Array 1 149867-147700 **** Predicted by CRISPRDetect 2.4 *** >NZ_VINZ01000009.1 Salmonella enterica subsp. enterica serovar Uganda strain HIY0222 NODE_9_length_165781_cov_26.201619, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 149866 29 100.0 32 ............................. TGAACTATATCAATATAAAACTCACTAAAATA 149805 29 100.0 32 ............................. CCACACGTTGAGCGTAAACCTCTGCCGTTTCC 149744 29 100.0 32 ............................. ACTCCGCCACCCGCGTGGCGGGTAATAAAAAA 149683 29 100.0 32 ............................. TCAAACATCAGCGATTCATCGACAGCGTATGA 149622 29 100.0 32 ............................. TATTCACTAAGCATTTCATTTTTTATAATGAT 149561 29 100.0 32 ............................. CGACCCCCCATTTTTCCGAATCGTAAACGAAC 149500 29 100.0 32 ............................. GGAGGTGATAACCGCCTCGCTGAACGCTACGC 149439 29 100.0 33 ............................. AACATCCAACGGATTCGCTTTACTCAACCATGC 149377 29 100.0 32 ............................. TCGTTTCGTGTTGCTTCATCTGGCAGGTCCAA 149316 29 100.0 32 ............................. TCAGTTACCGATGTTAAAGCAAAATCCGCTAA 149255 29 100.0 32 ............................. CGTAAGAGCCAGGCGATGCCAGGCACTAACTC 149194 29 100.0 32 ............................. GCATGACAGGGCGTATTCATCCCACGTGCGTT 149133 29 100.0 32 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCG 149072 29 100.0 32 ............................. ACAAAAGAAATTGTGACACCTAACACGGCCGA 149011 29 96.6 32 ............................T GTAGTTATACTAATAATGTAGTTGAGTAAGAG 148950 29 100.0 32 ............................. GAACTGATGGGCGCCATTACCGGCGAATTAGC 148889 29 100.0 32 ............................. GACTGGTATATCAACAATCATGAGCAATTCTG 148828 29 100.0 33 ............................. GAATCCCAATCTATTACCGGCACGTAGCCGGGG 148766 29 100.0 32 ............................. GCAATATCAACCGGGCGACCTGTCGCCTGCTC 148705 29 100.0 32 ............................. CTCTACGCTCGTTGCCCACGGAAAAGTCTCGT 148644 29 100.0 32 ............................. TAACCGGCACCTTTACCCTTGCGGAGGCTGAG 148583 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 148522 29 100.0 32 ............................. CATGGCTGAGGGGATGGCGCTTAAAGACTGGC 148461 29 100.0 32 ............................. CGGGCGTTAACGTCCGAAGAGGTTCGCGAAAC 148400 29 100.0 32 ............................. TGGCACGCCCCCGGCTTCTCTATCCGCGCTTT 148339 29 100.0 32 ............................. GTCACGTTCTGGAGTGTTCACAGCGTGAATTG 148278 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 148217 29 100.0 32 ............................. TAACGCTTCAATGTCGCAAGCTTCAGTTCGTT 148156 29 100.0 32 ............................. GATTTACTAAGGTCAACGAGGGATTGAATTGG 148095 29 100.0 32 ............................. GCGAGGATCTTGTGTTGCAGGTTGGTCTCGCC 148034 29 100.0 32 ............................. CAGCGCCGTCCCGCTGCGCAGATGTTCGGTGA 147973 29 100.0 32 ............................. CAGGTCTATTGGACGATCGATAAAATCATTCA 147912 29 96.6 32 .............C............... ATAATAAGCTCAATAATGTAGATATTGAATCA 147851 29 96.6 32 .............C............... ACGACGGCACAAAAGAAATTTCCACCGTGGAT 147790 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 147729 29 93.1 0 .............C.A............. | A [147702] ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : CGCCAGTGCTGCGCATTCTTGCTCCGGAGTGGGATGACGCGCCGCGAGAGAACTGGTTATCCAGCGCCATGCGTAACAGCGCCTATGTCTATCCCGATCATGGGCGCATGTGGCTGACGCAGCGCATATTACGTGAGCAGGGGACGATTCGGATGCCGCAATCTGCCCGCTTGTTGATTGAGTCGGTCTACGGTGAGGATGTCAACATGCCGGTTGGATTTGCAAAAACCGAGCAATTGCAGGAAGGCAAATTTTATTGCGACCGGGCATTTGCCGGCCAGATGCTGCTTAACTTTGCGCCGGGCTACTGTGCTGAAATTAGCGATTCTTTACCGGAGAAAATGTCAACGCGGCTGGCGGAAGAGTCTGTCACGCTGTGGCTGGCGAAAATCGTGGATAGCGTCGTAACCCCTTATGCCAGCGGTGAACACGCCTGGGAGATGAGCGTGCTGCGAGTACGTCAGAGCTGGTGGAATAAACATAAAGACGAGTTTGAAAAA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 160365-160093 **** Predicted by CRISPRDetect 2.4 *** >NZ_VINZ01000009.1 Salmonella enterica subsp. enterica serovar Uganda strain HIY0222 NODE_9_length_165781_cov_26.201619, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 160364 29 100.0 32 ............................. GTGGATATGCTGGCCGAGAAGGTTGGAACAGA 160303 29 100.0 32 ............................. CCATCCTGGCGGAACTGTATGCAGAAACAGGC 160242 29 100.0 32 ............................. GACTACCCGGCATTTGTGGACGCATATCGGCA 160181 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 160120 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //