Array 1 7225619-7225285 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011799.1 Streptomyces sp. PBH53 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7225618 29 72.4 32 ACCA.......GGGT.............. TGACCACGCGGGTGGTGGCGCTGGAGACCGCG 7225557 29 100.0 32 ............................. ACGGTCAGGCTCGCGGCGGCCTTGCGGGTGGC 7225496 29 100.0 32 ............................. GGCCCCACCGGCAACGAGACCGCGCCTCACCC 7225435 29 96.6 32 .......................A..... CGCTTCCGCCGTGAGGTGCTTCACCTGACCGG 7225374 29 100.0 32 ............................. CCTTCGGCCCGGTACACATGTTCCTGAACCAC 7225313 29 93.1 0 ...........................AT | ========== ====== ====== ====== ============================= ================================ ================== 6 29 93.7 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TCGTCCAGTTAGGGGCGCGGACCTGCGGTGATGCCACCGTGTTCGTTGCTGACCTGGGGAGTTGCGTTTTTCAGCGTCTTTCACGGGCGTGCAGTCTCATGCGGTCGGAACTCCCCACTCGCTCCCCAGCGACGCGGGTACTCCCCAGAGTCTCCCCAGGAAAGCCGTCGACCCCGGCGGCGGCGCGGCTCCAGCCCGCCAATATGGCGAACGCGCTGAGTGACCGACGTGGGTCAGGACGTGCGCTGGGGCACCCCATGCGGTCCGATGCCAGCACAGCTGGCTAACCTTGTCGCCTTGTGTTGCGGCCACTCGGGACCATCCCCGTGGGTGCGGGGAGCAGGGAACGCGGACCTGGAGAAGGTCGCCGACCGGGGGACCATCCCCGCGGGTGCGGGGAGCAGCCGCCACACCTATGCATCACGACCGACGGGGTGGGACCATCCCCGCGGGTGCGGGGAGCAGTACGAACTCATCGTCACCCGGGCCGGCGGGGAGGG # Right flank : GGCGGTGGAGGCAGAGCCCTCACATTGATCGCGTCATTCCGCCGATTCGTCTATATGCGGCAGAAATCGGCCTCGTCCCGTTGCAAAGAGTAAACATAAGCAATAGCTTGAAACCTGGTTCTTGCCTACGGCTTAGGAGGCATGGTGGCTTTATTGGTCAGGCGACAGGAAGTCCCGGTCGAGGTAGATTTTCATGGATGGGCCTTGCAGGACTGGGACGACGAGAATGTACCCAGCACGTTCCCTGACGGTTTCAAAGGTGATGCGTTTCTTACGGCTTTTCAGGGGCGCTTGGACTTCGCGAGCGCCGGCCATACTCACACTGCGAATCTTACTGTCGAGGTGTGGGACGGTGAGCCTTCGAGCGTGGCTGGTGACTGGGACGAAGTCGCGGAGGCCAGCATTGCGTGCGAGTCAGGCAGGCTTCGGGCCTGGGCTGTGGCCGGTGGCCCGATGCCCGAGACGATCGAGTTGTCTGATCAGCCGAGGACCTGGGCGGT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 7240617-7241440 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011799.1 Streptomyces sp. PBH53 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 7240617 28 75.9 33 .G...G.....G..A........-.A..T CAGGCGGCCGTACGCCAGGAGGAGCGAGGCCAT 7240678 29 82.8 32 G.T........G.....A.......C... CAGGTCGTCAACGTGACCGGCGCCGATCTCAC 7240739 29 89.7 32 ...........G..T...A.......... GACTGCTCCAGCACGAGGTAACGACCGTCCCG 7240800 28 93.1 32 .....-.....................G. GACGACACCGCCAACGCCGGTGCCATCCTGTC 7240860 28 89.7 32 .....G...........T.......-... GGGGCCGGCGACATCCAGCGCGCCAAACTCGC 7240920 29 86.2 32 G....T.....G.T............... GGCTACCTGGCCGATCTCTGCGTGGAGATAAC 7240981 29 93.1 32 ...........G..T.............. AGCGCCGCCTGGTCGGCCAGGGTGATGTCGCT 7241042 29 82.8 32 G..T.......G.GT.............. CGAGCTGATGCCGGCGCTCGGGACGTTCTTCG 7241103 29 100.0 31 ............................. AGCAGCGGCGGGATGGCGAGCCCGTGGCGGC T [7241131] 7241164 29 89.7 32 ........TC..............T.... GAGGGGTAACGGCCTCCGGTAGACAAAGCCTC 7241225 29 93.1 32 .............T............T.. GAATTCTCCCGCTCCCCGGTATCCTCCGGGGT 7241286 29 100.0 38 ............................. ACCGAGGACGCGAAGGCCGGGCTGGACGCCTTCTGCCC 7241353 29 75.9 31 .CC.C....C.G.GT.............. TGCATGGTATTTACCGAGGGGTTCGACGCTC 7241413 28 79.3 0 .C.............A.A..C.-C..... | ========== ====== ====== ====== ============================= ====================================== ================== 14 29 88.0 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CTCAGCCCCTTCGTCAGTAGGACTGCTTCCCGCGCCGGGGATGGACCTGCAACGGGCACAGCCATCCAGGGCTGGATCTGGCTGCTCCCCGGCGGAGCTGGGCGCGGCGCTGCTCGTTGACCTGCTCCCCGCGCCCGCGGGGATGGTCGACAGACAGCGTGCGATGATGCCGGATTCTGTCTCAGTCATGGCTGTCAGACCCGCGAAGTACCGTCGAGGCGACGACTAGGAGGAAGCGTGGCCGACTACAGCAGCGAAGCCCGAAACTATGCCAAATTTACTGAGAAGGAACTCGCGAAGGTCACTGATCCCGGACAAAGCGCAACCGCGTTAGCACTGTTAGCGCTTACCCATGCTGTACTCAGCACTGGCGAGGACGTCAGAAAGATCAGTTCCACCCTGTGGGAGATGGAAGACGTCTTCCGCAGTTGAAGACGGGCCTTGTGCTCTGCCCCTGTGTGTGATCCTTATCTGTCCTCCCCACTTGACTACCGGGATGG # Right flank : CGGGCAGGCGCGGCGAGATACGTCGCCGCCGCCCACCCCGACAAGAAGGTCACCCCCTTCCGGGCATGAGCAACTGCAGGTCAGCGAAACCCGGAGACGGGGGCACGACCTGAGACCTACTCTTAGCAGCATGACAGAGAGTGAGTCGCTGCCTACCACCAGCGCTTCCGGAGAAGTCGTACGGCGCGAGCCCCGCCAAGCCGCCCTTGACGGCCTCCGAGACTTCCAGGACCTGATCCTTACCCGTCTCGGTGACCTGGGACTGCCGACCGAGGACGTGCTGGTCGCCCTCAACCAGCGGCATGCTCTACTGCAGAGCACCGAGCACGCTCTCGCTGCCCTGGACGACGAACAGCGGGCGAGGTCTACATACATAGCAAAAATGATCATGGCGGGCTCTGTCGGGTTGTTCGATGCGGCGCTCAACTACCTCTGGGACGAGACGGTCATCGAGCTGCGGAAGCGCGTGATCGGTTACGACCTTTCGTACTTCTACGCTG # Questionable array : NO Score: 4.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [19-19] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 7243065-7243562 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011799.1 Streptomyces sp. PBH53 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 7243065 30 96.7 31 ............................T. GAAGGTCGGGCAGATCGGCGCCGGCCGCCGT 7243126 30 93.3 31 .....T.......A................ ACAGCTGGCAGCCGGCGCTCACCGCTGGTGC 7243187 30 90.0 31 .............CC..............A ACGGGCCGAGGATGTCAGGGTCCTCGATCGT 7243248 30 100.0 31 .............................. GGCTGATGACGACCAAACCCGGCTCGAAGGA 7243309 30 93.3 13 ............................TG CAGGTCAGCGTGT Deletion [7243352] 7243352 29 80.0 30 .C..-.......TC....A..........G CCGGCGGGCTGAAGAAGAGCCGGTGAAGGC 7243411 30 90.0 31 .......G.................C...C GCGCCATGATCGCCTGCGCGTCACGTGGGAA 7243472 30 83.3 31 ...........A.CC.............TG TCTTGAGCCGGGCCCCTGAGGGCCGTACACG 7243533 30 83.3 0 ..........A..CC..........A...C | ========== ====== ====== ====== ============================== =============================== ================== 9 30 90.0 29 CTGCTCCCCGCGCGTGCGGGGATGGTCCCT # Left flank : GGAGGCGCTCGAAGAGCTGCTGAACGTGCATCTCGCCTGGGACAATTTCTACAATGAGCCCAGAGTGGCCCGCCGACTCGCCGAGCTCGTCGGACAGCATGGGTCCGTCCCGGACAACCTGGTCCGCCAGTACGTCAAGACCCTTGTCACGGTGTTCCTCACCAACGGCCACGGCGAGGCGAAGGCCGCCAACCCGATCTACCTCGACCTGATCGGCCGGTTCGACCCGGAGCAGGCTTCGATCGCTCTCCGGGCCTTCACCGACGCCGAGATCTCAAGCCAGCTGCAGCGTTCGCTCTCCCGGAAGAAATGGGATGAGCTCCTGAACATGATCGACGTCAAGATCACTAGCCGACCTGAGCGAGAGCTTCTGCAGGCGGTCCGCGAGTTCCCGGGCACCCCGGACAAGCTCCGCCTCGACTCTGGCATCAAGCGTTACCTCGCTGCACTCCCGAACTGAGCCCAGAACGCCACGAAGAACGGCCACGAAGTCAGTGAGT # Right flank : CACGAGGCAGCGTGCTCGCACATGACTTCGACGTGCGCCTGCACGCCGACAACGGCCTTGGGACTGGTGGGCTCGCATGTTGCGGTGTCGCGTATTCGCGAGCCGCTCGACGCGCCGGACACGGTGAGTGATCGCTTGGGGATCGTGGCGGCCGCGGGCAACTACCAGAGCCAGCGGTCGAGGAACTCGGCCCAGATGAACCCGTGGTAGCCGTCGAAGGCAGGTGGATCGATCTTCTTGAGTTCGCCAGCGAGCATGCTGAGCTCGGCCAGGGCTTCGTCCTCGCGGTCATCCGGATCGCTGAGGATCTCGGACTCGCTGACGCGCAGGCCGTAGTGGTGCAGGGTCCGCAGCCACAGGCCGATGGAGGAGTTGGCGAACCATGCCTCGCCTTGGGGAAGGACGTAGTGGACCGTGCCTGTCCCGGGTTCGACGCCGAACGACCATTCCATGCCGGGCACGAGGTCGCCATGGTGATTCTGGGTGAGGCGGTAGAGCGA # Questionable array : NO Score: 3.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:-1.5, 6:0.25, 7:-0.20, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //