Array 1 314271-311136 **** Predicted by CRISPRDetect 2.4 *** >NC_022538.1 Alteracholeplasma palmae J233, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 314270 36 100.0 29 .................................... AAGCATTGACTTACATATCTAAATATAGA 314205 36 100.0 30 .................................... TAAGTCCATCTGGTAAGTTCATGAGTTCTG 314139 36 97.2 30 ......................A............. AATGCTTTAACTTTTGATAACATTTTGTTT 314073 36 100.0 30 .................................... GAATTGAGATAGAAACGGAGTAAGACATGG 314007 36 100.0 29 .................................... TAGAATAGTGCAACGCTTTTTGATGAGAA 313942 36 100.0 30 .................................... TTAGGAGTGGTTATTCATCTGCCACTTCTT 313876 36 100.0 30 .................................... GATATGGTTGAACCAAACACATATTATTCA 313810 36 100.0 30 .................................... TTAGGAGTGGTTATTCATCTGCCACTTCTT 313744 36 100.0 30 .................................... GATATGGTTGAACCAAACACATATTATTCA 313678 36 100.0 30 .................................... TAAATATGGTTACATCGTTTGCTTTCATGT 313612 36 100.0 30 .................................... TATCATATTCATCACCTTGCCAAATGATTG 313546 36 100.0 30 .................................... TTAGGAGTGGTTATTCATCTGCCACTTCTT 313480 36 100.0 30 .................................... GATATGGTTGAACCAAACACATATTATTCA 313414 36 100.0 30 .................................... TAAATATGGTTACATCGTTTGCTTTCATGT 313348 36 100.0 30 .................................... TATCATATTCATCACCTTGCCAAATGATTG 313282 36 100.0 30 .................................... CATCAGTCAGAAAGTTGCCATTGTTGATTG 313216 36 100.0 30 .................................... TGTACGCATCAAACGGATTGTCATATGTAC 313150 36 100.0 30 .................................... ACAATAAAAGCGCGTTATCTAAGATTTGGT 313084 36 100.0 30 .................................... TGTACCCATCAAACGGATTGTCATATGTAC 313018 36 100.0 30 .................................... AACTCTTTGGGTTATGTTGGTAATGCTAAA 312952 36 100.0 30 .................................... CAATATATACATCAGCATATACTTTTCTAG 312886 36 100.0 30 .................................... AAATCTCAAATCATACTCATTGCAAAAGTC 312820 36 100.0 30 .................................... CATCTTTCCATGCTCCTAATGCGGTATCAT 312754 36 100.0 30 .................................... CTAACTCTAAAGCCTCAATCGCTCTTTGCA 312688 36 100.0 30 .................................... TATCATATTCATCACCTTGCCAAATGATTG 312622 36 100.0 30 .................................... CATCAGTCAGAAAGTTGCCATTGTTGATTG 312556 36 100.0 30 .................................... TGTACGCATCAAACGGATTGTCATATGTAC 312490 36 100.0 30 .................................... ACAATAAAAGCGCGTTATCTAAGATTTGGT 312424 36 100.0 30 .................................... TGTACCCATCAAACGGATTGTCATATGTAC 312358 36 100.0 30 .................................... AACTCTTTGGGTTATGTTGGTAATGCTAAA 312292 36 100.0 30 .................................... ATTAAATTATGGAATCTATTCACGTTATGG 312226 36 100.0 30 .................................... ACATAAACACTAAAGCATCTGCAGAAAAAC 312160 36 100.0 30 .................................... TTGGCTTGTTGTATACTTCAAGACCACTGA 312094 36 100.0 30 .................................... GTACCTAAGGTTACAATGTTTGATTTATCC 312028 36 100.0 30 .................................... GGAATTAATCCAATATACTCAAATACACCA 311962 36 100.0 30 .................................... TGGCATTTGCGAGTGCTGTAAGCTCTGCAT 311896 36 100.0 30 .................................... TGTAAATATTGTTAGCGTTTCAAACTTCTA 311830 36 100.0 30 .................................... AATAAAGTAGTATTAGCAGTCATTGCTGAT 311764 36 100.0 30 .................................... GAGTTGTTAGGTTAGATAGTGGGGAACTGT 311698 36 100.0 30 .................................... ATAGAGCATTATATCACCACCTTTCTTATG 311632 36 100.0 30 .................................... TAGACCCATCATCTTTATGCCATCCTAAAG 311566 36 100.0 30 .................................... ACAATACTTTAGTGTTAAACTCTTTAGGTT 311500 36 100.0 30 .................................... TTATTTCGTTATACTTCTTTATTGCTTCAT 311434 36 100.0 30 .................................... ATATCCACGCTACAGAAGTACTAGCAACAC 311368 36 100.0 30 .................................... TAATGATTAAAGTTGTGCCTACGATATTAG 311302 36 100.0 29 .................................... TTGATTTTACAACCATAGAACGCCTATTA 311237 36 100.0 30 .................................... TAAGATACGAGTGGGCTATGATGATAGATG 311171 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 48 36 99.9 30 GTTGTTAGATAGCAAAAATTACGAGGGTAACACAAC # Left flank : CTACTACTGCTGCTGTTTGTGATAATTGTCTAACTTTTTTCATTTTAACTCTCCCTTTTTAGTTTCTATTATAACCCATATTTTATATTTAGCAAGTCTTTATATAAGAAAAATAAAGCGCTTTCTTAAATTTTTGTTTTTTATAATTGTCCTTTCTGCTTACAATAAAACATAACATGAAATATGAAAAACTAAACTACTAATAATAGTTTAAAAGTTTATTGATTAAAGTCTGAATATAAAGAAAAAAGAAATCTATGACAAGTAATTAAACAAGTTTTTTTATAGACTTCTTCTTTTATTTTAATATATAGTATTATATTAAAAGTTGCAGAACCCACCATAAATAATACTTTTGGAGTAAGTTATGTTCTTTTGCAACCAAAGCAATTGTATCATTTTATTAGATAAAAAGAAATATATATTTTGATATCATTAAATTCTTTTATTCATTAGGAGGGTAACACAACTCAATTTAAAACAACTTGATTTAATTTTAA # Right flank : CTCAAAATAAATTATAACATTTATTTTGTTTTTTCTCTATGATTAGAGAATTTTACTTAAATTTAAATCATCTTGTCTGCCTTCACTGTTAAAATACAGTGACACATGTTCTCTTATATCTTGAATTGTACTATTTCTTTCAAGATTTAGAATAATATCATTATAAATGCTTACCTCATCAGAAAAATCAATAATTTGTTTGTTTAAAGATAAAAAATTATTTATGTCCACATTTTTTATATAACTATCATTAGACACTATTAAGATCATAAGATTTTTTTGCTTAACTTTTTCTATCGCTTCTTTTATTATTTGGGTTACTACAGGTATTTCGATGATACATATATATTCAAAATCTCGTATATTTTCAGTTATTTTAGTAATTAAATCAATCTGGAATAAAACTAAATCCTCATAACTTAAATCATATTCATTTGATATTAATTGGTCCTTATATAGACTTACTTCAACTTGTTTTAGAAGGCCTTTTAATGTTATTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGATAGCAAAAATTACGAGGGTAACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTGTTAGATAGCAAAAATTACGAGGGTAACACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.30,-1.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //