Array 1 189866-190430 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVXF01000023.1 Campylobacter concisus strain AUS22-Bd2 scaffold_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 189866 37 81.1 36 TCA.TGTT............................. TTTGTAATACCTGCTTTTGTTTCGGTTGCAAGTATT 189939 37 97.3 35 .....................C............... TTTTCGTAGTTAGTCAAAACTTCTATGTCTGCATA 190011 37 97.3 42 .....................A............... GATTTGCCATTGCTAATCACCATCTCAGCGGCGGGCAAATAT 190090 37 100.0 39 ..................................... ATCTATCATTGCATACCTCACTGATGTAGATAGGTTTAT 190166 37 100.0 38 ..................................... TTTATGAAATAAGTACCATTGGCTTTTTGTTGAGCTTT 190241 37 100.0 36 ..................................... ACTAGCTCTATGACGTGAGCAAAATCCTCATATGAT 190314 37 94.6 40 .......................T........A.... ATTTTACTATAACCCTTAGACTTACCATTTGAGATAACCA 190391 37 91.9 0 ..........T.......T.................T | C,AA [190420,190422] ========== ====== ====== ====== ===================================== ========================================== ================== 8 37 95.3 38 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : ACGCTTTTTAGCGCATATCCAAAGGCTCCTCGCACCTGTGAGCCGATAAAAAATGGCGGCTTTTGTGACGGCTCAAATTTCACTCTAAGCTCGGCATACCTCATCTAAACTCCTTATCTTCACATAGTCTAAAACCACGCCCACCATGCTCTTTTTTAGAGCATTTTTTCTATTTATTTTAAGTTTGGGTATAAATTTATTAAGAACTGGTAGTTTTATCAGCACGCCAAGACTATCTCTTATCGCCCCTATATAGCGAGAAAAGGTCAAAATCATATTAGTTTCGTTATTCACTTCAACGCTCGATTTTAAAATTGTCTTATTATATATGATTTAAAGGCAAATGTTTATGATTTTTAAATTTTTGTTTAAAAATTATTATTTTTGTATATTTTGCGCACCTTTATCGCTCTTGGTTTTTAGCTTAAATTTCCATCTTTTTGGCTAAAATTTCAAAAATTCGTGATTTTAAAGCTATTTAAAATAGGTTCTTTTACTTA # Right flank : TTTGGTAAAGTGTAGGTAGTGGCTTATATTGTTATTTGTAAAAATAAATGAGTGGTGCTTATATGCGTTTATTGGATAAATTTAGATAAGAATAGATTGGCTTAGGCTTATGAAGGACTGCAATAATGATAGGTTTTTGTGATTTGCGTAGATAAATAAAAGCTATGAAAACGAGCCCTGCAAGATAAACCAAAAAAGAAATTTCTACGCCACCAAGATCGCCTCCGACTCAACACTCCATATCAATCAACTAGGCGTCTTTCTAGGCCTTAGTAAAAACAAATTTACTATAAAGCAATACGGCAAAATTTACAAAGAATTTCCCATCTCTAAAATTTCTCGCATCATCGTTGATAGCGAGTATATCTCGCTATCCTCTGCGGTGATCTGGCGCTGCGCAAGAGAAAAGATTCACATCGACTTCATAGACAAGCACTACGTCCCATACGCTACCTTGCTAGCTTACAATAGTACCTCTACGCAGACAGCACACAAACAAG # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:0, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA // Array 2 192345-193207 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVXF01000023.1 Campylobacter concisus strain AUS22-Bd2 scaffold_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 192345 37 100.0 36 ..................................... ACTTCTACCTCCAAGACATCACACAACTCTATCATT 192418 37 100.0 39 ..................................... TATCTACCCCTGTTAAGGTAGCAGGGATTTTGATATAGC 192494 37 100.0 36 ..................................... GAAGAAGCTAATCTCTCAGCTTCTACTCTAGCTAGA 192567 37 100.0 40 ..................................... ACCCACTAGGGATCTTGACGTAGATGTGTTCTACGCCACT 192644 37 100.0 40 ..................................... ACTTGTTTGTCTCCCTTTGAGACTATGTTATAGAAAAGGT 192721 37 91.9 38 ..................C..TC.............. TATTCTTTATCGTCTGATTTTCTTTGTCTGCAATTCTC 192796 37 86.5 38 ..................C.CTCT............. GCGACGCGACAATAGCTTTTCTTTGCTATCATTTCGCT 192871 37 91.9 42 ..................C..TC.............. GCTACACGACAATATGACTTTTTAGCTATCATTTCATCATCT 192950 37 91.9 44 ..................C..TC.............. AAATCGCTTACTGCTTTTTCAGTAACCGCTGTGTCCTCTGCTTT 193031 37 94.6 38 ..................C..T............... CAGCATCGCTTTGATTAGTTACATTTCTGTCTGCAATG 193106 37 91.9 29 ..................C..TC.............. TCGATCAAGTAGCCACGCTCTACTAGCTC Deletion [193172] 193172 35 81.1 0 ....--............C...C.......C.A...A | T [193206] ========== ====== ====== ====== ===================================== ============================================ ================== 12 37 94.1 38 ATTTAAACAAATTTGACCTGACTAAGGGGATTGAAAC # Left flank : CTTTGAGCTATGCGATAAAAAAGGTATCTTTGAGATGCAAGAGCTCTTTGTTTAGCTTATGTAGTTCTTAAATTTCTATTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCCTTTTGGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTGTCAAAATATCTCTCATATATTTGCGAACTTTTAGTTATGCTTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATGCCTAAATTTAGGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACCCATACATTTGCGAACTTTTTTGAGCTTTTCGCGAATTTTAGGTATCTTTAAAGCCGGTTTCTTAAATAATTTTGCTAATTTTTTCTTTGCAAAAGTAGTCTTTTAGGCT # Right flank : AAATGGTAAAGCGTAGGCGCTTTATGTTGTTACTTATAAAAGATGAGTAGTGCTTATATGCGTTTGTTCGGTAAATTTAGATAAGAAGATGTGGAATGATAGGTTTTTTGCGATTTGCGTAGATAAATAAAAGATACTTCAAATGAGCCATGAATTTTGCTTCATGGCTGCATGGGCCAACTATTTAGAGGTTAGCTTCATGCGAAATGTGCCCTTAGTGGTTTGGACTTTGGTATAGCCACCAAAGCTTTGACCCACTTTTTGATGAGCACGAGCAGATGAGTAAGATCTGCTTGATGATGAAGAAGACTTTGAGTAAGAACGTGAATAGCATTTTGCCATTTTAACCCCTTTGTATTGAATTATTTTGTTTTGTTGAGAGAATTATAAAAGAGCGTATGGACATATTGTGTATAATTCATAAAAAACTTTAGAGAATATAAAGGATAAAGTAATGGACGCCCAAACCAGGATACTATGGCTACTTAAAAAGCTAAACC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:0, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCTGACTAAGGGGATTGAAAC # Alternate repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //