Array 1 410898-412084 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOYZ01000124.1 Salmonella enterica subsp. enterica serovar Kentucky str. 5349 SEEK5349_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 410898 29 100.0 32 ............................. CGTGCAGGGGGTTAAATAAAGAACACGCTGAC 410959 29 100.0 32 ............................. CGCTTGGCGGTTATCATGGCCGGTAATGACTC 411020 29 100.0 32 ............................. GACGCTTACATCTCACCGAGAGATTTTGAGGC 411081 29 100.0 32 ............................. CGGGGATTAGCTCTAAAAATATTTTTATTTTG 411142 29 100.0 32 ............................. CAGTATTTCGGCATGGCAAGCCGCAGCGCGAA 411203 29 100.0 32 ............................. ATAATCGGGATACATTTTGTTGTCCGGGTGGC 411264 29 100.0 32 ............................. TCAGAGCCTTTTTGATGAAGTACTACGGCAAC 411325 29 100.0 32 ............................. GCGTACAGCCGTATGCCTCAGACTCCCCACGA 411386 29 100.0 32 ............................. GGCCGATATACAGTTTTTACTGTGGGATGCGC 411447 29 100.0 32 ............................. CGGAAATTCAGGGAACCCCGGAAGCGATTAGA 411508 29 100.0 32 ............................. CAGCAGGACGACGACCCGCGCCCCCGCGTCGG 411569 29 93.1 32 A...........T................ GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 411630 29 89.7 32 A...C.......T................ CGGACATTGTTCGTGAGCGAGCTGTTGTTCGT 411691 29 93.1 32 A...........T................ ACGGGTTAGCGCCTGCGGATAATGCCCAGCAC 411752 29 89.7 32 A...........T........G....... GTGGCAATGGTATCGCTATACGAAAGCGACGT 411813 29 96.6 32 .......T..................... TTCGTGTATTTTGAGTCGTTTACCGTATCTGC 411874 29 100.0 32 ............................. CGCGCCGCACGTTCGGTAGCGTGGCTGAGTTA 411935 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 411996 29 100.0 32 ............................. GCAACAGTGCTGGTGGAATTAAAAACACCGAC 412057 28 96.6 0 .......................-..... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 428243-429326 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOYZ01000124.1 Salmonella enterica subsp. enterica serovar Kentucky str. 5349 SEEK5349_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 428243 29 100.0 32 ............................. CGCCCCTCACCACCGTGGCCGCGTGCCGTTCG 428304 29 100.0 32 ............................. GCAACTATGTTTAACGCGGCCAATAACGATTT 428365 29 100.0 32 ............................. ACCGGGTTGCCGTAGGTGCTGGCCCCCTTGAT 428426 29 100.0 32 ............................. ATTTTCCTCTTGATCCGACTGATAAAACAAAC 428487 29 100.0 32 ............................. CCAGTCTGTATGAGGCTGCGATTGTGTGTTTT 428548 29 100.0 32 ............................. CCTGTAAAACTGATTTCAGGCTGGTTAGTGAC 428609 29 100.0 32 ............................. TAACGCCCGGCGGTATAGTCGATTTCGTGCTG 428670 29 100.0 32 ............................. ATTTATCCATTAGTCCCATAGCTGAGTCTCTT 428731 29 100.0 32 ............................. TCAACGTTACGACCGAACCACACCGATAAGAA 428792 29 100.0 32 ............................. GCACGGGTACGCCGAAAATCGGGGGCTATGCC 428853 29 100.0 32 ............................. GGGATCGGCGAGTCGTTCGTGTTTGCTATTTC 428914 29 100.0 32 ............................. GTCAACGCCAATGACCGGGAATTATCCCGGAA 428975 29 100.0 50 ............................. TTTCCGCTCTCTCTCGTCCATCATTCCGCGCCGGCATAACTGACGATCAG 429054 29 100.0 32 ............................. GCGCGCAACCCGGCATTTCACAGAAAATTTTT 429115 29 100.0 32 ............................. CTGGTCCCGCGTGTATACCAGTATTTACCGTG 429176 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 429237 29 96.6 32 ..........T.................. GCGTATGAGCGCCCAGCAGCGAACGTGAATCT 429298 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================== ================== 18 29 99.8 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTAGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : CCGCTTTGCTGGCAACATTCACCACATAGCATGTGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //