Array 1 68964-70499 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNSV010000006.1 Lactobacillus delbrueckii subsp. bulgaricus strain CIRM BIA 657 CIRM_BIA657-i1-1_scf6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================================================================================ ================== 68964 36 100.0 30 .................................... TAAAAGTTGGTACTGCTTGGTCGAACACGT 69030 36 100.0 30 .................................... ACCGTGTCACTGTGAGTCCAGCCGGTTCTT 69096 36 100.0 30 .................................... TCGTGACGGACAAGGCGGACGAGCTAAAGA 69162 36 100.0 30 .................................... CCTCTGCTTGTTTAAGCTTGCTTATCGTTG 69228 36 100.0 30 .................................... GGCGCCAGCAGAGCGTTATCGCGTTGCTCA 69294 36 100.0 30 .................................... ATTGCTTGGTTAAGCTAGCAGTTGCGTTAT 69360 36 100.0 30 .................................... CAATTAACTTTATTTCCTTTACGCTTTATA 69426 36 100.0 30 .................................... TTTCTCGGGGATTATTGCTTTGGTTAAGGA 69492 36 100.0 30 .................................... GCATTCTTGATCTTAGACATATCGTTAATA 69558 36 100.0 30 .................................... ACCTAACTGGGTCTACCAACAAGTACAGTG 69624 36 100.0 30 .................................... CTTAACACGGTTAGTATTCTGCACCACACA 69690 36 100.0 30 .................................... ATCCCTGCCTTAGTCTTGGGCGGCTGGATT 69756 36 100.0 30 .................................... CTCGGATCAGTGATCACATTGCTGTTTTTG 69822 36 100.0 30 .................................... AACTTTGAAATCAAATGACCAGCCTTCTTG 69888 36 100.0 30 .................................... CCATAGTTAAAATCTCCTCTTTAAATTAAG 69954 36 100.0 30 .................................... GCAAGGCGGCCGACTCACTAGCCAGTGCTG 70020 36 100.0 30 .................................... CAGCCCAGGCACGGGCTCTCTTGGCTTCTG 70086 36 100.0 30 .................................... CATTGTTACCACGCTTTCTATAAATCCTTC 70152 36 100.0 30 .................................... AAAGCGTCACACAAAGTCAAAACAGGGCTT 70218 36 100.0 30 .................................... GATCTTGTCAGAGTGGTTGAGCATGTCGTC 70284 36 97.2 144 ...................................G CTGCTTGGATGCGTGGATTGAAATAGTTTTATAGGGGTGCTTATTCAATGTTGTCAATTTTCCCGATGTATGTTGGGGGTGGCCATCATAATGGCCTAATACTAAGACGACAATTCTACTCATTCCACGTAGGTGGGGGTGATC 70464 36 75.0 0 ..........A..........C...G..GAC..AAG | ========== ====== ====== ====== ==================================== ================================================================================================================================================ ================== 22 36 98.7 35 GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Left flank : CAGTGAATCTTTACTTCAAAAGTACATGACCAAATTAACTAGTTATGTAGTTGATGAGCTAAGCGCAGATGGCAGAAACAGAATCATTACCTTCTATCGCGATTTACTAAATGCTGTTCAAGACGAGTTGCTTATGGAAGATTTGCCGCTTGAAATAAGTTTTGACACAGACTTGAAGAAACTCTTCAAATTTGGTGGTCTACACTTTAACAAGACACTCACTCACGATCCATATGGTATAATCGAGACAGTACTTAGGATACATGACAGGTTAGATCTTAAGTCTACTGTTGTTTTTAGTAATGTAGCTCATTACTTAGCTGTAGAACAGTTTAACGAAATATCTAAGCTGTGCTTAGAGCTAAAAAAGTCTATTATTTTTATCGAGTTTTGTAGCCATAAGGATCAGGTTGTATATGGTGATGCAAAATTCAGTTATATCGATGAAGACCTTGTTGATTGGTACTAGCCTTAAATTAAAGCTGTGTTAAAAAATAACG # Right flank : GTGCTTTTCATGATTGAGAAGCACTTTTTTCTGTTGAACACAACAACTTAAAAAAACGTTAAATCAAACGCTTCACCAAGTAAGCAGGAAAAGATTATAGTAAAATACACTGGTTATAAAAAAGCTGAGCCAAGCTCAGCATCCCCAAAACAAAACTTAGTTAAGGAGAATAAACACATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCTGCTATCGACCTGGGCCAAATCGCCCTGCGCGGCGCATTAAAAGAAGCCGGCCTTGACGCCGAAGCCCTGGATGCCCTCTTCATGGGCAATGTCCTGGCTGCCGGCTTAGGCCAAAACATGGCCCGGCAAATTGCTTTAAACGCCGGGATGCGGCAGGACTCAGTCGCCGTGTCCATCAACGAAGTCTGTGGCTCCAGCCTCAAGGCTGCCCGGCTGGCTGAAGCCCAAATGTTAATCGGTGACCTGGG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.47, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //