Array 1 3190-2046 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEHQ01000027.1 Lactobacillus iners LactinV 01V1-a contig00103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================= ================== 3189 29 100.0 32 ............................. GGCACTGGCTAGGACAAAAAGTCTGACAAAAA 3128 29 100.0 32 ............................. GGCACTGGCTAGGACAAAAAGTCTGACAAAAA 3067 29 100.0 32 ............................. AGATGTGTGTGACCACATCTATTTAACCAAGG 3006 29 96.6 32 ............................C CGATAGGTTCAGACATAGTGAAGAGAGTATGA 2945 29 96.6 32 ............................C ACGGAAACTGCCAAAGAAGTGGTGAGCTGGTG 2884 29 100.0 32 ............................. TACGGTAAAGATTGGATTAAGAAAAATGTTAA 2823 29 96.6 32 ............................C CTGATTTTCCAAGTTAATAATTCATTATGGCA 2762 29 96.6 32 ............................C TGTGGTCTTTTGTAGATCAAGAGTTAGCTCTG 2701 29 96.6 32 ............................C TGCAACAACTGTACCAATTTAAACAGTTTTCA 2640 29 100.0 32 ............................. CTAGAAGCTTTTATGGAAAAGCACAAGGCAGG 2579 29 100.0 32 ............................. ATAGCTTGCTTGCACTGCGCCTTTAGCGAGTG 2518 29 96.6 31 ............................C GTATGACGAAAACCATGCACTGTTATTTCTT 2458 29 100.0 32 ............................. TGCACACATTACCGCTTGAATTATGCCTTTTA 2397 29 100.0 32 ............................. CCTCCTGTTAAAAACGCCGTTACTACTGAAAC 2336 29 96.6 32 ............................C TGATCTTGAAGTACATAAATTTTATTCAGTAA 2275 29 100.0 32 ............................. AATGTCCGCCCTAATTTTTACTCTAGCGAGCT 2214 29 82.8 109 ....................T.A...TTA AAAACACTTCCAAATTTTTATTTACAAAATTTAGGCAATATATCATAATATGTTTAACTTAGGAGTAAGCATGTTATTTTTAGTTTTGGCTTGCTTTTTTCTTAATATT C [2189] 2075 29 69.0 0 ...C..T...T......T.T...A..AAA | A [2051] ========== ====== ====== ====== ============================= ============================================================================================================= ================== 18 29 96.0 37 GTATTTCCCGCACATGCGGGGGTGATCCT # Left flank : GTGCTATAAAAATTGCCAAAAATATTGAGGAATATTCATGTATTGTTAAACAGAATATTACACTACCTAATGCAATTAAGATTTTAACTGGAATAAGCGATGCAGAACTAAAAAATGGTAAAGATGAGTCTGTAGCAATTAAAGAGTTGTGCACGTTTATTGGAGATAAAGCATTAGTTGGCTATAATGTTAATTTTGATATCAGGTTCATCAATGAAGCATTAAAACGTAACGGACAATCTCAATTAACGAACAAAGTATACGATGTCATGAAATATGTAAAACGTGATAAGATGTTTTTAAAGAACTATAAGTTGGATACAGTATTAAGTGAATACGGAATAAATATTAAAGTACCACATAGAGCGATTGAAGATGTAAAAATAATACAACTTCTTATTAGCAAATTAGATGGATTAACTAATAAATTGAAAATTTAAAAGTGAATGAAAAAATGGTATCCTTAGGTTGCAGGTGGCGTCATAGAGGGATCTTTTAGT # Right flank : GTTATTTTTTATAATTAAAAGAAGAAAGGTAACATATATAATGGGAAGAGAGCTTATGGGGTTGGCTAGTTGTGATGATGATCGCAAAGCGATTATCAATTTTACTATAGTAGCTGCCAAATATTTTAACGATCAAGTTACAGTTGAAAAAATTAATGATAGTTTGAAGGAACATAGTCAAGCCCCTTTGACAGAAGAAGAGAAAAAATTTTATGGGGTAAAATAATTTTTGACAAGTACTCTCTATTTTTATCGAGTATTGCTATCATGAAAAATAAAAGCACTAATTTTAATATGTATGCGTGTTACAGAATACATATCTAAATTAGTGCTATTTTTTGTGATTTAAAATTTTTTATTTAGAATTTTTAGTTAATTTATTTTTGATAGATAATATGATGATAGGCAAAATTGAAATAGCAATGATAGCAATGATCAGCAAGGAAAAATGATGCTGTACAGCAGGAATATTACCGAATAAAAAGCCACAGATTGAAAAT # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.37, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //