Array 1 108014-106293 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVC01000002.1 Salmonella enterica strain BCW_3050 NODE_2_length_345883_cov_2.5646, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108013 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107952 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107891 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107830 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 107769 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 107708 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107646 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107585 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107524 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107463 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107402 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107341 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107280 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107219 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107158 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107097 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107036 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106974 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106871 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106810 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106749 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106688 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106627 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106566 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106505 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106444 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106383 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106322 29 96.6 0 A............................ | A [106295] ========== ====== ====== ====== ============================= ========================================================================== ================== 28 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125944-124146 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVC01000002.1 Salmonella enterica strain BCW_3050 NODE_2_length_345883_cov_2.5646, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125943 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125882 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125821 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 125760 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 125699 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125638 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 125577 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 125516 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125455 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125394 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125333 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125272 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125211 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125150 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125089 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125028 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124967 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124906 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124845 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124784 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124723 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124661 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124600 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124539 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124478 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124417 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124356 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124295 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124234 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124173 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //