Array 1 106827-105333 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVPN01000001.1 Salmonella enterica strain 148_14 NODE_1_length_333925_cov_46.0325_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 106826 29 100.0 32 ............................. ACGGGCAATCGTGGGATGTTGGCGACCCAGAC 106765 29 100.0 32 ............................. CCACGAAAACGGCTTGCAGCGATTTGCGGGCC 106704 29 100.0 32 ............................. GGACATCGTCCAGTTAGCAACGGACGTTATTA 106643 29 100.0 32 ............................. CAGCCGTAGAGATAGAGAATATAAACGACTCA 106582 29 100.0 32 ............................. ACTCAAATACCCGCGCTTATACTGGTGATTGG 106521 29 100.0 32 ............................. ATTTTCAAATTTCACAGCAGGATTATTTTAAT 106460 29 100.0 32 ............................. GTGAAACACTAACAGCAGCAGTTTTAATTACT 106399 29 96.6 32 ............................T GTTGCGTAGTCTGGTTAAATCAGGTGAAATTA 106338 29 100.0 32 ............................. CAACAGCAGCCGCAAAATACCATGCAGCAGCC 106277 29 96.6 32 A............................ CGAGAGATTGAGATTGTGTTACCGACAATCAC 106216 29 100.0 32 ............................. GCGGGAGGTCGTGAGGCATCGCTTAGTGGGGC 106155 29 100.0 32 ............................. TATACGCCACCTCGCCGGATGAGGCGCGGACA 106094 29 100.0 32 ............................. GATAACGCAGCCGTTATGCTCGCAGAGATAAA 106033 29 100.0 32 ............................. AAAAGAAAACCCTCAAATACGCATAACAGGAG 105972 29 100.0 32 ............................. AATCAAGTAATGTTATTTTGTCCCAAACGTCA 105911 29 100.0 32 ............................. GCGGTCGCCAGTACCTGACCACCATCAACATG 105850 29 100.0 32 ............................. CCCTCAAAATCAAATCTAAGGCGGTTATTCTT 105789 29 100.0 32 ............................. GTAAGGTTCACGCTCGCGGATTTGATTCACGT 105728 29 100.0 32 ............................. GGGCGTCAGAATGATTTACGATCCACGCAATA 105667 29 100.0 32 ............................. TTGATGCGGGTGATGCAGCTGTTAAGACATAT 105606 29 100.0 32 ............................. GTGATGTGTCGGAGTATGCAGGCTGATTTTTC 105545 29 100.0 32 ............................. GTCTGCCCCATGAACACGGTTTCATCTTGTGA 105484 29 100.0 32 ............................. TCTACCAGCAAATCCGGCAATACTGGCTGCGT 105423 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 105362 29 100.0 0 ............................. | A [105335] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTTACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126795-122983 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVPN01000001.1 Salmonella enterica strain 148_14 NODE_1_length_333925_cov_46.0325_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126794 29 96.6 32 ...........................T. CAAACGAATTATAAAAAGGCGCACCATATATA 126733 29 96.6 32 ...........................T. CCACCCACCAGCCCAGCGCCAAAACCACCGCC 126672 29 96.6 32 ...........................T. CCGTGCCAATTTCAATTAATTATTCGTCATAT 126611 29 96.6 32 ...........................T. GGCTTGCTAATTCCAATACCACTTGCTGTTTA 126550 29 96.6 32 ...........................T. CCTCACGACCTCCCGCCATTCTTCCGCCAGTA 126489 29 96.6 32 ...........................T. CCGCATCATTCAGTTTCTTTTGAGTGTCTGCG 126428 29 96.6 32 ...........................T. CCGCAGCGTATAACGCAGCGCAAAGCAAAGCG 126367 29 96.6 32 ...........................T. GTCGTAGCCAGCTTGAAAGCGCTCGTCTCCGT 126306 29 96.6 32 ...........................T. CCACTCGCGCAACTGGCACACCATTCAAGGGC 126245 29 96.6 32 ...........................T. CGCTATCAAAACGAGCGAGAGTTTATTGCTAA 126184 29 96.6 32 ...........................T. CGCACCATGCCTTGATTTGCAGCCGCCACCAA 126123 29 96.6 32 ...........................T. GGTTCAAATCCATCTGATGCGGATTTATATTC 126062 29 96.6 32 ...........................T. TGCCAGATAAAATAGATTGTGTGTAGGCGTAA 126001 29 96.6 33 ...........................T. GCGCTAATTTACAGCAGCAGGGTAATTTCCAGC 125939 29 96.6 32 ...........................T. CAATTTCACCAGACTTTGCGGAATAATAACAG 125878 29 96.6 32 ...........................T. ATAATAATGAAGCCGCTAAAAAGAAAATAATG 125817 29 96.6 32 ...........................T. TTGTATTTATTGATGCTGCAATTAAAGCGGCC 125756 29 96.6 32 ...........................T. GGATTATTATATAATTTAGCGTGCCATTCATC 125695 29 96.6 32 ...........................T. TACAATTTATGCTTGATGGTTCTGCGCCGTGG 125634 29 96.6 32 ...........................T. TGTCAAATTCGCTGAACATCATGTTGAATTTC 125573 29 96.6 32 ...........................T. GATTGGTAAATGGTTTGCAATCCGTTGAATTG 125512 29 96.6 32 ...........................T. GCTATCGCGTACACGAGAAACTTTATCTTTGC 125451 29 96.6 32 ...........................T. TGCGAGGAGTTATTCGAAATACCGCCAGACAT 125390 29 96.6 32 ...........................T. GCTTGCCTTGCCTCCCAATTGGTGCGTATGCC 125329 29 96.6 32 ...........................T. GATTACGCTGGTGGGGTGGAACCAGAGCAACA 125268 29 96.6 32 ...........................T. TCAGCCTCAAAATATTCAGGTGCCGGAACCTC 125207 29 96.6 32 ...........................T. ATGGCTTAATCGCTTGGGGAGAAGTCGACAAA 125146 29 96.6 32 ...........................T. CGAAGATGATACAGATGGCGCAGGAGCAGATA 125085 29 96.6 32 ...........................T. CCTAATAGCTCCATGCATTTTTCATCTGTGAA 125024 29 100.0 32 ............................. TTGTTATTAATCATCTCATTCTCTCGGTTAGT 124963 29 100.0 32 ............................. TCAGCCTGTGACAGTTGAGCGAATTGACATCG 124902 29 100.0 32 ............................. GCAACAGGCAGGGCGCGATGAGTGAGCAAATC 124841 29 100.0 32 ............................. GGCGTGTGAGTACATCCACGCAGAATTTAGAC 124780 29 100.0 32 ............................. CCAGACAGGAGCACTGATGCAGGATTTTTAGT 124719 29 100.0 32 ............................. GTTAACTTAGTGGTGGCTGTTACAACCTATAA 124658 29 100.0 32 ............................. CTGCAGGTAATACCTCAGCCACAAGGGGGCAT 124597 29 100.0 32 ............................. CCGCGAGCTTCTTCGTTGCGCATTGCCTTTTG 124536 29 100.0 32 ............................. TGGAGGAGCCTTACTATGTGACCGCCGCAGAC 124475 29 100.0 32 ............................. GAATGAACCGCAGTACCGGAGAGATGCTGGCG 124414 29 100.0 32 ............................. GCGTGGGGATTCTATCGTGGAGACCTGCCAGC 124353 29 100.0 32 ............................. CTAAATGGTTCTATGTAGTGACCAACGACACC 124292 29 100.0 32 ............................. CATGTCAGTCTTTCGGCGGCTGCTTTGTTGAT 124231 29 100.0 32 ............................. CTGGCGTTTTGTGCGCTCTGCCAGTCTTCCGA 124170 29 100.0 32 ............................. TCTCGGCTCGCTCGGTACGTTGCCGGCAGATG 124109 29 96.6 32 ............................T GGCCCCAACTTTGCGAGCCGGCAACCACGATA 124048 29 100.0 32 ............................. AGGGAATGAAAAACGGCTATGGTGTTGGCGAT 123987 29 100.0 32 ............................. CGTAACAACCTCTCTTAGAAAATTAGCCCGCA 123926 29 100.0 32 ............................. CCAGCCGAGGTCTTCGGAAACATACCCATCAG 123865 29 100.0 32 ............................. CAATGATTTAGCTCCGACATTTGACACTATGC 123804 29 100.0 32 ............................. AGATAAGATTGATGTGGGTAGCTGTTTATGAC 123743 29 100.0 32 ............................. TCTCACGACCTCCCGCCATTCTTCCGCCAGCA 123682 29 100.0 32 ............................. TCTTTCATAATGTCTTTGTAATGGGCGTGTTG 123621 29 100.0 32 ............................. GTACAGGATTTAGGGTTAACGCTCGACCCGAA 123560 29 100.0 32 ............................. GGATTTTGAGCCGCTGCCTTATCCATCAATGC 123499 29 100.0 32 ............................. GATATGTTTTCCTTGGCGGAGACCCATCAGAC 123438 29 100.0 32 ............................. GGAACCAGATTCTAAACATTGAGGCTACACTT 123377 29 100.0 32 ............................. TTGTTTTATCTATTTTACGTTCAAGTAGATGA 123316 29 100.0 32 ............................. ACACATTGCGCAACAAGGCGGCTAATTTTGCC 123255 29 100.0 32 ............................. TAGCGACAGAGCTTTCCCGTAAGGGCTGGACA 123194 29 100.0 32 ............................. CCGGATAGTGACGGTAATTACGGACTCCAGCC 123133 29 100.0 32 ............................. TCTGATTTCCGGCTCCGTGTATGGTTTAGCTA 123072 29 100.0 32 ............................. GCAACAGTGCTGGTGGAATTAAAAACACCGAC 123011 29 75.9 0 ...............A.AA.....GC.GT | ========== ====== ====== ====== ============================= ================================= ================== 63 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAATCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //