Array 1 6499-426 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNNR01000169.1 Xanthomonas oryzae pv. oryzae strain OS225 scaffold168, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 6498 31 100.0 34 ............................... TTGCCCAGCTGGCTGCAACCGGCGATTTTACTGG 6433 31 100.0 36 ............................... TGGCGTAATGCTGACGCAGCTAATTATGGGCTGGCG 6366 31 100.0 35 ............................... AGCGCAACATGGTGACGGTCCTGGCGGAAGAGCGT 6300 31 100.0 35 ............................... CCGAGCTATTGCCAGCTTATTGTCGAAGGGTACAG 6234 31 100.0 36 ............................... AGCCAAACGATTGGTGTAAGCCAGTCTGGTAACGAG 6167 31 100.0 34 ............................... CCTCGTTGGTGCATTCGATCTGGCTGCCCAGATC 6102 31 100.0 36 ............................... CTGCCCGAACACTTCGAAGAACCCCCGGTAGAGGTA 6035 31 100.0 34 ............................... CAATGTTGCAGGCCAGCCTGGCCGAGTATCCGGC 5970 31 100.0 34 ............................... TGTGAATTTGCAGCTATGTTGCCCTCAGCCTCTG 5905 31 100.0 35 ............................... GCAGCACCGTAGACAACAAGCAGGCATTTCAGTTG 5839 31 100.0 34 ............................... TTCGTTGCCGTGCTGCTAAAGGTTAGCTGCACAC 5774 31 100.0 34 ............................... CAGCGGGATGAGGCGGAGGCGCGGGCACGTGTGG 5709 31 100.0 34 ............................... TGACACCCTTGACCCAGATCTATTCCATGAGCTC 5644 31 100.0 34 ............................... TGTGCATTTGCAGTTATGGTCCCTTCCGCCTGTG 5579 31 100.0 34 ............................... AGCTGATTACGCCCCCAGCTACCAGACATGCTAA 5514 31 100.0 34 ............................... CTTAATCCCGGGGATGTCTACGCCGCCTCGCCCT 5449 31 100.0 35 ............................... CAGCAATCACTGCTGCTAATCCGTCTGTTGCGACT 5383 31 100.0 34 ............................... TGCCAGGAGAAGGGAAGCTCAAAACTCCGAACCC 5318 31 100.0 34 ............................... TTACTCCTCAGGGTTATGTTAGGTTATACCACAT 5253 31 100.0 35 ............................... ATTGACATACCTGCATTTCAGGCTTTTATTTTGCA 5187 31 100.0 35 ............................... TTGTGTGGCTGTATCTGCACTGTGTGTCGTAATAT 5121 31 100.0 34 ............................... GACAATGGCGTGTCAGCTGCTCTCGGTGTAGGGT 5056 31 100.0 34 ............................... GCGGCCTCCAGCCTCTCAGCAAGCGACTTCGAAC 4991 31 100.0 33 ............................... CAGGCGTCTGCAACACAGCAGCTCCAAACGCTG 4927 31 100.0 34 ............................... GTTGAAAACTAGCATGTCACCAAATCCCGAGCGT 4862 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC 4797 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG 4733 31 100.0 35 ............................... GGTTGCCAGTGAGGTCTCGCAGATGATCCCTCAAC 4667 31 100.0 34 ............................... CAGCTTAGCGGTAATATCAGTCATTTTATTGGTG 4602 31 100.0 36 ............................... GACCAACAAATTGCCAAGGCTGATATCAGACGCAAC 4535 31 100.0 34 ............................... CCAGCAGGACTTGACCGCATGGTCTTTGCAGCTG 4470 31 100.0 35 ............................... TTGGTCTTAAGCCCAAACGGCACAGCATTGTGACC 4404 31 100.0 35 ............................... AGGCTGTCGGTGACATTGGCCAGGGTGGCTTCCAG 4338 31 100.0 33 ............................... CAAGTGTCCTTACAACGGTGAGGGCTGTGTCTG 4274 31 100.0 34 ............................... TCCTTGCGGTATTTGTAAATGAACTCCTGCACCC 4209 31 100.0 36 ............................... ACGTTGTCCAGCATGTCAAAGACCACCAGGCCGGCA 4142 31 100.0 35 ............................... TCGCTCACGGACACGGAGTCATTAAACGTCATAAA 4076 31 100.0 35 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 4010 31 100.0 37 ............................... TGTCAATGTGATGCTGTAACAGGTCCGCCCTTAGCCG 3942 31 100.0 35 ............................... AACACAGTTAGGCACATATGCCAGTATCTTGACCA 3876 31 100.0 34 ............................... ATGACGGCCAACAAGGTGCGTCGCCCGGACGGCG 3811 31 100.0 34 ............................... CGGTCACGACCACGAGCCCTGGGCGTTTTTCGCA 3746 31 100.0 35 ............................... GATGCGCGCCTCTGGAACGAGGTCCTACCCCGCTG 3680 31 100.0 35 ............................... TCTCACGGCCACTGCCGACTCGTATGTCATGGTCC 3614 31 100.0 34 ............................... CATTGGTGCCTGCCTGTGCCAGTATGTATGCATG 3549 31 100.0 35 ............................... AATCGAGATGAGGCGGAGGCCCGGGCACGTGTGGA 3483 31 100.0 35 ............................... AAGCAATGGCGCTCGGCCAGCCTCTACAGATCCGC 3417 31 100.0 34 ............................... GTCGCCGGGTACCAAGCGGCAAACCTCACACCAC 3352 31 100.0 35 ............................... GCCACCCCCGACGGCCATCACACCGTCAAGGGAAA 3286 31 100.0 35 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAG 3220 31 100.0 36 ............................... TTGACAGATGATCAGTATGACAGCTTTGCCAAGAAG 3153 31 100.0 35 ............................... AACTGAAAATTAACTCTATCTAACCAAAAGGAACC 3087 31 100.0 35 ............................... CGCTACGATCCGGCATACGGGACGTAGGGTTGCAC 3021 31 100.0 36 ............................... ATCACGCGGACGAACAAGCCCTCATCGCGCGATCCG 2954 31 100.0 36 ............................... TCCCTCTGTTTGTTAATGTTCTCAACCTCTCTGGAA 2887 31 100.0 33 ............................... GTACAGGTCGGGCTGTTGCGCTCTGTAGTACGC 2823 31 100.0 33 ............................... CAGCCCCGGCGTCGGCGGCCGCGTCGAACTCCT 2759 31 100.0 34 ............................... CTGGGGGATGTTGAGCATAAGACCAGCAAGGCTG 2694 31 100.0 35 ............................... GGGCATGACTAAACTCCTCGTTGGCGTTACGGAAA 2628 31 100.0 36 ............................... TTGTAAAGCTCAGACATGGGGGCACCCTCTCCGCCT 2561 31 100.0 35 ............................... TATTCCGCCCGACCAATCGATCCGGAGGTTCGGAA 2495 31 100.0 36 ............................... CAGAGCCTACGGGGCTGGGGCAGCATCAATTGCAGC 2428 31 100.0 33 ............................... TGCTGTCAGATCCGCAGTTACTGTATAGACCTG 2364 31 100.0 35 ............................... CGTCAGCATCTGTGACAGTAGCAATGACATCCCAG 2298 31 100.0 34 ............................... CCTCACCCCGCCGGATGCACGTCTGACCGTCCGT 2233 31 100.0 35 ............................... CTCTGGGAGACGGCGGATATGGAGATGTGGGAAAG 2167 31 100.0 34 ............................... CCTTTCAACTGGGCAAGTCCTAAGCAGAGGTCAG 2102 31 100.0 36 ............................... TCCTTGCGGGCAGTAAATACATCTGGCCGTCTATCA 2035 31 100.0 34 ............................... CCCTTGGTGCCTATTGTGCCTAAATCTAGGCACA 1970 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 1903 31 100.0 35 ............................... GGCACGGGGACATCGGCGGTGCCGTCAGACGCTAG 1837 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 1770 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 1704 31 100.0 36 ............................... TTGACGGTGACGGTGTACGCGCCACCGGTGTTATTG 1637 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 1569 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 1504 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG 1439 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 1374 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 1309 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 1243 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 1177 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 1112 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 1047 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 981 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 915 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 851 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 784 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 719 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 653 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 588 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 521 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 456 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 93 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //