Array 1 729240-726872 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGICD010000001.1 Wohlfahrtiimonas chitiniclastica strain DSM 110179 NODE_1_length_729287_cov_279.516108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 729239 28 100.0 32 ............................ ACTAGCCAACTATCACTTGTTCAAAACCTCTC 729179 28 100.0 32 ............................ ACCCGTAAAGAGTTTTAAATATATAAATATCA 729119 28 100.0 32 ............................ AAGTTATGTTTGCCAAATCCCGATGCATCTTA 729059 28 100.0 32 ............................ AATTAGTGAAATGACTTTTAAATCTGCCATGT 728999 28 100.0 32 ............................ CTATAAAGTCTTTGGTGTTACCTAAGGGAGAA 728939 28 100.0 32 ............................ ATTGTTTAGCTCTTCGAGCATGGTTTTAATCC 728879 28 100.0 32 ............................ ACCGGCAATTTTGTCGACGTCGAGGAGAGAAA 728819 28 100.0 32 ............................ TACTTCTCTTATTCAGTTGCTAAGACTTGCTG 728759 28 100.0 32 ............................ GCGGATATAAACTGTATTGCGATCAATACTAA 728699 28 100.0 32 ............................ GCAATGGCGTCATGTGCTTTATTCATCACCTT 728639 28 100.0 32 ............................ TAACTTCTTGAAGCTTTGCTGTTGATTTCTCA 728579 28 100.0 32 ............................ AAGCACGGCAGCCAACCTGGTGAGCAAGAACC 728519 28 100.0 32 ............................ ATCTTTTTCCTCAACTATTTTCCAATGTTCTA 728459 28 100.0 32 ............................ TTTTGGATGATGCTGTAATTCAATAAACGATA 728399 28 100.0 32 ............................ CAAATGAAACTATTGGAAAAACTGAACCTGAA 728339 28 100.0 32 ............................ CAAAATTTCAAAACCTCTCAAAACACGCCAAA 728279 28 100.0 32 ............................ GATTGCCTTACAGCGTTGTGCAACTCTAACGA 728219 28 100.0 32 ............................ ATCCCTGCTTCATCTAAGACGATTACAGTATC 728159 28 100.0 32 ............................ ATTATCACAAGACTTACCAAACCATTCTTTAG 728099 28 100.0 32 ............................ ACAAACGTCAATTTATCTTGCTTGCTCTGCGC 728039 28 100.0 32 ............................ GCGTGAACCAAAGCCCTTTGTTTGCACTGTCT 727979 28 100.0 32 ............................ AAACAAAAGAGATGTCTTAATTAACCCAAGCA 727919 28 100.0 32 ............................ AGCGGGATCTAATGAATATATTATTTACAACA 727859 28 100.0 32 ............................ ATCATGTCGTTTCTAATCACTTTTAAACGCTC 727799 28 100.0 32 ............................ CGAATGCAAGAGAAGTACAGCTCAAAATGCGT 727739 28 96.4 32 ......A..................... AATATCGCTGCGTTGTGGTTATAATAGTATAA 727679 28 100.0 32 ............................ GTCACTTGGTAGGCGTACTAAGCTGATCCCCA 727619 28 100.0 32 ............................ ATGCTGATTCCGCCTGTGACCTGCAATTCACC 727559 28 100.0 32 ............................ ACTCTCGAAAGAATGGCGGCTTATCTGCTTAT 727499 28 100.0 32 ............................ AAGCCGAATGCTTAAGCATAGAGCAACGGCGC 727439 28 100.0 32 ............................ AATCATACCTAAATTCTCGCCAAAAATGTTAA 727379 28 100.0 32 ............................ ACATTGGCATGCGCCGTTTTCATCTAAAGAAA 727319 28 100.0 32 ............................ GATTAATCCGAACACCGGGAAGCCATACTTTA 727259 28 100.0 32 ............................ GCTACAGGCTCTACATTGACCGATTTATCATC 727199 28 100.0 32 ............................ ATAAATCAGACACCTTTGCGGCGCCTTTGAAT 727139 28 100.0 32 ............................ GTGCAATCTGGACAACGCTACCGCGGGTTGCT 727079 28 100.0 32 ............................ AAAAAAGGCTATTATTATTATGTCTGTGCTCA 727019 28 100.0 32 ............................ AAGCTGCCCCAGCGCATCGGCATTTCGGATTC 726959 28 100.0 32 ............................ ACTGTGGCCACAATACTTGAGGATTGATCCCA 726899 28 96.4 0 .............C.............. | ========== ====== ====== ====== ============================ ================================ ================== 40 28 99.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATAGGCAGCTTAGAAAACCCGTAAAGAGTTTTAAATATATAAATATC # Right flank : AGTGGTTCCATGGTGAATTTGGAAAGTTTGCGGTTCACTGACTAAAAATTGAGAGTTTATAAATGACATTACTAAAAGTGTTGGCACGACCTTTGTTTGTGTTGAAAATTCATTCATCACATCCTTGCCAGTGTTTGCAGATGCCAATAGCAATACCGGTGGCAGCACACAATGGAATAATTCAGTGAACATTAAAATGTCCATCGATATGTATGACAATGGCGTGATGGACATTGGTATCAATGCAGAAATTGAAAATAAAAATGAAATCTCAGACAGATTTAAACATTATTGCGGCTATGTGCTTGGGCGTTTATTCAGTGGTCAGTTGTATAAACGCGGCTGGGTGAATAATGAGCATTTTGGTACAAGCAGCCATTAAGACTGTTGCATTTGTAGCCATTGATCAAGCGCATTGGCAAATTGTTGACGCTCTTTTTGTGATAATGGTGGTGGACCTGAAGTTTGTACACCGCTTGAGCGCAATTCATCCATAAAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2057-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGICD010000005.1 Wohlfahrtiimonas chitiniclastica strain DSM 110179 NODE_5_length_169567_cov_299.847537, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2056 28 100.0 32 ............................ ACTATAAGCATACGTTTATACCACCAATGGAT 1996 28 100.0 32 ............................ TCAAAACACTACATGAGCGCTCAGGCAGTACA 1936 28 100.0 32 ............................ TCTCAATCTATCCAAGCTATCTTTAGCTAACT 1876 28 100.0 32 ............................ AAGCTAGTATCTCAACACTTAGAAAAGGAACT 1816 28 100.0 32 ............................ AAGAATCAGTTGCGTTTACTGCGGGATATAAC 1756 28 100.0 32 ............................ TGAGTTACTTAAAGCATCAGAATCACAGGCTA 1696 28 100.0 32 ............................ TTTTGAAACAATAAAATACCACTTATTAAAAG 1636 28 100.0 32 ............................ ACGCAAGCGAAAGGCTTCTTGTCGTTGTCCGT 1576 28 100.0 32 ............................ ACTAACCAACTATCACTTTTGTGCAGTCAAAA 1516 28 100.0 32 ............................ GATAACGGGTTTTGATTGATATGGATTGCTGA 1456 28 100.0 32 ............................ ATTAGCGTTCTCTTTGACTTTCTCATATTCTT 1396 28 100.0 32 ............................ GCTGAGAGAATGAAAAGCAGAAGGGCTCATAT 1336 28 100.0 32 ............................ TTTAATCAGATTAGCGAGTCATCATTTTCAAC 1276 28 100.0 32 ............................ TGTAGAAAATGATGATTGTCCAATCTGTTCAA 1216 28 100.0 32 ............................ CGTAAAATATGGATTTACTTCTTATAAATCAT 1156 28 100.0 32 ............................ TTGCAAGCTCACAGTAGTTCACTCGATAGAGG 1096 28 100.0 32 ............................ GCAAACCTAGCTATTTAGTGGTCACTGTGGCG 1036 28 100.0 32 ............................ ATCCTCATTTTCATTGCATTATCCAAGTGAAT 976 28 100.0 32 ............................ ATATCTATATAAATCAATACTATACATAACAA 916 28 96.4 32 .............T.............. AATACAAAAATATTTTTGTATTGATTTGGTTT 856 28 96.4 32 .............T.............. TTGCCAAATACAGTGGTAAAAGATAATAAGTT 796 28 96.4 32 .............T.............. TACTAGAAAGTACTCAATTTAAAGAAGCTACG 736 28 96.4 32 .............T.............. CCCATTAAATCTAACTCGATAACATCACGTCT 676 28 96.4 32 .............T.............. TTGAATGGTTGCAGTGTCGCCTACCTTGTAGC 616 28 96.4 32 .............T.............. TCATTAATTAGGCGAAAAAAGCCTACTGTAGT 556 28 96.4 32 .............T.............. ATCAAGTATAATTATTTAATTTTTTTAAACAC 496 28 96.4 33 .............T.............. ATCGCTACCTAAAGCTATAAATTCAGCTTCCGT 435 28 96.4 32 .............T.............. ACTATAAGCATACGTTTATACCACCAATGGAT 375 28 96.4 32 .............T.............. AACTGGTCAATGAGTGGTCTGATGCTACTCAT 315 28 96.4 32 .............T.............. TTTAATCATTACTTTATCTGATTCGATTGTGA 255 28 96.4 32 .............T.............. TCCTTTCTACCATGTGTAAGTGTGATGCGTTT 195 28 96.4 32 .............T.............. TATTGGAGAATGATCCAAAATTATTCGAATAT 135 28 96.4 32 .............T.............. ATTCCAAAATCTCTTGTTGAGAGATTGACTTC 75 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 34 28 98.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTGAATGCAGGTTCGTGGCTGTCACGCTTGACGGATTATGTGCACATTTCTTCCATTAAGCCGGTGCCTAATCGTGTGACGCATTATGCGATTTATCAGCGTAAACAGGTCAAAAGCAGTGTTGAGCGTTTAGCGCGCCGTTATGCTAAGCGTAAGCATGTGACATTTGAGGATGCCATGGCACATTTGAATGGCAAAACGCCAGAATATTGTGATTTGCCTTATGTTCAGATGAAAAGTGAAAGCACGGATCAACGTTTTCATTTATTGATCCATAAAGTAAAAGTGACAGCACCCACGGAGGCTGCAAACTTTACAACGTATGGTTTGAGTCATCATGAACAATTGTCTGCTGTCCCTGAATTTTAACCAATGTTTTTTGCTCTTTAAAAATTTGGATAAAAATCAGTAGCTTATAAAATAAGGAAAAATCATTGGTCTTTTCAGGTAAACTACCTGCGATCAGTGATTTTTCCTATCTTTTGTGCCGAAATTTTACT # Right flank : AACCCGTAAAGAGTTTTAAATATATAAATATCAGTTCACTGCCGCATA # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 131487-130897 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGICD010000005.1 Wohlfahrtiimonas chitiniclastica strain DSM 110179 NODE_5_length_169567_cov_299.847537, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================================= ================== 131486 27 75.0 173 .......ATG...A.C...-....T... GGTTGCGCCGTTGCAGGCGCGATTGAGCATGCGGACACTTAAGACCTTTATGGTTTGATCTTTAAAAATTTGGATAAATATCAGTAAATTACATGTCATTGGAAAAGGATTGGTTTTATGGCTATCAACTGCCGAAATCATGATGTTTCCAATGGCATTGTTATATTTTTAAA T [131483] 131285 28 100.0 32 ............................ TTTATCTTTGGCTAGATCATCAGCTTGTTCAT 131225 28 100.0 32 ............................ AATACGATTGATTGGGTAGATGAACAAAATCA 131165 28 100.0 32 ............................ TCCTTGGAATGTCTGGTAAAGAAACTGCCCGC 131105 28 100.0 33 ............................ CCGTTGAAGACATCCTGAAGCCGACTTATAACT 131044 28 100.0 32 ............................ TAATAACGTAGGTGGTGCTTTCGATATGTCGC 130984 28 100.0 32 ............................ TCAAATGCCACATCCCAGATGTTCTTGCCGTC 130924 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================================================================================================================================================= ================== 8 28 96.9 52 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ACAAAAAATTTCTGTGCGTATCGTCAATGAAGTTAAGCACGTGAACCGTATTGTGTATGACATCACAAGTAAGCCACCTGCAACGGTGGAGTGGGAATAATTTAGTTTCCACGCATTGACATGAACATAAAAAATGGCCTAAATAAATATTAGGCCATTTTTTTTAATGATTTTTAGGAGAGTTGAATGAAAAAATTATGGATGATTACAACCATTATGGCAGTTTTAACAGGTTGTGCTTCTGTTGAGCAAGATACCGTGGTGCATGATTTTACTGCATATGGCAAGCTCAATGAGCCTTGGCGCATCGTGGTCAAGCATGATGATCAGTTAGAGATTGAAGGGGTAATGGTTCGCGAGGGCACATTGAAAGTGACGCGATCGGCATATGCAAAAGGTGTTGAATTCTCAGGGGATTATGATGGGCAGTCATTGACATTAAACATCCGCTCATTGAAGTGTAAAGACAGCAATGGCGATGAAACAGATTTCACTGCCAC # Right flank : GACCGGAGCTGTGCCATCGTAACGGGATTATGAACAGACAGTAAAATTAATGCTTTAAGTTACTCGCCATAATACGCCCAAAGCAGGACAGGTTTTTTCTTGGTTTGTAAAAGCTTGTCCACTTTGCGCATTGTGTCATCATCCACAACCGGGCAGCCTTGACTGAAACCTAAAGGCAAATAGTTTGGGAAAGTTTCTTCATTCGGAATCATCTTAAAAGAGTGGAGCACAATGTAACGCTTAAACGCATTGCTGTTACTCGCCTCTAGTCCATGGAGTTTGTAGTGAATGCCAATTCCCCATTTGCTCGGCGCGCGAATGCCCACACGGTATTTACCGAGAGAAGATGCATAGCTATTCGGTTGATTGCTAAAGACAATGTTTTGATTATCACTCTCAAAGCCCACATTGCCATAACCATGGGCGACGACGCTTTTGATCTGCGATGATTGTGTTTTAAAATTCCACACAAAAAAGCGATCTTTACCAGAATGGCGCGC # Questionable array : NO Score: 4.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-2.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //