 1281 37 100.0 36 ..................................... AGTGGCATCAGTAATAGATTTGTCAGGGTCACAGGC 1354 37 100.0 35 ..................................... TCTACCTCTCTTGATCTCCATCAGGAAATTGCCAG 1426 37 100.0 34 ..................................... TTTAAATCGCTAAGAATTACTGACCCTAATCTAA 1497 37 100.0 35 ..................................... ACATCGTAATAGGCTGCATTACTGGCCCGTGTCAA 1569 37 100.0 36 ..................................... ATGATGTATTCAGGTATCAGCGTCTGTGCCGGTAAT 1642 37 100.0 35 ..................................... CCGGTAGTCGACCTATTAAAGCCATCATTTAATTA 1714 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 9 37 100.0 35 GTAGCGCCCGGTCACCAGACCGGGCGAGGATTGAAAC # Left flank : GGTTATCTTCCTTTCTTGGTTAGATAATCATGCTGATCATTGTTACTTACGATGTTTCAACGGAAACCAGAGCAGGTCGCAAGCGATTGCGCCGTGTTGCAAAATTATGTGAAAGTATCGGGCAACGTGTGCAAAAATCTGTATTTGAATGTCGTATCAATTTAATGCAGTATGAGGAGCTGGAGCGTCGTTTACTGTCTGAAATAGACGAACAGGAAGATAATCTGCGGCTATATCGCCTGACCGAACCGGCGGAGCTCCATGTAAAAGAGTATGGCAATTTTAAGGCAATTGATTTTGAAGGACCTCTCACTATCTGATAAACGCGAACCTGTAGCACCGGCTCAATACCGGCCAGTTCGCGCTACATCTAACTGTATGGTAACAAACAGGAAAATAGCTTCCTTTTTCTACTGTTCGTTACCGGCAGCCGAGAAAATCTTTACGTTCGCGCAAATTGCCCGAATTTTAAAGATGTATCAAGCAGTTATAGTTGTACT # Right flank : CAGTTATTCTCTGAGCCACCTGCTGTTTGCACGTACTTGAGTGATTGGGTTCCTGTCCAGCGCAGTGCTATTCTTCAATATATGATTTCCATCGTAAACCAGTTTTGATTCACCACGATCCGGCTTGGAAAGCGTTTTTGTTTCTATGACATAGATACCGGATGAGTGGATGACGACATGGTCGAGATTAAATCCTTTTCCCGGTATATCGTGAAAAATATGACTTCCTTGGGCTCTTAATCGTTCAAGAAATTGCCCTACCGCAAGTTCTCCGGCCAAACCTAGCTTGATACGCTTGACTTCTTTGCGCCCTTTATAAATTTTCCATAGAAGTGTTGCGATACAAGGTATAGCCATCACTGTAAATAAAACCGGGTTTGGTGATGTTTGTGTATACCACCGTATCCATTCCCACGCGGCTATTAATACAAAACATAATGCTGCTATGAAATACGGAACGATACCATCCAGGAAAATATTCTGAAGACGGTGATTCAGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGCCCGGTCACCAGACCGGGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-17.60,-17.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : NA //