Array 1 36299-35867 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007040.1 Pasteurella multocida subsp. multocida str. HN07 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 36298 36 100.0 30 .................................... CGAGCGAGTAAAAACATCATTTTCTCGTAC 36232 36 100.0 30 .................................... TTTACATCAATATGTTCTTTAGCGTGGCAA 36166 36 100.0 30 .................................... AACCCCTGCATTGTAGGGTTAAGCTTTCCT 36100 36 100.0 30 .................................... TAAACCACTAACCGATAGCCAATTATTAGC 36034 36 100.0 30 .................................... AAAGGTGTAAGGCTTGTTGAGTATTCTAGA 35968 36 100.0 30 .................................... GAAGTGCGACAACACAAGCCCATGATGCAG 35902 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : CGCTATGTTTTTTTTTAAGCTTGTCGACAATTTTGTCTGAAATGATTAATTTCATATCCATTTCGGGTACCTATAAATTTTTCATAAATATTATTATTTGCTATAAACATAAATCCTCCGCATATTGTGTATATACAATTGTATATACAATAAAAAAAAAAGTCAACCCTTTCTTAGCAAAAAAATATTACTTACCTTTATTCAGGTGAACGGGTGACAAATTATTAAGCAATTTCTTTAAAAGATGAGGGGAATTTACACACCACTCACAAAACTGCGTTTTGCCTTTAAAGCCAGTAATATCAAGGGATTGTAAAAAAGCTGGTTAAAAGATGCGCGTTTTTTTTGTGGTTCAAATTTGAACCAAAAAATAGCACAAAAATACAGCTAAACAGGCGGTTGGATTTGGAGTAGACCCGTTAAAAATGAAAAAAGACTACGCTATTTTTCAATTTTAACGTGCCAAGATTATACCAGTTTTTAGAAAAGATATTATGTCA # Right flank : CTCGTGTCCCTTATCCCTTGTGGCACAAGGGATAAGGGCGTTTTTAATGCTCAAAAATTACTTGAATTCACGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACCCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAACGTATTGAACCTTCTTCAGGGAGGTGTTCACTGAGCCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 352638-354767 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007040.1 Pasteurella multocida subsp. multocida str. HN07 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 352638 28 100.0 32 ............................ TTTTTAGTTTGAATTTAAGGGCTTGTCCCTTT 352698 28 100.0 32 ............................ ATAGATGAGGCAGAAGCTAATGCAACGGTACC 352758 28 100.0 32 ............................ AGTCTCGGTTTATCACGTCTTTTTTTCTGCGT 352818 28 100.0 32 ............................ GCACTTGATCCGCCACATCCTGCGGAATGGTT 352878 28 100.0 32 ............................ TAAGCTTGTGGCAGTCGGTGTGCAAGTGCCAG 352938 28 100.0 32 ............................ GGCTGGATCATAACGCCCACCGTTACCCGTGT 352998 28 100.0 32 ............................ ATTTCCCATACGATTAGCATAAACTCGGTTAG 353058 28 100.0 32 ............................ ACACCGACAACCATCGCATCTGATGCTTATCA 353118 28 100.0 32 ............................ GCGGTATGTCGTCAGCCCAATTAAAAAACTGC 353178 28 100.0 33 ............................ AGAAATGCTAAAAAAAATGTTAGATTTTTACAA 353239 28 100.0 33 ............................ CTGAACGCGTTTATTTTTTCGTGAATAATAAAA 353300 28 100.0 32 ............................ GATTTGCGAACTTGACAACGCCAACCAGATTT 353360 28 100.0 32 ............................ ATTTCCCATACGATTAGCATAAACTCGGTTAG 353420 28 100.0 32 ............................ ACACCGACAACCATCGCATCTGATGCTTATCA 353480 28 100.0 32 ............................ GCGGTATGTCGTCAGCCCAATTAAAAAACTGC 353540 28 100.0 32 ............................ ATTATTTCGTGCGTATGGGCTCCAGCCACCAC 353600 28 100.0 32 ............................ ATAGCGGCTGAACTCTCAAAAGATTGACCGAG 353660 28 100.0 32 ............................ TAAACAAACAAGCTAGAGATAATCCCCAGTTA 353720 28 100.0 32 ............................ AGCTGGGCGGATTAGAGAATTTACGGTTTAAC 353780 28 100.0 32 ............................ GTTTGAGAAAAAGGTGCTTTGCTCGACTTGTT 353840 28 100.0 32 ............................ AACCGATCCAACTCACCATGGAGGAAGCGAAT 353900 28 100.0 32 ............................ AAAAACCGATCTTGTGTACAAGTATCAAAAGA 353960 28 100.0 32 ............................ CACTATTATTAATAAGTTGTTGATGTTCTGCG 354020 28 100.0 32 ............................ TTGGTGATTCGTACAGTTGAAATCAACGGCAC 354080 28 100.0 32 ............................ CGACGGAACACCGTTTGCAGCCCGCAAACCGC 354140 28 100.0 32 ............................ AATTTCAATCATCTCGAAAATATCTTTACAAG 354200 28 100.0 32 ............................ ATTGATTGAGAGTGGATATGTTTTCTCACCGA 354260 28 100.0 32 ............................ TTTCAGTCTCTGACCGCCAGCATAGACCCAAC 354320 28 100.0 32 ............................ AGAAGAACAAGAAAAGCAGTTGAAGAAAAAAG 354380 28 100.0 32 ............................ TAGTAAACGCAATGAGCCTGCCGCCACAAGTG 354440 28 100.0 32 ............................ TTGGATCGCCATACCGCCATTACCATTAATTT 354500 28 100.0 32 ............................ ATAAAGTTTCCCGCGCTAAAAAATCATATTAT 354560 28 100.0 32 ............................ GACCCCATTGGTCTAATTTCGCCCACGGGATT 354620 28 100.0 32 ............................ TTCCGCATATTCAACCGTATTATCTTCAGTTG 354680 28 100.0 32 ............................ GCAAGTGGCACTTGTGCGATTGAGCCGTATTT 354740 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCTAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1589509-1587424 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007040.1 Pasteurella multocida subsp. multocida str. HN07 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================================================================== ================== 1589508 28 100.0 32 ............................ AAGTGAAAAGATAAAAGATAATCACCGTAGCT 1589448 28 100.0 32 ............................ ACAAGTTTTATCTAAGAATTGGCGCATTTCTG 1589388 28 100.0 32 ............................ CTCTTGTTTTTTCAATCTGATCGTTTTGTCAG 1589328 28 100.0 32 ............................ AGCAGGCATAGAAAGATCTGGAATTAAATCTT 1589268 28 100.0 32 ............................ TCTTTTTACTCGTTGTACTGAAATTTTTTATT 1589208 28 100.0 32 ............................ AATCCCCCTAGCACGACGACATCACCACTTTT 1589148 28 100.0 32 ............................ AAATGGCTATCTTTTAACAATATTGAAATAAC 1589088 28 100.0 32 ............................ TTTTGGATCATCTTCTTTCACTTTAAAGCGGT 1589028 28 100.0 32 ............................ TGCTTTTCCTTTCATGATTGTGATCTTAATCA 1588968 28 100.0 32 ............................ ACTACATAAAATCACCGCCACAGTTGCTGTTG 1588908 28 100.0 32 ............................ ACGTGAACCAGACTTAACTCTAAGAGTTGGAC 1588848 28 100.0 32 ............................ TTTGCGCTGTCGGCGTCCTGTTTCTGTTTTGA 1588788 28 100.0 32 ............................ AAGTTGTTATATTAAACATGAAGAAATGAAAC 1588728 28 100.0 32 ............................ TGATGTGGGTGAATTGGTCGCAATAATACTCG 1588668 28 100.0 32 ............................ TTTTGCACAAACAATTAGGTCACCAATCTATC 1588608 28 100.0 32 ............................ TTTAACTATGCAGCAAGCGAAACCAAGGAAGA 1588548 28 100.0 32 ............................ GTTTGCAATGTGCCAGTTTTAATACCGACCGT 1588488 28 100.0 32 ............................ TCTTTTCTCAGGATTGTCTTTTAAATCCTGAT 1588428 28 100.0 32 ............................ ACCAGAAGAACTGTATAGCGAAATGCTTTATT 1588368 28 100.0 32 ............................ TGAATAACGTATTCAGACGGAATGCCACCTTC 1588308 28 100.0 32 ............................ TGTGATTTTTACTCTTTCATTGGTTATTTTCT 1588248 28 100.0 32 ............................ CACCTAATGGGTTTAATTGTCGCTGTGCGGTG 1588188 28 100.0 32 ............................ TTCAAAGCTTTCCACCAGCTCTTGGCGTTGAC 1588128 28 100.0 32 ............................ TTTTGTTGCGGCACCGCCACCGCAGAAAATGG 1588068 28 100.0 32 ............................ GTTTTTTACTGAGCAAAGCGTCATTTTATTAA 1588008 28 100.0 32 ............................ GTTTTGAGAACACCTTCAATCCACGGAATAAA 1587948 28 100.0 32 ............................ ATTGCCGCCATTGTCTCGAACTCTTGCCCTGT 1587888 28 100.0 32 ............................ ACTAATATTCACTTCTTTGGCTGTTGTGCTAA 1587828 28 100.0 32 ............................ TTTGCGAGCAAAAAACCAGATAATTCCCGCAA 1587768 28 100.0 32 ............................ TATCTTCCACATTCCACGTTATATCGATTACA 1587708 28 96.4 170 ............G............... TCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAAGACTGGAGTGAGAATGTCGTCGAAAACTTACA 1587510 28 96.4 32 ............G............... GCGTGCTAGTTTGTCTGCTGTTGCTTTCAAGA 1587450 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ========================================================================================================================================================================== ================== 33 28 99.3 36 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGGATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCCCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACAAAAAATATTGGTAAACGTCGCAAATCCAATACCCCCCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGTTCCATACTTGATGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATGACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGAATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.38, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //