Array 1 5095-3672 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJSW01000016.1 Listeria monocytogenes strain BCW_2369 PROKKA_contig000016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 5094 36 100.0 30 .................................... TGCCATCGGGCCACTATTGATGGGGATAGG 5028 36 100.0 30 .................................... TTCTGGGGACTTGTACTTTTCTTAGCAGTA 4962 36 100.0 30 .................................... TAGCCGTCCTCTTCTAAGTCAACCTCCTCA 4896 36 100.0 30 .................................... CAATAGAAAAAAGCTTCTTAGCTGATACGC 4830 36 100.0 30 .................................... GAACCTAGGTGACGAACCTAACGGAAAATT 4764 36 100.0 30 .................................... AATGCTTTGTGTGTTTCACTATTGTAATCA 4698 36 100.0 30 .................................... ATCCACAAATGTGAGCATTCCTTCTAATGC 4632 36 100.0 30 .................................... AGTGGACAAGGCGACTATTACGTTAAAAGT 4566 36 100.0 30 .................................... TCGCGAATCGGACACTATGCTGCGTCTTTC 4500 36 100.0 30 .................................... TTGCAGCTAAGAATAACAGAATGATGTTGC 4434 36 100.0 30 .................................... TGCAAACTTAAGATTATCATTGTCGGAGGC 4368 36 100.0 30 .................................... CCATGTCAATATGAAAGCCGTGCAAGAGGA 4302 36 100.0 30 .................................... TCAGAAATAAATATAATTTAGGTGAAGACG 4236 36 100.0 30 .................................... TATTATTTTTGTTTATTAGTTTATTGAATG 4170 36 100.0 31 .................................... CAGCTTTCTTGCGCGCTACTCATTTTCTTAT 4103 36 100.0 30 .................................... ATTCATGTCACAGCGACAGACAAAACGAGC 4037 36 100.0 30 .................................... CATTCGTTCTGTGCGTTCATACTTACATCG 3971 36 100.0 30 .................................... CTGCTTCTACAAACCCAAACAATAAGCCTA 3905 36 100.0 30 .................................... AAGGTTTCGGGAATAGTAACCCCAACTCGA 3839 36 100.0 30 .................................... AAAAAGCATTGGAATTGTACACATTAGACT 3773 36 100.0 30 .................................... AATGGCTAAAAAGAGGATTAAAGACTTTGA 3707 36 97.2 0 ...............................C.... | ========== ====== ====== ====== ==================================== =============================== ================== 22 36 99.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCAACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCATATTTGAGAAATTAATTGAAATAGTACAAGTTTATAAATATCTATCTAAGAAAAAATTGTTAGTACTTATTAATGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGGAGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAGCCTAGAAAGATAAAAGAATCTCCACATGTTACTTTAGATTCTGATTATTTTTTACACATGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAACCCATAAAAAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTCGGAGGAAAGAAAAAATTCTGCGAG # Right flank : CTGTTTTAACTGATTATATTCTAAATACGAGTAGGGATAATGACACGCTTGAACTATATACTGCTTGGAACAGCGAGGAAGATTTCCTGTTATTGAATAAAACAGAACTGCTGATAGAGCATTTAACTATCGAAAATTTAATTTTAAGTGACTGAGAACTATTAATAACTAAAATGAGAACCTATATAACTTTTAGCACCATCCGTTAAAAAAGGAGCCCCCAACCATGAAAAAAACCTCCATTATTTTTATTTTTTGCGCATTCCTGTTAACTGCTTGCTCAACCACTACAAAAGAAATCCCTAGACAAACCATAGAAGCTACCGGCACTATTGAACAAGTAGAAATGGAATCTGTTTTAATCAATAATATCAAAATAAAAACCAATAATAACGCGCCAGAACTGAGTGTGCGCTTCTACATCAGTGGAAAGTACCACGACGAAACGGGAAACAAAATAAAACTAACCGAACTAAACAAAAATGACAATATAAAAATCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 125048-125588 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJSW01000002.1 Listeria monocytogenes strain BCW_2369 PROKKA_contig000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 125048 29 100.0 34 ............................. CCTATTAATTTCGTGTTTTTACTGCTTAACATTT 125111 29 100.0 34 ............................. ATAGAATCATCGGAAATACGTATGCCGAACTCTT 125174 29 100.0 36 ............................. CATGATTTCTTTGTCGTTCATAATAACGTATTGATT 125239 29 100.0 35 ............................. GTTTTAAAAGTACCGCAATTTATTGCTGATTGGAT 125303 29 100.0 35 ............................. GGAGGAACAGCGACCGGTTTCGGTTCAGACATTAT 125367 29 96.6 35 ..........T.................. TATTTTGAAATATCTAAAGCTATCTCACTGTTTAG 125431 29 100.0 36 ............................. GACAATGTATTATCAATTGAAGTGCTTGTAGAAACA 125496 29 100.0 35 ............................. TGTAGTCATCAACTTGTTCAAAGTATTTCACTATA 125560 29 82.8 0 ......A........CA.A....A..... | ========== ====== ====== ====== ============================= ==================================== ================== 9 29 97.7 35 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTAAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCGGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGATTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGATCTTGAGTAGCGTGAAAAACACCGGGGATCGACAGAAAGTTGTAAGTGGTTGCGGGAAGAGGGACTTGGCGATATTTGCTTGGGGAAACCTTCCGGATAAGAGAGGATTTTTGCTATTTTTAGGTAGGTCGACAGAAAGGAGCATTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCCCTTCATATACACCATCCATCAAAACCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATTATTAAACTCTTTCAAAACATCCGCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCTTCTGTTTCTTTCAAGTTTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTATATTCTTGTTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATATGCGCCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTACTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTGTTTTTCACTAGTTTTA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //