Array 1 299828-297939 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAHB01000002.1 Lacticaseibacillus rhamnosus strain DS12_11 DS12_11_2_length_340950_cov_41.195383, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 299827 36 100.0 31 .................................... TTTAGAATACGATTATAAGACAGTAGTTTGG 299760 36 100.0 30 .................................... AGTAAGGTAGCCAAATACAACCATAAGGGT 299694 36 100.0 30 .................................... AACTATCTAACACGCTATACACAGAATGGC 299628 36 100.0 30 .................................... TTTAATATGCAGGCGGCGACTGATTTATTT 299562 36 100.0 30 .................................... TTTAATATGCAGGCGGCGACTGATTTATTT 299496 36 100.0 30 .................................... TGATTTGCGAGATGTCGCGATAAGAAGTCA 299430 36 100.0 30 .................................... GACAACAGACTCCGTCAACATCAGTCTTAA 299364 36 100.0 30 .................................... ATAAACATCGTATGCGAATCGTAACAACGT 299298 36 100.0 30 .................................... AGTTGATTGAGGCGCGGATGTACATTCCTG 299232 36 100.0 30 .................................... CCGTTTTGGTTGCAAAACGAACCGATTACG 299166 36 100.0 30 .................................... AAGGTGTACTGCTTAGCTGACTCCCACGTG 299100 36 100.0 30 .................................... CTCGTGACTTGTCGTGATATGCATACGCGC 299034 36 100.0 30 .................................... GAAAGTTCTTTAAGTTGACCACTCATTTCA 298968 36 100.0 32 .................................... TCAGGGTGCCGGCTACATATACACGACTTTCG 298900 36 100.0 30 .................................... TCTGGAAGCCCGCAATAGTCAATTGAAGCT 298834 36 100.0 30 .................................... AAATGGTTTGAATACCCTTATCCCGCCATT 298768 36 100.0 30 .................................... TAATGACGCTTAACGCTCTCCGGTTGGTCT 298702 36 100.0 30 .................................... AGTCGTGCAAATCCACGTGCGCGCGTTGCA 298636 36 100.0 30 .................................... TTTTATGATGGGCTTGTATTTTCCCAAATA 298570 36 100.0 30 .................................... GGCAATTTTAAAGCCGTGACCGATGCCACG 298504 36 100.0 30 .................................... ATGACGCAGTTGGCGAAACCTTTGCACGTT 298438 36 100.0 30 .................................... TCGCTGACATTGACCATCAACGGCGCCGAG 298372 36 100.0 30 .................................... GCGTGTTAGTCGCTTGTGTGGCTTACCGTT 298306 36 100.0 30 .................................... GCGGCATCTTCAAAATCAAAACGACGCGCA 298240 36 100.0 30 .................................... GTTGACGCGTTGCGCTGTCGCTGGCCGTTG 298174 36 100.0 30 .................................... AAGCAACATATCAATCAAGCCGAAAAAAAG 298108 36 100.0 30 .................................... TGATGACGAAGTGAGTTTGCCCACCGCTTG 298042 36 100.0 30 .................................... ACTCGGGTATTGACAAAGATCGACGCGGCA 297976 36 86.1 0 .......................AA.C....G...G | T,C [297942,297948] ========== ====== ====== ====== ==================================== ================================ ================== 29 36 99.5 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : GAGCTGGATTTGGACAAGTTATTTCAACGCTTGATCATCAAAAAGGTAAGCCAATTGATAGAGGATCAGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAGGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTCAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTGCCAACATCAGTCATTATTTAGATGTTGAAAGTCTGAGCAAGCTGTTAGATCAGGTTAAGAACACATCGTTGGAATTACTTCTCATTGAATTTTCAGATGTCGAACGCAGAAAGTTTTTTGAGAAGTGCCAGTATATCTATATTGACAGAGATTTTATGGATAGCCGAGAACTGATTGATTAAGAGGCTGTGTGAAAACACCG # Right flank : ACTCACCTCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCGCCAGTATTTTACACTGATCTCAAAGAAATCCGTCACATGTACCAACAGGCGTTCAAATCACTTTACGGCAAATATCAAGATCGGGAAACCAATCCCTACTGTGAATCGTTGAAAAGCTTACAGAAAAAGTTCAAACGGCCTAACAATGCCTTCTTCTTTATAACCGTTGAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCTCAAAAATTCGGCAGCCCGTATTTCACCATTTTTAATCTTGCCGTTTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCCAAGTTGGTACATTTGTATCGCAAAGTCGGTTTTCAGCAGCTACCAGATCGGGAAACGACGATTAATGAGCATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //