Array 1 45276-44888 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRMG01000188.1 Acinetobacter baumannii strain ORABAshR GCID_ACINM_00016_NODE_32.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 45275 29 96.6 30 ............................T TAAAAATGCACATCAATACGATATTCTGAT 45216 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 45156 29 100.0 31 ............................. TCATCAATAAGTTGGCCTTGATTTAAATAGT 45096 29 100.0 31 ............................. GATACAAACGAGTTCGCATCTCGACCAGAAG 45036 29 100.0 31 ............................. TTATCCAGATAAAACCATATCTACAAAGTGG 44976 29 96.6 31 ............................T CAACCTGAACACAGACATACATGTTCTATTG 44916 29 82.8 0 ...GC...................AT..T | ========== ====== ====== ====== ============================= =============================== ================== 7 29 96.6 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ATTTTATTATCATTTTTTTTATATTTCTAAATCTTCTATGCGATGAACAACATAATCACCATTCTACTGACCATGAACAATAATTTCTAAATCATCTATGCGAAGAACAACATCACTGGTTTACTGGTGAAATTCGTGATTATTTTCTAAATCATCTATGCGATGAACAACGTGAACTGTTTTCATCAGGTGTTTTTTATTTCTTTCTAAATCATCTATGCGATGAACAACCCAGTATCGCAATTTAATTATCAAATCGCTTATTTCTAAATCATCTATGCGATGAACAACGCGGGTTCGCCAATGACAAGACCGCTCCGGCATTTCTAAATCATCTATGCGATGAACAACGCAGTCCCTCGAACATGTGGGGTTTTCTCTGTTTTCTAAATCATCTATGCGATGAACAACGATTTCCGCATACTTCGCGATCTTATTGGCTCTTTCTAAATCATCTATGCGATGAAATAAAAATAGTGTGTTAATTATTTATGATGAAA # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 45304-45752 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRMG01000188.1 Acinetobacter baumannii strain ORABAshR GCID_ACINM_00016_NODE_32.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 45304 28 92.9 32 T..T........................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC A [45305] 45365 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 45425 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 45485 28 100.0 32 ............................ TAAGCGATTTGATAATTAAATTGCGATACTGG 45545 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 45605 28 100.0 32 ............................ ATAATCACGAATTTCACCAGTAAACCAGTGAT 45665 28 96.4 32 .......T.................... TTATTGTTCATGGTCAGTAGAATGGTGATTAT 45725 28 96.4 0 .................A.......... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.2 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : CGGGTTCAACTCCCGCCATCTCCACCAAGATTCGTGAAAAGCCCTGAAACGAAAGTTTCGGGGTTTTCTCTTTTTAAGATTCAAATTATTAAATCATCTATGCGATGAGCAACCAATAGAACATGTATGTCTGTGTTCAGGTTGATTTCTAAATCATCTATGCGATGAAGAACCCACTTTGTAGATATGGTTTTATCTGGATAATTTTCTAAATCATCTATGCGATGAAGAACCTTCTGGTCGAGATGCGAACTCGTTTGTATCTTTTCTAAATCATCTATGCGATGAAGAACACTATTTAAATCAAGGCCAACTTATTGATGATTTTCTAAATCATCTATGCGATGAAGAACGTTGTAATGGGTTTAGATCATTATAATAGTATTTTCTAAATCATCTATGCGATGAAGAACATCAGAATATCGTATTGATGTGCATTTTTAATTTCTAAATCATCTATGCGATGAAGAACTTTCATCATAAATAATTAACACACTATT # Right flank : TATAAAAAAAATGATAATAAAATAAAAATTTGGTTGTTCATCGATTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 43-545 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRMG01000021.1 Acinetobacter baumannii strain ORABAshR GCID_ACINM_00016_NODE_12.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 43 28 100.0 28 ............................ TCTGTTTATTTTTTATTGTTTGGGATAT 102 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 162 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 222 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 282 28 96.4 33 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTATG 342 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 397 28 92.9 31 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGA 457 28 89.3 34 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTTG 519 27 82.1 0 T....-......C...........A..G | ========== ====== ====== ====== ============================ ================================== ================== 9 28 93.3 31 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TATTTAGATAATTTTTATTTTTTTTTTTTATTTTTGTATTAAG # Right flank : GAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGCA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 498-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRMG01000236.1 Acinetobacter baumannii strain ORABAshR GCID_ACINM_00016_NODE_76.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 497 28 100.0 32 ............................ AATCCTATAAAATTTAAAAGTGTTGATTTTAT 437 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 377 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 317 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGATTT 257 28 100.0 32 ............................ CACTAATCTATTTGATTTAATTAAGTTTCAAC 197 28 100.0 32 ............................ TAACACAGTGATTTGGTTGCCATGTGTATTTA 137 28 100.0 32 ............................ ATCTTGATGACGAGGTCTTTAGCTTATTGAGA 77 28 96.4 0 ...C........................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.5 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : ATTAAGCTGAACACAGACATACATGTTCTATTGGTTGCTCATCGCATAGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5588-6636 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRMG01000236.1 Acinetobacter baumannii strain ORABAshR GCID_ACINM_00016_NODE_76.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 5588 28 100.0 31 ............................ ATACAGCAAGATTTATGTTATCACATCGTAA 5647 28 100.0 31 ............................ TGGAACGACAAATACGAAAAGATGACAAAGA 5706 28 100.0 32 ............................ TCAACTTAAATGGATGCTCCCCGCGGTGAATT 5766 28 100.0 31 ............................ TTGATTGCTAGAATGTTTTTTATCAGATCAT 5825 28 100.0 32 ............................ GAGATTAATGCGGTATATGGCGACGAGGATTT 5885 28 100.0 36 ............................ AAACACAACTAAGCATTTATTCAAAAATTCCTCAAA 5949 28 100.0 32 ............................ ATAGCGCCCTGCTCTATGTTGTCACTTCCGAA 6009 28 100.0 32 ............................ TCCAAGTGAATCGGCTCCTAATGCAAATGACC 6069 28 100.0 32 ............................ TGAAAACCAATATGCTGCCTAATTGCCATAAG 6129 28 96.4 32 ....A....................... GATCTGCGTCCATTTGTACTTGCTGCGGGTGC 6189 28 89.3 32 ....T.......AT.............. ATATACAGCACCGCTTAGTGCGACGCGGTCAT 6249 28 89.3 32 ....T.......AT.............. GCCCACAGGTTGAGCATCAACGGCCATCGAGA 6309 28 89.3 32 ....T.......AT.............. ATCATAGAGCTCACTTTGTCGTTGAGCCTGCA 6369 28 85.7 32 ....T.......AT.T............ AGAAGGCCCGTAATTTAACTGTAAGCCGTGGT 6429 28 89.3 32 ....T.......AT.............. TGTTTCAAAAGCTACACCATCAAAACCATTGC 6489 28 89.3 32 ....T.......AT.............. TATTTAAGTAATAAGTTTAATAACGACCTAGT 6549 28 89.3 32 ....T.......AT.............. AACACGTACTAAATATCGCTGTTAGCTTTCAA 6609 28 89.3 0 ....T.......AT.............. | ========== ====== ====== ====== ============================ ==================================== ================== 18 28 94.8 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TAAAGAATAATATGATAAATAAACATATAAACGTTCTTCTTAGCA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : GTTCTTCATCGCATAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //