Array 1 560974-561341 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_SAXT01000005.1 Brachyspira aalborgi strain W1 W1_contig5, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	===============================	=====================================	==================
    560974	    31	 100.0	    36	...............................	CTTATAATTTCGATTATAGCAGCATTTAAAATATAT 	
    561041	    31	 100.0	    35	...............................	GCGTAAGCGAACATGGTTATGTATTGAATATATCT  	
    561107	    31	 100.0	    37	...............................	TATTTTGTTTTTATTTTCTTTACGATGTTTATAATAG	
    561175	    31	 100.0	    36	...............................	ATGTGGAAAAACTTATGGACGGACGCAAAGTTGACA 	
    561242	    31	  96.8	    37	G..............................	TTATTTGCGGAGTTATGATAAATATGCTCTAACAATA	
    561310	    31	  71.0	     0	.........T...TTT....AA..AA....A	|                                    	A [561319]
==========	======	======	======	===============================	=====================================	==================
         6	    31	  94.6	    36	ATAATAAATCTAACCATATTGGAATGTAAAT	                                     	       

# Left flank :   ATTTGCTCGGAGAAAAAGAATATTCTCCGTTTAAAATATGGTGGTAGAAATGTATATAATTTTAATATATGATATTCAGGTAAACGATGAAGATAATCCTTATGTATTGAAAAAAGTTTTTAATATTTGCAAAAGGTATCTTAATCATATACAAAAATCGGTATTTGAAGGCGAACTTTCAGAACCTAAATACCTTAAATTAAAAGAAGAGCTCTTTGACGTATTAAGAGAACATAAAGACTCATGTATAATATTTAAAAGCAGAAACGAAAAGTGGCTTGAAAAAGAGTTTTTAGTGAAAGAAGATATTGACAAAACTTCAAATTTTATATAAAATACAAGTATGTCGATGTATAATCTATAATAATTTGCGGATTATCGACAGACGATTTTTAAAATTAATGTCGTATTTTGTATTGTTATATTATTTTATATCAATACTTGTATCAAATTAATATGTAGAAAATATTAGTTTTGCATATTTCAGGGAGAAAAAACGG
# Right flank :  ATATGATTTTAAGAGACTAATTAAATATAATAATTTATCGTTCCTATAAATTAACTAAATCAATATATTTTAGACATATCTCATTTATACTATATTTAATACTTTTTAAATATTTTTTATCGTCATCATCAATAATATTAAAAAATAAGTTTATTAAATTAATTAAATCATCACAGGTAAACTCTACTGGGTAATGCTTAAATGTTGATAGCAAATCTTTACTAAAATTTACCTCTTCTTTAAATATAATTGAATAATAGTTCATTCTGTCCATTTCATATTTATTATTAATTCGTATAAAATTACCGTTTTTATCTATATATTTTATTGGCAACTCTGGTGCCGTAATTATAAATTCTAATACATTATAATTTTGTATAATATTAATATAGTTCTTTTGATATGTAATACAATGTTCATTCTTATAATTTGTTATCCAATAAATATCATGTATGTTTTTTATATCTAAAACATTTTTTAATAATTTTAAGGCACTAAAA

# Questionable array : NO	 Score: 5.99
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     ATAATAAATCTAACCATATTGGAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:80.65%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-1.10,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-11] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [73.3-85.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.78,0.27   Confidence: MEDIUM] 

# Array family : NA
//