Array 1 8903-9131 **** Predicted by CRISPRDetect 2.4 *** >NZ_JENX01000090.1 Clostridium haemolyticum NCTC 9693 Contig90, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 8903 31 100.0 35 ............................... AATTGTCCAGACCCTTTTCGGCATCATATCTCAAA 8969 31 100.0 35 ............................... TTAGAAAACAGTTTTGAAAGTTTTATTATAGAATA 9035 31 96.8 35 ..............................T TGCATATAAATCTATCCCACTCGTTAGTTGGTTGC 9101 31 93.5 0 ...............G...........T... | ========== ====== ====== ====== =============================== =================================== ================== 4 31 97.6 35 GTTGAACATTAACATAAGATGTATTTAAATA # Left flank : AAGCCATTTAGGCTTAAGGATAAGATATAATGAGTAAAAAAATTAATTATAATTATGCATTTTTATTTTATGATGTGAAAGAAAAGAGAGTAAATAAAGTGTTTAAGGTTTGTAAAAAGTATTTAACTCATTATCAAAAATCTGTTTTTAGAGGTGAGATAACACCTTCTAATATAATAAAATTAAGAGAAGATTTAAAGAAAGTAATAGATGAAAGTGAAGATTTTATATGTATAATTAAATTATTAAATAATAAAGTATTTGGAGAAGAAGTGTTAGGAGTAGGTGTTGAAACTGCAGAGGATTTAATTTTATAAAATTATTATCCCAACCGATTAAAAAATTTAAACTAGTCCCAATCCTTGATTTAACTGTTTTTGAGTGGTATTTTGGTTTAAAAAATTAAATTATGAAAGTTGGTTGGGAAAAAACTAACGAAAGTGTTTATTTTCAATGATCTTAAAGGTATAATATAAATAAGGAATAGCTATTTTACTATG # Right flank : AGGCGTGTAAGTATTGAAATTACTGGCTTTAAAGAAATTCGTCAAAAATATCGTCAAAAATAATTTTCAAAAAATATTTTTGATTACTTGATGGGCTTTATTTAACATATCGTTATTAACGTGGCTATAGGTTTTTAAAGTTTGCTCTACAGAGTGGCCTAAGATTTGTGCAGCAGTTTTAAAATCAACGCCATTTGCAATTAACTTTGTTGCATATGTATGACGTAATTCATGAATAGTTATATTATAGCCATGTCCTTTTAATTTTCCATTAACAATAGCACAAACAGAGTTAGTAGCTTTAAAATTTAAAATTCTATTATTTATATCTATAACATGTTTATGGTTTAATAATTCCTTAATAACTGCATAGGAAACTGGAATTATTCTATTAGAATTTTTACTTTTAACATCTCCAAACCCCCAAATACCTTTTTGTATTTTCTTCCATTGCTTATTTACGGTTATAGTATTATTTTTAAAATCTATATTATCCCAAG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 26866-26048 **** Predicted by CRISPRDetect 2.4 *** >NZ_JENX01000109.1 Clostridium haemolyticum NCTC 9693 Contig109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 26865 30 93.3 35 ...A.G........................ ATTTACGAAGGTAAGATAAACGGTATTTATACGGA 26800 30 100.0 34 .............................. GTTTTTAAGGGTGCTGGGAAAATATTTCCGTTGT 26736 30 100.0 36 .............................. CTATTTTTTCCTAATGGCTGAAATCTGCTCATAGTT 26670 30 100.0 34 .............................. TAAAAAACTCAAAACAGATAAGTGGTGGAAATGA 26606 30 100.0 36 .............................. CGTCGGCAGTAATGCTAGAGAAATAATTCTACTAAC 26540 30 100.0 36 .............................. TTTATATAAAATAAAAAAGAATATAGACAATATATT 26474 30 100.0 35 .............................. GTAAGAATATCCTTAAAATTAGATTTAGATTCTAA 26409 30 100.0 37 .............................. TTCGGATAAATATGCTTCAACAAGTCTATCCATATCT 26342 30 100.0 36 .............................. CCTTTAAAGAAAAACAAAAATTAGCATTTGAAATTA 26276 30 100.0 36 .............................. TGCTAAGGTAGCACCTTTAATTGAGAGTATATTTGC 26210 30 100.0 37 .............................. TTGAAATTATTTTAAAAATCCAAAAAATATTAGAAGG 26143 30 100.0 36 .............................. GATCTTATTTTTGCATGCTCCCAAATCCCAATAAAA 26077 30 80.0 0 ...................AT..A..T.TA | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 97.9 36 ATTTAAATACATCTTATGTTAATGTTCAAC # Left flank : AGGAACTCTTTTTAGAGAAACTAATTCTTTAATTGGTGTAGAAGCTTCGAATTTTTTAAAGAATTATAATATATCCAAAGCATTTATGGCCACTACAGGTTTTTCTATTGATAAAGGAGTTACAAATTCATCTAATTTTGAATATGAAGTAAAAAAAACAGTAGTTGAAAATAGTTCCAATGTAATACTTTTAGCAGATCACTCAAAGTTAGATACAGCTTCTCTTAAAACTTATTGTAAATTAGAAGATATTACTTATTTTATTACAGATAGAATTCCACCTAAAGAGTATGTTAAGTTTTTTGAAGAACACAATATAAATTTAATTACTCCAGATAACTAAAATACCCCTATAAGTTTTTACTTATAGGGGTATTTTAAACTTTTGAATATTATAGTTATTTTTTTATTAATTTATAGTAAATTTTTAAAATACACATAATTTTTATTATTTATAATATTTTTTTATAATAAGTTGTATTAGTATTTAACTAATTTTT # Right flank : TATACGAAATATAAATACATTTTAATATAAAAACATTGATTTTACTAGGTTTTAAAGCACTTTTTAAATTTTTAATGTAGAATAAATAAGATAATATTAGCAAATAATTTTTGACGTTTTTTTGACGCAATAGAATTGTTATCAACTTTTTAAATTTTTAGAAGATAATAAAAAGCTCTAGGTGAACCTAGGGCTTTGGGTTTGAGTGTTTATTCAAAAATAGTTTTCACGTAAAGAAAAGTACATTAAATTAATGTACTTTTAATTTTTATTTTTAAATTTTTATGCTTTTTTACAATACTTGTATATAGAAAACTTAAATTGGTTTTTTACACTACTTAGTGTTTTACTATATATAATAACTTCTTCACCATCATAATTCTTTCCTGCTGAATAATTTAATTTATATTCTTCTTTTAAATATCCTTTATACATATTTTTTATTGTATTTATATTGTCATAAGTAACTATCCATGAATGATATTTTATTTTTTTTATTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTTATGTTAATGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [81.7-93.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 2260-643 **** Predicted by CRISPRDetect 2.4 *** >NZ_JENX01000061.1 Clostridium haemolyticum NCTC 9693 Contig61, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 2259 29 100.0 37 ............................. TAATAAAACCTCCTTGGAATTTGTACTAAAAAATAAC 2193 29 100.0 36 ............................. CCACTTATAAATAACACTATGGGAAATGTAGTTAAT 2128 29 100.0 38 ............................. AATAAACATTATAACTATAATTGCAATAACCCAAACCC 2061 29 100.0 38 ............................. CTTCTTAGAAGATGAAAGAGTTTATCTAAGCAAACAAT 1994 29 100.0 36 ............................. GATAAAAACCGTGGTGCTCAAGATGGCTGGCGTACT 1929 29 100.0 36 ............................. TAAAATTTAGTCTAGTCCTTCTTCTTCTGCTATTTT 1864 29 100.0 38 ............................. ACTAAATAATGCTAATGATAATATAAATATAGATGATA 1797 29 100.0 36 ............................. AGTATAGTCCAATTTCATCTATGGGAAGTGGCTCGA 1732 29 100.0 38 ............................. ACATCAACAGAGCCTAAAGTGGTTGAAAATAAAAATAA 1665 29 100.0 34 ............................. TTTTTATTTCTTGTACTGTAATAAGTTCACTTAC 1602 29 100.0 38 ............................. ATATAAAAAATCGAGAAGGTTTATTTATGTACGGAAAT 1535 29 100.0 39 ............................. TCTAATTTAAATACTAGCAACCCGTCAATTTCTCTATAC 1467 29 100.0 38 ............................. AAGAATTTATAGAAAATGTAGAAGATTCTACAGTGTTT 1400 29 100.0 37 ............................. TTATATGTCTAGCACCTATTAATTTTTTAATATCTTT 1334 29 100.0 39 ............................. ATTACACAATAATTACATATATTTATAGTAAAGAAATAG 1266 29 100.0 37 ............................. TTATACAACTCTAATTTATCAGATGAAGAACGTATAA 1200 29 100.0 36 ............................. TTAAAATGTTGATATGCAAGACTTTAAAAGAACAAC 1135 29 100.0 37 ............................. TTTAGTTTTAATTTGTCCATTACTAGTGTCTATATTT 1069 29 100.0 37 ............................. CTAGAGGTATTGGTTATTGTAGATTTACTATTTTTAA 1003 29 100.0 39 ............................. ATATAGATTAAAGTATATCTAGGATCACTATGATTTAGA 935 29 100.0 36 ............................. ATCCTCATTCGCATTAAAGATTTTACAAATATCTTT 870 29 100.0 36 ............................. ATTACCCCCCAGTTAGATTGTAATTCTGCATTTTTT 805 29 100.0 37 ............................. TTGTAGTTTTCCCAACAATATTTCGTAACAACTTTTC 739 29 100.0 35 ............................. CTTTCAAACAAGTTGTTTGCAAGTTAGCTTTATTA 675 29 82.8 0 ...............AC..T...T....A | A,CT,T [649,654,660] ========== ====== ====== ====== ============================= ======================================= ================== 25 29 99.3 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : GAGATGAAAAATATAAACCTTTAAAGGCATGGTGGTAGTTAATGTTTGTTATATTAACCTATGATATTGAGGAAAAAAGAATAAATAGAGTAAGAAAACTCTTAAAAAAATATTTAACATGGACTCAAAATTCAGTATTTGAAGGAGAAATTACAGAAGGAAAATTGCATAAATGTTTATCTGAAATAAATAAATACATTGACAAAAAAGCAGATTCAATATACATTTATAGGGTTAAGATGAGTAAAAATATAACGAAAGATGTAATAGGGATTGAAAAAAGTTTTGATGAATTATTTTTATAAATAAATAGAATTTGCAGTATTACAAACAAATGTTCTTATTGATTCAAAGCATTGATATATCTAGAATTAAGCATGTTATTTAAGAAAAATAAAAAACATCATTGAAGGTTTACTGCAAAATTGTTTAAATTAGATATGTAGCTGTTTGCTTCAAGAGCAGTAGTATCAATGGTTTAAGGTGTTTTGAATTTTAGG # Right flank : AGCTGATTTTCCTGAAATGTATATTAAATAAAGAAAAGTAATTTATTTGAATCAAATAAATATAGATATCCTATTTATATTCTTAGAATTTTTTAAGAAACTAGCTTTAATTTATGAAGAACTGTTTTAACTGGAACATTGCTTTTAGCTTGATTATATACAAATAACACAAGGTTTTTAGCCGTTAGGCTTCGTATATAGATAATGGTATCACCTATGGTGGTTATTTGATTTAGATGATGCAACCTATATAGTTCAAGAAAATTAATTGTCAAAAATACAAGTAAAAAATATCTCTCGATAGAGATTAAGCTTTGAACTTTATAGTTATCAAAGCCTAAATGTGTTTTAAGATATTTATAGTTAGTTTCAATACTCCACCTATTAAAATAGTATTTGATTACTGTCTCAGAATTAAGTGTTATATCACTAGAAAGTATATATACAGGTGGTTTCAACTTATCACCATTAACTTCATAACAAATTAAAACTAGTGCATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //