Array 1 13124-14371 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZCO01000070.1 Salmonella enterica subsp. enterica serovar Havana strain 87-0094 NODE_70_length_20606_cov_3.57162, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13124 29 100.0 32 ............................. CAACCACTCCGGGAGCGGCTGATCGTCAGTTA 13185 29 100.0 32 ............................. GAACGTTCAGCGGTGCGTTTACGACGCTGATA 13246 29 100.0 32 ............................. TTTAACGCCAAAGCGAATCGCCGCACAGAGGT 13307 29 100.0 32 ............................. GCAGCCTAGAGATTGGGCGCTCCACTAGTAAC 13368 29 100.0 32 ............................. AGGACAGTGCGCCGGGAACGTTAGAGGAATAT 13429 29 100.0 32 ............................. TGGTGCCTGTTGAGACTTTCACGTTTCCGTTG 13490 29 100.0 32 ............................. CAATCAGATACTTATCCCTCGGAGATATCTGG 13551 29 100.0 32 ............................. TCGGTTATCTGGGGAGCGGACGGTTATTAATT 13612 29 100.0 32 ............................. GGATTCAACCTTTTGGGTGATGTGCTGATGCT 13673 29 100.0 32 ............................. CGTGCAGGGGGTTAAATAAAGAACACGCTGAC 13734 29 100.0 32 ............................. CGATCGTGAATAATTTCACGCGCCGGCACAGT 13795 29 100.0 32 ............................. ATGGGCGTGGGGAGAGCGATTATTAATGAGGT 13856 29 100.0 32 ............................. GCGTGCCACGCAGGGGATCTATCAGTTCGACC 13917 29 100.0 32 ............................. CCACCGCCTGAACTCGCCTTGCTTCACCGCCT 13978 29 100.0 32 ............................. GCAAACACGCTCATAACTACGGCCAGAAATGC 14039 29 100.0 32 ............................. ATCACATCCTCCGAGCTTAGTGTCGCACTGGA 14100 29 100.0 32 ............................. GGAATATGAAAATTATTATTTTTGCAACTGCA 14161 29 100.0 32 ............................. CGTTTCTCACCTTTTATTCCACAGCAGACGAT 14222 29 96.6 32 .................A........... GCCCGATCCCATCCTGGTATCGAGCCTCTGAA 14283 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 14344 28 93.1 0 ............T..........-..... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13475-12040 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZCO01000084.1 Salmonella enterica subsp. enterica serovar Havana strain 87-0094 NODE_84_length_16341_cov_3.48199, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13474 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGTCCGTATT 13413 29 100.0 32 ............................. GGCCTGATGAAAATTGCCGATAGCATGGACAA 13352 29 100.0 32 ............................. CCTTGTGTGCAATGCAACAAAGGCGAACTGGC 13291 29 100.0 32 ............................. ACACTCAACGCTGTAGATGTAGTCAGTAAACC 13230 29 100.0 32 ............................. GCGTGGAGTAATGGGCGGCTAAAACTGCCGGA 13169 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 13108 29 100.0 32 ............................. GGACAAAGACAACGAGCGCATGGTGCATACGG 13047 29 100.0 32 ............................. AGGCTGGTGTAATTATCGCAGGGCATGGGCGG 12986 29 100.0 33 ............................. ATCGGGCGGGATATGTGCTGGATTCGTATTAGC 12924 29 100.0 32 ............................. GTTGAATAATCCCCGCACATCATCCTGTAAAA 12863 29 100.0 32 ............................. CAGTCTGCGGGGTTTCCTGCGTGTAATGAAGT 12802 29 100.0 32 ............................. GGAAAAAACGCTTGTCGCCAAGTATGTTTTTG 12741 29 100.0 32 ............................. CACAGAGTTAAACGCCGCTGCAGCGCTGTTTA 12680 29 100.0 32 ............................. TTTTTATCACGCTCAGACCTGAAAACAACCGA 12619 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC 12558 29 100.0 32 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAAC 12497 29 100.0 32 ............................. TGTTCCCCCAAGGTTCAAAAATTCAATATGAG 12436 29 100.0 32 ............................. CCTGGCACTCTAAAGCGGTGCGCCATACCCGG 12375 29 100.0 32 ............................. ATGTCTGGCAGATACTGAGTTTCCAGCTTGTT 12314 29 100.0 32 ............................. ATTGTTGCGCCACCAAAATTTTGAGCGCCACG 12253 29 100.0 32 ............................. CCGACATGGGCAGGATTGCTGACGTTAGTCGA 12192 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 12130 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 12069 29 96.6 0 A............................ | A [12042] ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAAGGCGCTTGAGCTGGATATCAACGTGGATGGCGCCCAACTCTTTATTCTTGAAGATGTCACTGGAGCCGGAAAAACAGAGGCGGCGCTCATATTAGCTCATCGACTGATGGCGGCAGGTAAAGCGCAGGGACTCTATTTTGGACTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGTATGGCGAACACCTGGCTGGCGCTGTATCAGCCGGACTCCCGTCCCAGCCTGATTCTGGCGCATAGCGCGCGTCGCTTAATGGATCGTTTCAATCAGTCAATATGGTCGGTCACTCTTTCTGGTACGGAAGAACCCGATGAAGCGCAGCCTTATAGTCAGGGATGCTCCGCCTGGTTTGCCGACAGCAATAAAAAAGCGTTGTTGGCGGAGGTTGGCGTAGGCACGTTGGATCAGGCGATGATGGCGGTAATGCCATTTAAACATAACAACCTGCGGTTACTGGGTCTTAGCAACAAGATTTTACTGGCTGATGAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGTGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //