Array 1 2795885-2795080 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044198.1 Salmonella enterica subsp. enterica serovar Typhimurium strain AR-0408 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 2795884 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 2795823 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 2795762 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 2795701 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 2795640 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 2795578 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 2795475 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2795414 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2795353 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2795292 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2795231 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2795170 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2795109 29 96.6 0 A............................ | A [2795082] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2814487-2812017 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044198.1 Salmonella enterica subsp. enterica serovar Typhimurium strain AR-0408 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2814486 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 2814425 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 2814364 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 2814303 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 2814242 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 2814181 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 2814120 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 2814059 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 2813998 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 2813937 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 2813876 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 2813815 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 2813754 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 2813693 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 2813632 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 2813571 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 2813510 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 2813449 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 2813388 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 2813327 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 2813266 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 2813205 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 2813144 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 2813083 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 2813022 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 2812960 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 2812899 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 2812838 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 2812777 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 2812716 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 2812655 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 2812594 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 2812532 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 2812471 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 2812410 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 2812349 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 2812288 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 2812227 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 2812166 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 2812105 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 2812044 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 41 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //